Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48506 * 109.46971 * 269.99593 * 3 2 1 5 5 H 1.48498 * 109.47264 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.46964 * 149.99921 * 3 2 1 7 7 C 1.37882 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99431 * 175.14497 * 7 2 1 9 9 C 1.50701 * 120.00127 * 355.42071 * 7 2 1 10 10 C 1.52998 * 115.54653 * 274.90363 * 9 7 2 11 11 N 1.46503 * 109.47424 * 294.81983 * 10 9 7 12 12 C 1.34773 * 120.00136 * 184.80021 * 11 10 9 13 13 O 1.21583 * 120.00126 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99776 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99725 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.46950 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46972 * 185.16053 * 16 15 14 18 18 C 1.52994 * 115.55095 * 303.19890 * 17 16 15 19 19 O 1.42904 * 109.47070 * 297.75292 * 18 17 16 20 20 C 1.53000 * 117.49741 * 157.52675 * 17 16 15 21 21 C 1.53004 * 117.49389 * 88.86889 * 17 16 15 22 22 C 1.53001 * 117.49556 * 129.23430 * 9 7 2 23 23 C 1.52999 * 117.49983 * 60.57315 * 9 7 2 24 24 H 0.96999 * 119.99679 * 5.00484 * 1 2 3 25 25 H 1.08999 * 109.47568 * 54.82443 * 10 9 7 26 26 H 1.09000 * 109.46814 * 174.82128 * 10 9 7 27 27 H 0.97003 * 119.99582 * 4.79515 * 11 10 9 28 28 H 0.96997 * 120.00152 * 359.97438 * 14 12 11 29 29 H 1.08996 * 109.47631 * 299.99930 * 15 14 12 30 30 H 1.09000 * 109.47197 * 60.00189 * 15 14 12 31 31 H 1.08992 * 109.47264 * 305.16499 * 16 15 14 32 32 H 1.09003 * 109.46610 * 65.16168 * 16 15 14 33 33 H 1.09001 * 109.47293 * 57.75095 * 18 17 16 34 34 H 1.09000 * 109.47091 * 177.74945 * 18 17 16 35 35 H 0.96704 * 113.99778 * 179.97438 * 19 18 17 36 36 H 1.09001 * 117.49321 * 0.02562 * 20 17 16 37 37 H 1.08994 * 117.50042 * 145.02200 * 20 17 16 38 38 H 1.08995 * 117.49423 * 214.97949 * 21 17 16 39 39 H 1.09002 * 117.49892 * 359.97438 * 21 17 16 40 40 H 1.08991 * 117.50193 * 359.97438 * 22 9 7 41 41 H 1.09004 * 117.49506 * 145.02266 * 22 9 7 42 42 H 1.08995 * 117.50022 * 214.97872 * 23 9 7 43 43 H 1.09000 * 117.49547 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0786 9 6 1.2545 -2.4971 0.1053 10 6 0.9192 -2.9529 1.5268 11 7 2.1586 -3.2467 2.2506 12 6 2.1064 -3.7595 3.4959 13 8 1.0308 -3.9780 4.0188 14 7 3.2467 -4.0293 4.1619 15 6 3.1899 -4.5862 5.5157 16 6 4.6116 -4.7975 6.0403 17 6 4.5549 -5.4971 7.3998 18 6 3.7339 -4.7833 8.4755 19 8 4.3159 -3.5074 8.7506 20 6 5.7999 -6.2623 7.8530 21 6 4.5510 -7.0271 7.4073 22 6 1.5725 -3.5802 -0.9275 23 6 0.2447 -2.8216 -0.9973 24 1 -0.4849 0.8369 -0.0733 25 1 0.3756 -2.1619 2.0434 26 1 0.3018 -3.8502 1.4845 27 1 3.0168 -3.0721 1.8335 28 1 4.1048 -3.8547 3.7448 29 1 2.6594 -3.8954 6.1709 30 1 2.6654 -5.5415 5.4939 31 1 5.1704 -5.4148 5.3370 32 1 5.1060 -3.8321 6.1487 33 1 2.7117 -4.6477 8.1222 34 1 3.7272 -5.3834 9.3854 35 1 3.8458 -2.9978 9.4247 36 1 6.6594 -6.2669 7.1827 37 1 6.0338 -6.2575 8.9175 38 1 3.9638 -7.5251 8.1788 39 1 4.5884 -7.5352 6.4436 40 1 2.3237 -3.3502 -1.6829 41 1 1.5424 -4.6176 -0.5943 42 1 -0.6583 -3.3603 -0.7102 43 1 0.1225 -2.0925 -1.7983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682169262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = -41.566427 kcal Electronic energy + Delta-G solvation = -21990.071826 eV Core-core repulsion = 18650.602161 eV Total energy + Delta-G solvation = -3339.469665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55112 -38.85180 -36.74771 -36.04298 -34.52949 -33.19815 -31.93330 -30.11706 -26.99859 -26.14545 -25.09360 -23.27888 -22.50119 -21.14016 -20.33050 -19.39406 -19.14023 -17.61784 -17.47253 -16.33532 -15.96902 -15.80988 -15.25645 -14.84339 -14.63757 -14.08848 -13.89977 -13.83560 -13.64102 -13.17304 -13.01862 -12.61505 -12.14575 -11.94090 -11.78718 -11.57519 -11.49043 -11.18238 -10.97642 -10.91251 -10.61958 -10.51237 -10.29432 -10.20851 -9.91500 -9.68493 -9.41979 -9.01466 -8.78120 -8.45687 -8.20219 -7.93768 -6.04855 -4.14430 3.19929 3.27110 3.35320 3.36774 3.39153 3.84860 4.04294 4.36860 4.41756 4.50231 4.66493 4.86245 4.95469 5.11624 5.14494 5.23206 5.34609 5.37298 5.41563 5.48297 5.51575 5.62700 5.83593 5.86056 6.05530 6.08075 6.11808 6.38189 6.51520 6.62919 6.73732 6.84168 6.89338 7.15052 7.37172 7.39797 7.45277 7.49592 7.66349 7.83547 8.36996 8.70991 8.86755 9.25041 9.52435 11.02340 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.003341 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.635471 B = 8377.763934 C = 9042.545065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.606 6.606 14 N -0.755 5.755 15 C 0.146 3.854 16 C -0.089 4.089 17 C -0.121 4.121 18 C 0.110 3.890 19 O -0.568 6.568 20 C -0.166 4.166 21 C -0.167 4.167 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.396 0.604 28 H 0.393 0.607 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.379 0.621 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -10.817 13.993 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.374 5.374 12 C 0.397 3.603 13 O -0.486 6.486 14 N -0.412 5.412 15 C 0.021 3.979 16 C -0.127 4.127 17 C -0.122 4.122 18 C 0.032 3.968 19 O -0.373 6.373 20 C -0.203 4.203 21 C -0.204 4.204 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.230 0.770 28 H 0.226 0.774 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.226 0.774 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.001 -11.078 14.069 20.042 hybrid contribution 0.753 1.291 -0.003 1.495 sum 9.754 -9.786 14.066 19.717 Atomic orbital electron populations 1.69993 1.05868 1.26821 1.48368 1.24990 0.94824 0.98948 0.94350 0.86623 0.79936 0.83588 0.78027 1.20737 1.21194 1.19829 1.20343 0.92578 0.88620 1.52137 0.92278 1.19049 0.99329 0.93247 0.85982 1.20840 0.83311 0.97647 0.92339 1.45155 1.11225 1.66740 1.14261 1.16044 0.83921 0.78738 0.81576 1.90859 1.27962 1.60745 1.68994 1.45092 1.07637 1.71067 1.17358 1.21015 0.96137 0.98500 0.82257 1.21232 0.96797 1.01303 0.93336 1.21229 1.01794 0.92912 0.96217 1.21645 0.95438 0.84269 0.95449 1.86487 1.57084 1.30471 1.63253 1.23009 0.92048 1.03396 1.01816 1.23091 1.01347 0.92484 1.03504 1.23010 1.00686 0.95619 1.05515 1.22464 0.90796 1.01309 1.03447 0.92904 0.91784 0.94466 0.77016 0.77378 0.91975 0.92143 0.91266 0.90253 0.92569 0.93718 0.77380 0.88588 0.88733 0.88625 0.88104 0.90464 0.91748 0.91814 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.47 12.65 55.43 0.70 -23.76 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.95 8.59 -34.44 -0.30 -13.24 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.59 1.47 -155.66 -0.23 0.36 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 11 N -0.72 -14.50 5.48 -65.23 -0.36 -14.86 16 12 C 0.70 13.83 8.57 -86.92 -0.74 13.08 16 13 O -0.61 -14.37 16.34 5.29 0.09 -14.28 16 14 N -0.75 -11.24 5.56 -65.22 -0.36 -11.60 16 15 C 0.15 1.91 5.20 -4.04 -0.02 1.89 16 16 C -0.09 -0.90 5.16 -26.72 -0.14 -1.04 16 17 C -0.12 -1.10 1.89 -154.51 -0.29 -1.39 16 18 C 0.11 0.97 6.51 37.15 0.24 1.21 16 19 O -0.57 -5.48 13.55 -35.23 -0.48 -5.95 16 20 C -0.17 -1.30 9.97 -26.69 -0.27 -1.57 16 21 C -0.17 -1.28 9.93 -26.69 -0.27 -1.55 16 22 C -0.21 -4.46 9.96 -26.69 -0.27 -4.72 16 23 C -0.14 -3.30 9.14 -26.69 -0.24 -3.54 16 24 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 25 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.40 7.24 8.34 -40.82 -0.34 6.90 16 28 H 0.39 4.78 8.49 -40.82 -0.35 4.44 16 29 H 0.06 0.90 7.14 -51.93 -0.37 0.53 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.52 7.01 -51.93 -0.36 0.15 16 34 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 35 H 0.38 2.07 9.12 45.56 0.42 2.48 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -32.15 361.87 -9.08 -41.23 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -6.46 Total: 12.49 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.64 Total: -4.44 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.02 Total: -50.22 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.39 Total: -20.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.15 -9.08 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682169262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.333 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds