Wall clock time and date at job start Tue Mar 31 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99725 * 2 1 4 4 H 1.48505 * 109.47002 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.47249 * 29.99861 * 3 2 1 6 6 H 1.48498 * 109.47095 * 150.00139 * 3 2 1 7 7 C 1.38818 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47113 * 34.99692 * 10 9 7 12 12 C 1.52999 * 109.47314 * 154.99847 * 10 9 7 13 13 N 1.46500 * 109.47362 * 304.99612 * 12 10 9 14 14 C 1.34773 * 120.00323 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99510 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00136 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.52457 * 60.12655 * 16 14 13 18 18 C 1.53178 * 109.52065 * 180.31615 * 16 14 13 19 19 C 1.53178 * 109.03511 * 176.88586 * 18 16 14 20 20 C 1.53096 * 109.16278 * 303.01594 * 19 18 16 21 21 O 1.42930 * 109.41898 * 57.61137 * 20 19 18 22 22 C 1.42904 * 114.08305 * 298.84863 * 21 20 19 23 23 C 1.53002 * 109.47002 * 274.99840 * 10 9 7 24 24 C 1.53004 * 117.49850 * 128.74445 * 23 10 9 25 25 C 1.53003 * 117.49564 * 60.08442 * 23 10 9 26 26 H 0.97000 * 120.00307 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00515 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.47223 * 184.99364 * 12 10 9 29 29 H 1.09003 * 109.46855 * 65.00170 * 12 10 9 30 30 H 0.97004 * 119.99714 * 0.02562 * 13 12 10 31 31 H 1.09002 * 109.54461 * 296.74932 * 18 16 14 32 32 H 1.08992 * 109.54753 * 56.92737 * 18 16 14 33 33 H 1.08999 * 109.52488 * 62.92180 * 19 18 16 34 34 H 1.09004 * 109.52654 * 183.11392 * 19 18 16 35 35 H 1.09003 * 109.48254 * 177.58780 * 20 19 18 36 36 H 1.08992 * 109.48305 * 297.61902 * 20 19 18 37 37 H 1.09002 * 109.48241 * 301.16394 * 22 21 20 38 38 H 1.08999 * 109.47648 * 181.13988 * 22 21 20 39 39 H 1.09003 * 115.55102 * 274.41950 * 23 10 9 40 40 H 1.08995 * 117.49862 * 0.02562 * 24 23 10 41 41 H 1.09006 * 117.49582 * 145.02431 * 24 23 10 42 42 H 1.09005 * 117.49830 * 214.97841 * 25 23 10 43 43 H 1.08994 * 117.49945 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 1.1811 -4.7521 0.6091 13 7 0.7346 -4.3356 1.9408 14 6 -0.0551 -5.1474 2.6713 15 8 -0.3957 -6.2231 2.2263 16 6 -0.5149 -4.7186 4.0408 17 1 -1.0918 -3.7973 3.9596 18 6 -1.3872 -5.8177 4.6553 19 6 -1.7839 -5.4049 6.0761 20 6 -0.5174 -5.1423 6.8952 21 8 0.2633 -4.1322 6.2525 22 6 0.7025 -4.4826 4.9385 23 6 2.4221 -4.0355 -1.4376 24 6 3.8824 -4.3890 -1.7268 25 6 3.3029 -3.0619 -2.2233 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3882 0.0002 28 1 1.7561 -5.6746 0.6907 29 1 0.3136 -4.9201 -0.0291 30 1 1.0067 -3.4751 2.2964 31 1 -2.2842 -5.9520 4.0508 32 1 -0.8268 -6.7520 4.6887 33 1 -2.3869 -4.4977 6.0369 34 1 -2.3588 -6.2058 6.5410 35 1 -0.7940 -4.8067 7.8947 36 1 0.0652 -6.0606 6.9682 37 1 1.3012 -5.3922 4.9858 38 1 1.3048 -3.6719 4.5285 39 1 1.6542 -4.5773 -1.9897 40 1 4.5837 -4.3521 -0.8933 41 1 4.0751 -5.1631 -2.4696 42 1 3.1147 -2.9636 -3.2925 43 1 3.6227 -2.1515 -1.7166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752448481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:29 Heat of formation + Delta-G solvation = -61.177183 kcal Electronic energy + Delta-G solvation = -22794.086753 eV Core-core repulsion = 19453.766702 eV Total energy + Delta-G solvation = -3340.320051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17621 -38.55127 -37.50224 -34.71360 -33.60318 -33.42706 -31.71288 -30.68201 -28.01902 -25.15425 -24.58948 -23.53082 -22.34271 -21.71921 -20.73950 -19.98353 -19.38208 -17.56081 -16.90663 -16.35762 -16.06556 -15.50318 -15.23227 -15.00221 -14.57856 -14.48232 -14.00862 -13.77974 -13.59868 -13.17031 -13.06510 -12.86930 -12.58126 -12.09157 -11.60403 -11.40605 -11.21889 -11.19330 -11.01429 -10.89497 -10.87657 -10.73566 -10.48994 -10.14595 -9.96142 -9.80432 -9.60448 -9.41222 -9.29879 -9.00486 -8.65921 -7.07919 -5.84321 -3.14078 2.87613 3.38177 3.43754 3.45825 3.46396 3.79842 4.38935 4.57230 4.58309 4.75498 4.78818 4.83440 5.04579 5.20158 5.22468 5.29038 5.44793 5.49200 5.50394 5.58302 5.59583 5.68267 5.72203 5.76782 5.85165 5.88083 5.99168 6.04625 6.06200 6.15232 6.21061 6.37798 6.52390 6.57677 6.74684 6.87552 6.95434 7.03247 7.62493 7.89430 8.32401 8.52462 9.44798 9.98565 10.34666 11.37478 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.004805 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.660319 B = 5825.264000 C = 7109.323860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.711 5.711 14 C 0.517 3.483 15 O -0.553 6.553 16 C -0.145 4.145 17 H 0.108 0.892 18 C -0.100 4.100 19 C -0.157 4.157 20 C 0.057 3.943 21 O -0.376 6.376 22 C 0.073 3.927 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -10.790 8.970 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.362 5.362 14 C 0.303 3.697 15 O -0.431 6.431 16 C -0.166 4.166 17 H 0.126 0.874 18 C -0.138 4.138 19 C -0.194 4.194 20 C -0.020 4.020 21 O -0.294 6.294 22 C -0.004 4.004 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.014 -11.208 8.758 14.260 hybrid contribution 0.095 1.184 -0.331 1.233 sum 1.109 -10.024 8.426 13.142 Atomic orbital electron populations 1.69652 1.05084 1.25748 1.57157 1.24718 0.95422 0.97584 1.02754 0.86265 0.78708 0.84092 0.77548 1.21745 1.21816 1.20751 1.19151 0.90819 0.83822 1.43168 0.91126 1.42451 1.05812 0.99401 1.88095 1.20057 0.94333 0.86137 0.91263 0.92695 1.21602 0.98585 0.97506 0.82941 1.46035 1.50439 1.21845 1.17909 1.20323 0.78334 0.84429 0.86638 1.90660 1.56949 1.22837 1.72672 1.22003 0.99494 1.02015 0.93112 0.87360 1.21376 1.00031 0.97351 0.95054 1.22233 0.98523 1.02519 0.96164 1.22629 0.91430 0.91757 0.96175 1.87988 1.70598 1.42241 1.28623 1.22525 0.93875 1.01628 0.82418 1.23034 0.92159 1.03090 0.99831 1.22963 0.97270 0.99825 1.03350 1.22781 1.03373 0.94036 0.99101 0.93447 0.78059 0.91681 0.91830 0.75270 0.90734 0.91103 0.90804 0.90634 0.88857 0.93169 0.92691 0.87963 0.89171 0.89543 0.90100 0.90228 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -5.98 8.63 -15.06 -0.13 -6.11 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -16.07 4.54 -53.43 -0.24 -16.32 16 10 C 0.19 3.49 2.70 -67.93 -0.18 3.31 16 11 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 12 C 0.12 1.97 5.21 -4.04 -0.02 1.95 16 13 N -0.71 -11.42 5.29 -60.29 -0.32 -11.74 16 14 C 0.52 8.28 7.16 -10.99 -0.08 8.20 16 15 O -0.55 -10.44 15.97 5.55 0.09 -10.35 16 16 C -0.14 -1.90 2.73 -91.63 -0.25 -2.15 16 17 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 18 C -0.10 -1.19 4.62 -26.55 -0.12 -1.31 16 19 C -0.16 -1.50 6.14 -26.59 -0.16 -1.66 16 20 C 0.06 0.55 6.84 37.21 0.25 0.81 16 21 O -0.38 -4.75 10.77 -35.23 -0.38 -5.13 16 22 C 0.07 0.89 6.00 37.21 0.22 1.11 16 23 C -0.16 -2.73 5.36 -90.62 -0.49 -3.22 16 24 C -0.20 -2.93 10.18 -26.69 -0.27 -3.20 16 25 C -0.16 -2.72 9.78 -26.69 -0.26 -2.98 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.39 9.52 7.80 -40.82 -0.32 9.20 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.41 6.66 7.61 -40.82 -0.31 6.35 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.22 7.64 -51.93 -0.40 0.82 16 39 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 40 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 2.05 6.23 -51.93 -0.32 1.73 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -29.26 347.44 -8.66 -37.92 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.16 Total: 15.47 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.58 Total: -5.59 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.16 Total: -53.88 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.29 Total: -15.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.26 -8.66 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752448481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.258 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds