Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1 5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46970 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49869 * 243.62431 * 20 19 18 22 22 C 1.52997 * 117.49895 * 174.99961 * 20 19 18 23 23 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 24 24 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 26 26 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 27 27 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 28 28 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 29 29 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 30 30 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 31 31 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 32 32 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 33 33 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 34 34 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 35 35 H 1.08994 * 109.46835 * 300.00399 * 19 18 17 36 36 H 1.09000 * 109.46608 * 60.00105 * 19 18 17 37 37 H 1.09010 * 115.55159 * 29.33212 * 20 19 18 38 38 H 1.08995 * 117.49988 * 359.97438 * 21 20 19 39 39 H 1.09000 * 117.49753 * 145.02193 * 21 20 19 40 40 H 1.09000 * 117.49828 * 214.98037 * 22 20 19 41 41 H 1.08998 * 117.49924 * 0.02562 * 22 20 19 42 42 H 1.08999 * 113.61567 * 334.48111 * 23 10 9 43 43 H 1.08998 * 113.61196 * 105.38466 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 8 0.7100 -10.2459 4.4381 19 6 1.2994 -11.1216 5.4014 20 6 0.2259 -12.0529 5.9681 21 6 -0.0929 -11.9381 7.4601 22 6 0.6799 -13.1492 6.9339 23 6 1.2469 -4.8365 -0.5606 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 3.0560 -3.5693 -0.4293 27 1 2.9742 -4.3216 1.9018 28 1 1.1688 -4.1300 1.9705 29 1 2.8060 -6.1607 0.2828 30 1 0.0882 -6.1151 1.7060 31 1 0.4334 -7.2968 0.4205 32 1 2.5317 -7.3971 2.3080 33 1 2.4196 -9.8859 3.3348 34 1 2.0731 -8.7043 4.6201 35 1 2.0793 -11.7148 4.9240 36 1 1.7339 -10.5331 6.2095 37 1 -0.5981 -12.2860 5.2935 38 1 0.4625 -11.1994 8.0380 39 1 -1.1268 -12.0955 7.7674 40 1 0.1545 -14.1034 6.8950 41 1 1.7434 -13.2067 7.1659 42 1 0.1684 -4.7076 -0.4690 43 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692334303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = -30.209160 kcal Electronic energy + Delta-G solvation = -21002.317731 eV Core-core repulsion = 17663.340553 eV Total energy + Delta-G solvation = -3338.977177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94689 -38.76507 -38.22729 -36.67829 -34.67290 -33.29341 -30.48192 -29.45042 -27.43914 -25.89640 -25.09570 -23.77780 -22.79206 -21.26513 -21.06622 -20.61419 -19.06204 -17.52246 -17.16138 -16.98634 -16.64500 -16.00811 -15.55237 -15.07764 -14.85239 -14.65839 -14.44743 -13.90165 -13.55654 -13.48165 -12.98051 -12.70056 -12.61717 -11.95523 -11.90882 -11.81515 -11.50328 -11.38165 -11.23918 -10.87467 -10.82922 -10.68871 -10.54246 -10.25444 -10.16911 -9.92173 -9.82810 -9.80447 -9.48548 -9.05170 -8.86790 -6.96761 -5.78384 -3.07469 2.53639 2.60466 3.33685 3.42725 3.47102 3.48458 3.69951 4.38746 4.46293 4.56455 4.57929 4.69238 4.78135 4.84943 4.89422 4.96311 5.00309 5.05761 5.20111 5.22231 5.22803 5.46147 5.47912 5.49208 5.68610 5.78934 5.81511 5.84225 5.92532 6.08747 6.23904 6.30070 6.35320 6.42979 6.58120 6.72729 6.81775 7.10844 7.42714 7.67992 8.15814 8.40132 9.50993 10.09446 10.43554 11.43868 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.002141 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.467681 B =13076.979392 C =13348.318518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 C -0.161 4.161 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.724 5.724 15 C 0.510 3.490 16 O -0.521 6.521 17 C 0.045 3.955 18 O -0.360 6.360 19 C 0.092 3.908 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.174 4.174 23 C -0.142 4.142 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -24.612 10.535 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.202 4.202 12 C -0.146 4.146 13 C 0.011 3.989 14 N -0.377 5.377 15 C 0.294 3.706 16 O -0.396 6.396 17 C -0.035 4.035 18 O -0.278 6.278 19 C 0.015 3.985 20 C -0.172 4.172 21 C -0.214 4.214 22 C -0.211 4.211 23 C -0.181 4.181 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.447 -24.529 10.334 27.168 hybrid contribution 0.936 0.976 0.227 1.371 sum 6.383 -23.552 10.560 26.589 Atomic orbital electron populations 1.69651 1.05132 1.25880 1.57321 1.24778 0.95529 0.97799 1.02819 0.86260 0.78523 0.83512 0.77824 1.21246 1.21679 1.21262 1.19253 0.91029 0.84264 1.43107 0.91158 1.42407 1.05767 0.99866 1.87064 1.21522 0.95232 0.85083 0.92845 1.24001 1.01292 0.94778 1.00127 1.22691 0.98429 0.94439 0.99073 1.21456 0.95036 0.91730 0.90724 1.45930 1.12859 1.36216 1.42739 1.20198 0.87852 0.80877 0.81661 1.90745 1.14993 1.68679 1.65197 1.22201 0.92423 0.92696 0.96210 1.88019 1.33961 1.48843 1.56985 1.22072 0.94441 0.90984 0.91004 1.22119 1.01713 1.00257 0.93130 1.23084 1.01610 1.00670 0.96011 1.22982 1.00906 0.93874 1.03323 1.23426 1.00956 0.97024 0.96727 0.93383 0.78049 0.90761 0.92776 0.90314 0.89347 0.91108 0.91668 0.76596 0.90315 0.90222 0.92673 0.92923 0.86592 0.88603 0.88477 0.88330 0.88658 0.90056 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.73 5.41 -52.64 -0.28 -18.02 16 10 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16 11 C -0.16 -2.60 7.45 -25.77 -0.19 -2.80 16 12 C -0.13 -1.65 3.76 -89.67 -0.34 -1.98 16 13 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 14 N -0.72 -7.90 5.56 -60.29 -0.33 -8.23 16 15 C 0.51 6.57 7.91 -10.99 -0.09 6.48 16 16 O -0.52 -9.37 16.50 -14.36 -0.24 -9.61 16 17 C 0.04 0.41 6.42 36.00 0.23 0.64 16 18 O -0.36 -4.20 9.88 -55.14 -0.54 -4.74 16 19 C 0.09 0.73 6.22 37.15 0.23 0.96 16 20 C -0.15 -1.23 6.06 -90.62 -0.55 -1.77 16 21 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 22 C -0.17 -1.01 10.25 -26.73 -0.27 -1.29 16 23 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 26 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.40 3.10 8.47 -40.82 -0.35 2.76 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 37 H 0.12 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.10 0.59 8.03 -51.93 -0.42 0.18 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -34.04 362.27 -9.60 -43.64 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.35 Total: 8.17 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.01 Total: -6.46 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.10 Total: -53.71 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.78 Total: -14.35 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.04 -9.60 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692334303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.432 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds