Wall clock time and date at job start Tue Mar 31 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 13 13 N 1.46498 * 109.46790 * 54.99729 * 12 10 9 14 14 C 1.34781 * 119.99881 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99946 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.52423 * 60.12543 * 16 14 13 18 18 C 1.53180 * 109.52332 * 180.31616 * 16 14 13 19 19 C 1.53182 * 109.03812 * 176.88802 * 18 16 14 20 20 C 1.53098 * 109.16158 * 303.02011 * 19 18 16 21 21 O 1.42901 * 109.41493 * 57.60819 * 20 19 18 22 22 C 1.42908 * 114.09953 * 298.84247 * 21 20 19 23 23 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 24 24 C 1.53000 * 117.49550 * 8.74571 * 23 10 9 25 25 C 1.52998 * 117.49641 * 300.08805 * 23 10 9 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.47277 * 174.99833 * 12 10 9 29 29 H 1.08998 * 109.47005 * 295.00527 * 12 10 9 30 30 H 0.97000 * 120.00512 * 359.97438 * 13 12 10 31 31 H 1.09002 * 109.54223 * 296.75237 * 18 16 14 32 32 H 1.08998 * 109.54493 * 57.01983 * 18 16 14 33 33 H 1.08990 * 109.51943 * 183.11218 * 19 18 16 34 34 H 1.09000 * 109.57488 * 62.95278 * 19 18 16 35 35 H 1.09000 * 109.47583 * 297.62373 * 20 19 18 36 36 H 1.08991 * 109.48632 * 177.59988 * 20 19 18 37 37 H 1.09005 * 109.47638 * 301.17599 * 22 21 20 38 38 H 1.09000 * 109.49124 * 181.15106 * 22 21 20 39 39 H 1.09002 * 115.55172 * 154.41804 * 23 10 9 40 40 H 1.08995 * 117.50228 * 0.02562 * 24 23 10 41 41 H 1.09005 * 117.50008 * 145.02707 * 24 23 10 42 42 H 1.09004 * 117.50291 * 214.97565 * 25 23 10 43 43 H 1.09002 * 117.50449 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 1.1812 -4.7519 -0.6123 13 7 0.7356 -4.3346 -1.9440 14 6 -0.0538 -5.1461 -2.6754 15 8 -0.3955 -6.2215 -2.2310 16 6 -0.5127 -4.7166 -4.0451 17 1 0.3544 -4.5504 -4.6843 18 6 -1.3975 -5.8086 -4.6543 19 6 -1.9207 -5.3285 -6.0116 20 6 -2.6738 -4.0091 -5.8217 21 8 -1.8030 -3.0470 -5.2232 22 6 -1.3201 -3.4210 -3.9312 23 6 2.4209 -4.0363 1.4355 24 6 1.8115 -3.1997 2.5623 25 6 3.2978 -3.0613 2.2236 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 1.7562 -5.6743 -0.6940 29 1 0.3132 -4.9200 0.0251 30 1 1.0079 -3.4740 -2.2991 31 1 -0.8126 -6.7183 -4.7901 32 1 -2.2380 -6.0097 -3.9900 33 1 -2.5956 -6.0766 -6.4271 34 1 -1.0833 -5.1751 -6.6922 35 1 -3.5352 -4.1723 -5.1741 36 1 -3.0117 -3.6408 -6.7902 37 1 -2.1639 -3.5764 -3.2589 38 1 -0.6830 -2.6289 -3.5378 39 1 2.5620 -5.1014 1.6191 40 1 1.1518 -2.3794 2.2799 41 1 1.5521 -3.7144 3.4875 42 1 4.0156 -3.4848 2.9261 43 1 3.6166 -2.1496 1.7182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752448480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:26 Heat of formation + Delta-G solvation = -57.089091 kcal Electronic energy + Delta-G solvation = -23071.150989 eV Core-core repulsion = 19731.008211 eV Total energy + Delta-G solvation = -3340.142778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21520 -38.59370 -37.66402 -34.64213 -33.62817 -33.57980 -31.73138 -30.53274 -27.92530 -25.13084 -24.54250 -23.45899 -22.66352 -21.58443 -20.77241 -19.93534 -19.13696 -17.55828 -17.16618 -16.33825 -16.09111 -15.62395 -15.30463 -14.98941 -14.67966 -14.41319 -13.94634 -13.80688 -13.64284 -13.48077 -13.17449 -12.88845 -12.55794 -12.04930 -11.63929 -11.41024 -11.31162 -11.23511 -11.01158 -10.79885 -10.64822 -10.47415 -10.43267 -10.03170 -9.82010 -9.62455 -9.44515 -9.27211 -9.21326 -9.01445 -8.74813 -7.16732 -6.16649 -3.19951 2.79462 3.39774 3.48025 3.50026 3.67602 3.83679 4.48128 4.56017 4.62788 4.72864 4.77079 4.83276 5.05289 5.19840 5.25422 5.30603 5.41277 5.48933 5.54233 5.63813 5.66220 5.68248 5.73673 5.74939 5.85214 5.86809 5.95548 5.98094 6.02652 6.17300 6.31226 6.31725 6.54945 6.63433 6.79167 6.93545 7.09147 7.14611 7.74035 7.80381 8.43993 8.66858 9.10437 9.97092 10.11776 11.29916 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.005149 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.787030 B = 5437.028211 C = 6915.696209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.038 4.038 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.197 3.803 11 H 0.058 0.942 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.516 3.484 15 O -0.551 6.551 16 C -0.143 4.143 17 H 0.104 0.896 18 C -0.100 4.100 19 C -0.156 4.156 20 C 0.055 3.945 21 O -0.375 6.375 22 C 0.072 3.928 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.172 4.172 26 H 0.255 0.745 27 H 0.369 0.631 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.410 0.590 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -9.589 -7.956 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.237 4.237 3 Si 0.906 3.094 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.084 0.916 9 N -0.371 5.371 10 C 0.087 3.913 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.364 5.364 14 C 0.302 3.698 15 O -0.429 6.429 16 C -0.164 4.164 17 H 0.122 0.878 18 C -0.138 4.138 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.293 6.293 22 C -0.006 4.006 23 C -0.200 4.200 24 C -0.199 4.199 25 C -0.209 4.209 26 H 0.067 0.933 27 H 0.202 0.798 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.246 0.754 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.842 -8.473 -7.731 11.501 hybrid contribution 0.137 -1.631 0.192 1.648 sum -0.706 -10.103 -7.539 12.626 Atomic orbital electron populations 1.70910 1.06024 1.28456 1.52992 1.25664 0.96953 1.00794 1.00263 0.83309 0.74323 0.75962 0.75853 1.21125 1.22310 1.22294 1.19948 0.91889 0.85417 1.48929 0.91634 1.42464 1.04799 1.00470 1.89349 1.19925 0.94035 0.85553 0.91810 0.92395 1.21605 0.98759 0.97542 0.82824 1.46063 1.50630 1.21814 1.17934 1.20369 0.78348 0.84497 0.86591 1.90661 1.57080 1.22802 1.72398 1.22002 1.01012 0.98295 0.95141 0.87828 1.21385 0.99501 0.97217 0.95735 1.22228 1.01226 0.97995 0.97885 1.22628 0.92095 0.88942 0.98475 1.87994 1.65260 1.43675 1.32355 1.22557 0.97687 0.95217 0.85094 1.23059 1.06162 0.95371 0.95438 1.22857 0.96865 1.03317 0.96901 1.22854 0.93340 1.01878 1.02863 0.93345 0.79762 0.91771 0.91800 0.75366 0.90876 0.90987 0.90635 0.90977 0.93085 0.88841 0.92477 0.87580 0.89598 0.86844 0.91217 0.90951 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -26.92 13.70 55.49 0.76 -26.15 16 2 C -0.04 -1.02 5.50 -17.43 -0.10 -1.11 16 3 Si 1.07 24.54 29.92 -169.99 -5.09 19.45 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.30 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.33 -8.19 8.15 -15.06 -0.12 -8.31 16 8 H 0.07 1.63 6.91 -52.49 -0.36 1.27 16 9 N -0.73 -15.73 3.07 -53.43 -0.16 -15.90 16 10 C 0.20 3.58 2.86 -67.94 -0.19 3.39 16 11 H 0.06 1.09 8.08 -51.92 -0.42 0.67 16 12 C 0.12 1.94 5.22 -4.04 -0.02 1.92 16 13 N -0.71 -11.32 5.29 -60.30 -0.32 -11.64 16 14 C 0.52 8.19 7.16 -10.98 -0.08 8.11 16 15 O -0.55 -10.35 15.97 5.56 0.09 -10.26 16 16 C -0.14 -1.87 2.73 -91.63 -0.25 -2.12 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.10 -1.19 4.62 -26.54 -0.12 -1.31 16 19 C -0.16 -1.50 6.14 -26.59 -0.16 -1.66 16 20 C 0.06 0.58 6.84 37.21 0.25 0.84 16 21 O -0.37 -5.19 10.77 -35.23 -0.38 -5.57 16 22 C 0.07 0.99 6.00 37.21 0.22 1.21 16 23 C -0.18 -3.10 5.71 -90.62 -0.52 -3.61 16 24 C -0.16 -3.03 9.74 -26.69 -0.26 -3.29 16 25 C -0.17 -3.08 9.87 -26.69 -0.26 -3.34 16 26 H 0.26 7.21 6.77 -40.82 -0.28 6.93 16 27 H 0.37 8.53 6.63 -40.82 -0.27 8.26 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.41 6.58 7.60 -40.82 -0.31 6.27 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.56 7.64 -51.93 -0.40 1.16 16 39 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.11 2.52 6.68 -51.93 -0.35 2.18 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.10 2.09 6.22 -51.93 -0.32 1.77 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -29.01 342.82 -8.54 -37.54 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -6.99 Total: 16.64 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.61 Total: -9.28 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.28 Total: -53.70 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.29 Total: -15.82 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.09 Total: 19.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.01 -8.54 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752448480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.548 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds