Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47391 * 270.00734 * 3 2 1 5 5 H 1.48508 * 109.46978 * 30.00377 * 3 2 1 6 6 H 1.48495 * 109.47204 * 150.00047 * 3 2 1 7 7 C 1.38812 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99975 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99662 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99806 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47146 * 34.99951 * 10 9 7 12 12 C 1.52993 * 109.47091 * 154.99934 * 10 9 7 13 13 N 1.46497 * 109.47533 * 305.00382 * 12 10 9 14 14 C 1.34777 * 120.00272 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99927 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00007 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.52413 * 299.87632 * 16 14 13 18 18 C 1.53180 * 109.52075 * 179.68544 * 16 14 13 19 19 C 1.53180 * 109.03380 * 183.11524 * 18 16 14 20 20 C 1.53096 * 109.16300 * 56.98167 * 19 18 16 21 21 O 1.42905 * 109.41404 * 302.38785 * 20 19 18 22 22 C 1.42905 * 114.09321 * 61.16204 * 21 20 19 23 23 C 1.53000 * 109.47194 * 275.00359 * 10 9 7 24 24 C 1.52998 * 117.50026 * 128.74601 * 23 10 9 25 25 C 1.53001 * 117.49998 * 60.08703 * 23 10 9 26 26 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47325 * 184.99546 * 12 10 9 29 29 H 1.09003 * 109.47039 * 64.99898 * 12 10 9 30 30 H 0.97001 * 119.99858 * 359.97438 * 13 12 10 31 31 H 1.08996 * 109.54290 * 302.97962 * 18 16 14 32 32 H 1.08991 * 109.54625 * 63.16062 * 18 16 14 33 33 H 1.09001 * 109.52400 * 297.07495 * 19 18 16 34 34 H 1.09004 * 109.52264 * 176.88591 * 19 18 16 35 35 H 1.09005 * 109.47867 * 182.40583 * 20 19 18 36 36 H 1.09001 * 109.48124 * 62.37304 * 20 19 18 37 37 H 1.09000 * 109.48199 * 58.82419 * 22 21 20 38 38 H 1.09008 * 109.47379 * 178.86008 * 22 21 20 39 39 H 1.09000 * 115.54500 * 274.41739 * 23 10 9 40 40 H 1.09002 * 117.50045 * 0.02562 * 24 23 10 41 41 H 1.09003 * 117.49864 * 145.01814 * 24 23 10 42 42 H 1.09003 * 117.49805 * 214.98168 * 25 23 10 43 43 H 1.08998 * 117.50126 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5645 -3.2066 -0.5902 12 6 5.4991 -2.2591 -0.6113 13 7 5.3611 -1.6642 -1.9429 14 6 6.4588 -1.3862 -2.6739 15 8 7.5609 -1.6282 -2.2290 16 6 6.3168 -0.7748 -4.0439 17 1 5.7399 -1.4432 -4.6831 18 6 7.7052 -0.5543 -4.6524 19 6 7.5513 0.1382 -6.0101 20 6 6.7847 1.4498 -5.8212 21 8 5.5158 1.1765 -5.2233 22 6 5.5979 0.5721 -3.9310 23 6 4.2588 -2.9752 1.4360 24 6 3.8349 -4.4164 1.7256 25 6 2.9756 -3.2511 2.2222 26 1 -0.4849 0.8400 0.0004 27 1 3.8647 -0.3621 -0.0007 28 1 6.0105 -3.2181 -0.6929 29 1 6.0785 -1.5915 0.0265 30 1 4.4797 -1.4703 -2.2985 31 1 8.2989 0.0736 -3.9881 32 1 8.2016 -1.5153 -4.7860 33 1 6.9999 -0.5114 -6.6899 34 1 8.5369 0.3489 -6.4253 35 1 6.6349 1.9261 -6.7902 36 1 7.3560 2.1148 -5.1736 37 1 6.1537 1.2256 -3.2587 38 1 4.5931 0.4160 -3.5383 39 1 5.1122 -2.5809 1.9877 40 1 3.4520 -5.0056 0.8923 41 1 4.4093 -4.9704 2.4682 42 1 2.9849 -3.0388 3.2913 43 1 2.0269 -3.0731 1.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752448479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -57.025043 kcal Electronic energy + Delta-G solvation = -22997.012425 eV Core-core repulsion = 19656.872424 eV Total energy + Delta-G solvation = -3340.140001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28157 -38.64372 -37.61367 -34.83933 -33.67386 -33.51304 -31.79418 -30.99320 -28.44084 -25.22096 -24.65764 -23.35666 -22.25816 -21.73006 -20.83144 -20.12493 -19.53991 -17.88881 -17.02882 -16.41228 -16.15562 -15.57463 -15.38813 -15.11189 -14.70741 -14.40496 -14.15857 -13.76200 -13.67626 -13.48903 -12.94638 -12.80766 -12.61890 -12.42557 -11.75245 -11.53644 -11.40234 -11.28960 -11.09804 -10.95365 -10.91282 -10.75945 -10.53889 -10.29949 -9.88543 -9.75288 -9.62615 -9.48113 -9.39437 -9.04356 -8.82118 -7.39488 -5.85091 -3.21721 2.73015 3.30177 3.33804 3.35032 3.41453 3.76062 4.37508 4.49829 4.51474 4.67321 4.70802 4.76874 4.98287 5.07370 5.14219 5.24082 5.29779 5.39657 5.46954 5.53805 5.56188 5.61637 5.63772 5.68909 5.72278 5.79538 5.89155 5.95089 5.96404 6.10803 6.12273 6.16592 6.44489 6.53605 6.70092 6.73235 6.96850 7.01322 7.73414 7.88830 8.32697 8.37478 9.10031 9.82601 10.01712 11.32552 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.005623 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.399913 B = 4978.544534 C = 6504.575767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.877 3.123 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.064 0.936 12 C 0.115 3.885 13 N -0.716 5.716 14 C 0.516 3.484 15 O -0.549 6.549 16 C -0.144 4.144 17 H 0.106 0.894 18 C -0.101 4.101 19 C -0.156 4.156 20 C 0.055 3.945 21 O -0.374 6.374 22 C 0.069 3.931 23 C -0.164 4.164 24 C -0.193 4.193 25 C -0.154 4.154 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -2.117 -8.121 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.088 3.912 11 H 0.082 0.918 12 C -0.009 4.009 13 N -0.368 5.368 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.165 4.165 17 H 0.124 0.876 18 C -0.138 4.138 19 C -0.193 4.193 20 C -0.022 4.022 21 O -0.293 6.293 22 C -0.008 4.008 23 C -0.186 4.186 24 C -0.231 4.231 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.763 -2.296 -7.898 16.033 hybrid contribution 0.371 1.245 0.250 1.322 sum 14.134 -1.052 -7.648 16.105 Atomic orbital electron populations 1.69687 1.05078 1.25901 1.57018 1.24638 0.95126 0.97026 1.01831 0.86671 0.79314 0.85330 0.77934 1.20849 1.21806 1.20404 1.18997 0.80277 0.94544 1.43436 0.88998 1.42839 1.04110 1.01653 1.89838 1.20025 0.89761 0.89708 0.91668 0.91774 1.21658 0.98362 0.98136 0.82767 1.46089 1.09595 1.63046 1.18052 1.20370 0.84505 0.78379 0.86565 1.90668 1.25922 1.53803 1.72312 1.22011 0.99958 0.99330 0.95222 0.87575 1.21385 0.94802 1.01936 0.95724 1.22229 1.01218 0.97976 0.97919 1.22642 0.85174 0.95851 0.98493 1.87998 1.28466 1.80561 1.32238 1.22579 1.01836 0.91190 0.85234 1.22948 0.99091 0.97105 0.99440 1.22953 1.05440 0.91302 1.03416 1.22849 0.96792 1.00373 0.99102 0.92982 0.80532 0.91218 0.91839 0.75315 0.91018 0.90751 0.90885 0.90584 0.88780 0.93109 0.92538 0.87693 0.89188 0.89399 0.90051 0.90208 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.97 55.49 0.78 -26.88 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.01 27.73 -169.99 -4.71 16.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.14 9.11 -15.06 -0.14 -6.28 16 8 H 0.09 2.51 7.14 -52.49 -0.37 2.13 16 9 N -0.74 -15.54 4.34 -53.43 -0.23 -15.77 16 10 C 0.20 3.43 2.70 -67.93 -0.18 3.25 16 11 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 12 C 0.12 1.79 5.22 -4.05 -0.02 1.77 16 13 N -0.72 -10.72 5.29 -60.30 -0.32 -11.04 16 14 C 0.52 7.74 7.16 -10.99 -0.08 7.66 16 15 O -0.55 -9.80 15.97 5.56 0.09 -9.72 16 16 C -0.14 -1.77 2.73 -91.63 -0.25 -2.02 16 17 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.12 4.62 -26.54 -0.12 -1.24 16 19 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 20 C 0.06 0.55 6.84 37.21 0.25 0.80 16 21 O -0.37 -4.94 10.77 -35.23 -0.38 -5.31 16 22 C 0.07 0.90 6.00 37.21 0.22 1.12 16 23 C -0.16 -2.71 5.36 -90.62 -0.49 -3.20 16 24 C -0.19 -2.85 10.18 -26.70 -0.27 -3.12 16 25 C -0.15 -2.69 9.78 -26.69 -0.26 -2.95 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.36 7.72 5.66 -40.82 -0.23 7.49 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.41 6.12 7.61 -40.82 -0.31 5.80 16 31 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.42 7.64 -51.92 -0.40 1.03 16 39 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 40 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.11 2.27 6.23 -51.93 -0.32 1.94 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -30.09 344.32 -8.30 -38.39 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -7.12 Total: 14.45 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.59 Total: -5.60 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.22 Total: -53.69 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.29 Total: -15.03 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.09 -8.30 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752448479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.634 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds