Wall clock time and date at job start Tue Mar 31 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47200 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.47083 * 120.00385 * 3 2 1 6 6 H 1.48498 * 109.47457 * 0.02562 * 3 2 1 7 7 C 1.37881 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00404 * 185.99009 * 7 2 1 9 9 C 1.50701 * 119.99612 * 5.98659 * 7 2 1 10 10 C 1.52999 * 115.54978 * 275.20432 * 9 7 2 11 11 N 1.46504 * 109.46926 * 304.53658 * 10 9 7 12 12 C 1.34782 * 120.00162 * 174.90709 * 11 10 9 13 13 O 1.21589 * 119.99841 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99682 * 180.02562 * 14 12 11 16 16 H 1.08994 * 110.01935 * 33.60820 * 15 14 12 17 17 C 1.54265 * 110.02885 * 272.16321 * 15 14 12 18 18 C 1.54897 * 104.19532 * 217.10674 * 17 15 14 19 19 C 1.54890 * 102.74747 * 37.94466 * 18 17 15 20 20 C 1.53878 * 110.02807 * 154.99937 * 15 14 12 21 21 H 1.08997 * 110.03015 * 238.61453 * 20 15 14 22 22 C 1.52991 * 110.03506 * 359.97438 * 20 15 14 23 23 O 1.42904 * 109.47272 * 184.99737 * 22 20 15 24 24 C 1.52996 * 117.50045 * 129.53291 * 9 7 2 25 25 C 1.52996 * 117.50018 * 60.87115 * 9 7 2 26 26 H 0.97001 * 120.00086 * 185.35229 * 1 2 3 27 27 H 1.09004 * 109.47786 * 64.53607 * 10 9 7 28 28 H 1.09000 * 109.47271 * 184.53932 * 10 9 7 29 29 H 0.97000 * 119.99948 * 354.90979 * 11 10 9 30 30 H 0.97002 * 120.00258 * 359.97438 * 14 12 11 31 31 H 1.08990 * 110.48892 * 335.78305 * 17 15 14 32 32 H 1.09001 * 110.48601 * 98.43503 * 17 15 14 33 33 H 1.09005 * 110.75774 * 279.63448 * 18 17 15 34 34 H 1.08996 * 110.75870 * 156.25889 * 18 17 15 35 35 H 1.09002 * 110.48681 * 203.38117 * 19 18 17 36 36 H 1.09004 * 110.59915 * 80.79158 * 19 18 17 37 37 H 1.08996 * 109.47481 * 305.00093 * 22 20 15 38 38 H 1.09005 * 109.47504 * 65.00051 * 22 20 15 39 39 H 0.96702 * 113.99914 * 179.97438 * 23 22 20 40 40 H 1.08999 * 117.49637 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.49888 * 145.02085 * 24 9 7 42 42 H 1.09005 * 117.50223 * 214.97733 * 25 9 7 43 43 H 1.08998 * 117.50272 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0971 9 6 1.2573 -2.4955 -0.1372 10 6 0.6977 -3.0749 1.1636 11 7 1.7820 -3.2256 2.1372 12 6 1.5076 -3.6238 3.3953 13 8 0.3601 -3.8575 3.7223 14 7 2.5050 -3.7619 4.2910 15 6 2.2067 -4.1952 5.6584 16 1 1.3677 -4.8910 5.6546 17 6 1.8771 -2.9729 6.5400 18 6 2.5057 -3.3148 7.9137 19 6 3.8235 -4.0267 7.5189 20 6 3.4443 -4.8652 6.2807 21 1 3.2059 -5.8861 6.5790 22 6 4.5986 -4.8696 5.2766 23 8 5.7019 -5.5956 5.8222 24 6 1.7475 -3.4837 -1.1974 25 6 0.4435 -2.7121 -1.4146 26 1 -0.4850 -0.8364 0.0784 27 1 -0.0600 -2.4019 1.5649 28 1 0.2501 -4.0487 0.9647 29 1 2.6974 -3.0388 1.8764 30 1 3.4205 -3.5751 4.0303 31 1 2.3298 -2.0716 6.1271 32 1 0.7981 -2.8504 6.6342 33 1 1.8585 -3.9859 8.4785 34 1 2.7119 -2.4072 8.4808 35 1 4.1649 -4.6731 8.3274 36 1 4.5922 -3.2969 7.2646 37 1 4.2732 -5.3444 4.3510 38 1 4.9049 -3.8439 5.0705 39 1 6.4712 -5.6397 5.2379 40 1 2.6103 -3.1923 -1.7963 41 1 1.6711 -4.5466 -0.9683 42 1 -0.4904 -3.2677 -1.3284 43 1 0.4482 -1.9131 -2.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680715165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:25 Heat of formation + Delta-G solvation = -69.624070 kcal Electronic energy + Delta-G solvation = -22882.867346 eV Core-core repulsion = 19542.181010 eV Total energy + Delta-G solvation = -3340.686336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11844 -38.45609 -36.99094 -36.28797 -33.52377 -33.11419 -31.93780 -30.17553 -27.88673 -25.74454 -24.81907 -24.58284 -21.43440 -20.98876 -20.59695 -19.69462 -19.32318 -18.34234 -17.23022 -16.53277 -16.14759 -15.67701 -15.01703 -14.79115 -14.60487 -14.23498 -13.82973 -13.78846 -13.55709 -13.17570 -12.83750 -12.65040 -12.47385 -11.99658 -11.59499 -11.40860 -11.18593 -11.08398 -10.98065 -10.82387 -10.72000 -10.71099 -10.49644 -10.16798 -10.16355 -9.80414 -9.55707 -8.88502 -8.67278 -8.56771 -8.40964 -8.06405 -6.39520 -4.17066 3.13086 3.38043 3.39034 3.58204 3.73312 3.91119 4.43146 4.45268 4.49099 4.71490 4.83993 5.07189 5.13666 5.15535 5.25428 5.27981 5.40403 5.48093 5.52134 5.56129 5.68162 5.83205 5.85377 5.95434 6.12701 6.13130 6.19584 6.23865 6.27805 6.38256 6.52271 6.62815 6.79146 6.84337 7.15900 7.18846 7.26392 7.37217 7.47592 8.14866 8.31097 8.59332 8.79693 9.14993 9.58936 10.98253 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.004346 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.311472 B = 6441.362175 C = 6782.197874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.031 3.969 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.575 4.575 8 H 0.051 0.949 9 C 0.004 3.996 10 C 0.177 3.823 11 N -0.716 5.716 12 C 0.698 3.302 13 O -0.602 6.602 14 N -0.752 5.752 15 C 0.169 3.831 16 H 0.093 0.907 17 C -0.136 4.136 18 C -0.126 4.126 19 C -0.111 4.111 20 C -0.099 4.099 21 H 0.087 0.913 22 C 0.077 3.923 23 O -0.573 6.573 24 C -0.195 4.195 25 C -0.170 4.170 26 H 0.276 0.724 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.397 0.603 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.379 0.621 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -8.187 11.018 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.892 3.108 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.612 4.612 8 H 0.069 0.931 9 C 0.004 3.996 10 C 0.053 3.947 11 N -0.369 5.369 12 C 0.398 3.602 13 O -0.482 6.482 14 N -0.410 5.410 15 C 0.063 3.937 16 H 0.111 0.889 17 C -0.175 4.175 18 C -0.164 4.164 19 C -0.148 4.148 20 C -0.118 4.118 21 H 0.106 0.894 22 C -0.001 4.001 23 O -0.378 6.378 24 C -0.232 4.232 25 C -0.208 4.208 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.230 0.770 30 H 0.228 0.772 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.226 0.774 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.939 -6.813 11.702 15.696 hybrid contribution 1.404 -1.373 -0.795 2.118 sum 9.342 -8.186 10.907 16.530 Atomic orbital electron populations 1.70715 1.06867 1.31555 1.43972 1.25733 0.96503 1.02210 0.93179 0.83622 0.75004 0.75737 0.76402 1.21484 1.21570 1.20771 1.21127 0.93668 0.89686 1.56737 0.93054 1.19340 0.99123 0.95445 0.85741 1.20853 0.88036 0.97505 0.88293 1.44987 1.11859 1.70813 1.09196 1.16058 0.84713 0.78485 0.80932 1.90865 1.19415 1.58587 1.79302 1.45442 1.09443 1.74950 1.11150 1.21373 0.96554 0.95741 0.79997 0.88861 1.22842 1.01658 0.98326 0.94704 1.22500 0.96554 1.00332 0.96990 1.22345 0.97420 0.98405 0.96673 1.22024 0.93356 1.00814 0.95616 0.89438 1.22274 0.86802 0.94959 0.96018 1.86464 1.26379 1.77143 1.47808 1.22916 0.98135 0.95510 1.06640 1.22725 0.93066 1.02162 1.02878 0.91293 0.91958 0.94728 0.76964 0.77161 0.90959 0.90845 0.91324 0.91346 0.91364 0.91441 0.92908 0.93355 0.77430 0.90120 0.91432 0.91332 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.46 55.43 0.75 -25.13 16 2 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 3 Si 1.06 24.06 29.91 -169.99 -5.08 18.97 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.57 -14.74 8.26 -34.44 -0.28 -15.02 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.00 0.10 1.03 -155.66 -0.16 -0.06 16 10 C 0.18 4.00 5.49 -4.04 -0.02 3.97 16 11 N -0.72 -14.11 5.36 -65.22 -0.35 -14.46 16 12 C 0.70 13.45 8.56 -86.92 -0.74 12.71 16 13 O -0.60 -13.88 15.99 5.29 0.08 -13.80 16 14 N -0.75 -10.80 4.39 -57.58 -0.25 -11.05 16 15 C 0.17 2.18 3.23 -66.81 -0.22 1.97 16 16 H 0.09 1.36 7.56 -51.93 -0.39 0.97 16 17 C -0.14 -1.70 6.53 -25.07 -0.16 -1.87 16 18 C -0.13 -1.22 6.91 -24.73 -0.17 -1.39 16 19 C -0.11 -1.06 6.23 -25.07 -0.16 -1.21 16 20 C -0.10 -1.03 3.19 -89.50 -0.29 -1.32 16 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.08 0.74 4.96 37.15 0.18 0.92 16 23 O -0.57 -5.38 13.51 -35.23 -0.48 -5.85 16 24 C -0.19 -3.99 9.93 -26.70 -0.27 -4.25 16 25 C -0.17 -3.79 8.90 -26.70 -0.24 -4.02 16 26 H 0.28 7.96 6.13 -40.82 -0.25 7.71 16 27 H 0.06 1.60 7.51 -51.93 -0.39 1.21 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.40 7.17 8.17 -40.82 -0.33 6.83 16 30 H 0.39 4.69 5.91 -40.82 -0.24 4.45 16 31 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.65 7.76 -51.93 -0.40 0.24 16 37 H 0.05 0.52 7.42 -51.93 -0.39 0.13 16 38 H 0.05 0.42 7.11 -51.93 -0.37 0.06 16 39 H 0.38 1.96 9.12 45.56 0.42 2.38 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -31.73 346.48 -8.93 -40.65 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.20 Total: 14.28 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.62 Total: -8.85 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.14 Total: -50.63 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.39 Total: -19.65 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.73 -8.93 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680715165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.973 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds