Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00406 * 2 1 4 4 H 1.48494 * 109.47285 * 270.00305 * 3 2 1 5 5 H 1.48501 * 109.46856 * 30.00472 * 3 2 1 6 6 H 1.48500 * 109.46930 * 149.99949 * 3 2 1 7 7 C 1.38817 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99824 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00391 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00488 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47008 * 325.00353 * 10 9 7 12 12 C 1.52996 * 109.47509 * 205.00279 * 10 9 7 13 13 N 1.46498 * 109.47059 * 54.99655 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 H 1.09003 * 109.51759 * 299.87900 * 16 14 13 18 18 C 1.53173 * 109.52546 * 179.68769 * 16 14 13 19 19 C 1.53177 * 109.03687 * 183.11265 * 18 16 14 20 20 C 1.53095 * 109.15881 * 56.98263 * 19 18 16 21 21 O 1.42905 * 109.41705 * 302.38824 * 20 19 18 22 22 C 1.42898 * 114.09510 * 61.16176 * 21 20 19 23 23 C 1.53004 * 109.47171 * 84.99750 * 10 9 7 24 24 C 1.53002 * 117.49459 * 8.62473 * 23 10 9 25 25 C 1.52991 * 60.00049 * 252.51110 * 24 23 10 26 26 H 0.97005 * 119.99120 * 359.97438 * 1 2 3 27 27 H 0.97009 * 119.99600 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47066 * 294.99922 * 12 10 9 29 29 H 1.08994 * 109.46974 * 175.00070 * 12 10 9 30 30 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 31 31 H 1.09003 * 109.54113 * 302.98140 * 18 16 14 32 32 H 1.08999 * 109.54219 * 63.24822 * 18 16 14 33 33 H 1.08998 * 109.52626 * 297.07828 * 19 18 16 34 34 H 1.09000 * 109.52494 * 176.88615 * 19 18 16 35 35 H 1.09010 * 109.47879 * 182.40920 * 20 19 18 36 36 H 1.08997 * 109.49525 * 62.38084 * 20 19 18 37 37 H 1.08994 * 109.48047 * 178.86076 * 22 21 20 38 38 H 1.08998 * 109.48060 * 58.82586 * 22 21 20 39 39 H 1.08990 * 115.54870 * 154.33048 * 23 10 9 40 40 H 1.08999 * 117.50200 * 0.02562 * 24 23 10 41 41 H 1.09003 * 117.49500 * 145.01652 * 24 23 10 42 42 H 1.09008 * 117.49643 * 252.51368 * 25 24 23 43 43 H 1.09002 * 117.50521 * 107.49510 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5649 -3.2064 0.5887 12 6 5.4995 -2.2590 0.6080 13 7 5.3624 -1.6636 1.9395 14 6 6.4604 -1.3910 2.6720 15 8 7.5621 -1.6339 2.2268 16 6 6.3193 -0.7843 4.0443 17 1 5.8117 0.1773 3.9669 18 6 7.7072 -0.5838 4.6606 19 6 7.5481 -0.0399 6.0837 20 6 6.6851 -1.0074 6.8978 21 8 5.4203 -1.1731 6.2535 22 6 5.5037 -1.7230 4.9373 23 6 4.2576 -2.9759 -1.4381 24 6 3.8339 -2.0316 -2.5649 25 6 2.9738 -3.2501 -2.2239 26 1 -0.4849 0.8402 0.0004 27 1 3.8647 -0.3622 -0.0007 28 1 6.0785 -1.5917 -0.0305 29 1 6.0108 -3.2181 0.6897 30 1 4.4813 -1.4695 2.2957 31 1 8.2336 -1.5378 4.6915 32 1 8.2737 0.1275 4.0596 33 1 7.0659 0.9370 6.0485 34 1 8.5290 0.0536 6.5497 35 1 6.5329 -0.6043 7.8991 36 1 7.1869 -1.9725 6.9670 37 1 4.5006 -1.8354 4.5260 38 1 5.9902 -2.6974 4.9805 39 1 5.1100 -3.6296 -1.6225 40 1 3.4518 -1.0506 -2.2825 41 1 4.4077 -2.0639 -3.4910 42 1 2.9818 -4.0841 -2.9258 43 1 2.0255 -3.0710 -1.7172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752448482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -53.723580 kcal Electronic energy + Delta-G solvation = -23003.824404 eV Core-core repulsion = 19663.827565 eV Total energy + Delta-G solvation = -3339.996839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29174 -38.67896 -37.70769 -34.68195 -33.69074 -33.34415 -31.81134 -30.94100 -28.55746 -25.24994 -24.68511 -23.34771 -22.54586 -21.58936 -20.82270 -19.95048 -19.21647 -17.88210 -17.05590 -16.45044 -16.17688 -15.61451 -15.35423 -15.09072 -14.78596 -14.51781 -14.15909 -13.77357 -13.55918 -13.37619 -12.94630 -12.83416 -12.65626 -12.44939 -11.78018 -11.55810 -11.30281 -11.25866 -11.09804 -10.99893 -10.83541 -10.61263 -10.56732 -10.26850 -9.88728 -9.63961 -9.60650 -9.49086 -9.24249 -9.05454 -8.80885 -7.41516 -5.86825 -3.24004 2.74126 3.29179 3.32761 3.33577 3.40149 3.71932 4.48269 4.48991 4.50698 4.66611 4.69352 4.74938 4.95839 5.12601 5.17560 5.20821 5.29021 5.40209 5.43020 5.51592 5.59369 5.64931 5.67207 5.72811 5.77291 5.82450 5.92537 5.94784 5.96325 6.11716 6.25366 6.34711 6.53287 6.58894 6.75087 6.96513 6.98000 7.10833 7.74419 7.88830 8.31382 8.38380 9.08792 9.80961 9.99928 11.30743 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005039 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.693103 B = 5555.525248 C = 6489.032729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.093 0.907 9 N -0.743 5.743 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.115 3.885 13 N -0.715 5.715 14 C 0.517 3.483 15 O -0.549 6.549 16 C -0.146 4.146 17 H 0.106 0.894 18 C -0.100 4.100 19 C -0.157 4.157 20 C 0.057 3.943 21 O -0.376 6.376 22 C 0.072 3.928 23 C -0.179 4.179 24 C -0.165 4.165 25 C -0.170 4.170 26 H 0.260 0.740 27 H 0.363 0.637 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.410 0.590 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 -3.420 8.817 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.088 3.912 11 H 0.084 0.916 12 C -0.009 4.009 13 N -0.367 5.367 14 C 0.302 3.698 15 O -0.428 6.428 16 C -0.167 4.167 17 H 0.124 0.876 18 C -0.138 4.138 19 C -0.195 4.195 20 C -0.020 4.020 21 O -0.294 6.294 22 C -0.005 4.005 23 C -0.200 4.200 24 C -0.202 4.202 25 C -0.206 4.206 26 H 0.070 0.930 27 H 0.196 0.804 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.646 -3.606 8.589 16.523 hybrid contribution 0.387 1.358 -0.246 1.434 sum 14.033 -2.247 8.343 16.480 Atomic orbital electron populations 1.69687 1.05081 1.25888 1.56861 1.24637 0.95104 0.96963 1.01797 0.86671 0.79185 0.85415 0.77899 1.21117 1.21792 1.20372 1.19002 0.80254 0.94590 1.43657 0.88891 1.42847 1.04149 1.01769 1.89845 1.19962 0.89623 0.89512 0.92147 0.91603 1.21644 0.98460 0.98052 0.82759 1.46087 1.09574 1.63065 1.17976 1.20355 0.84513 0.78260 0.86658 1.90667 1.25957 1.53475 1.72679 1.22025 0.99658 1.01944 0.93118 0.87560 1.21380 0.94810 1.02553 0.95066 1.22235 1.00820 1.00270 0.96127 1.22634 0.84833 0.98349 0.96203 1.87988 1.28819 1.84249 1.28321 1.22533 1.00972 0.94597 0.82404 1.23003 0.98312 1.03671 0.95034 1.22831 1.03227 0.97189 0.96990 1.22887 0.96433 0.98636 1.02684 0.92968 0.80382 0.91732 0.91413 0.75337 0.90998 0.90775 0.90864 0.90562 0.88784 0.93093 0.87878 0.92549 0.89354 0.87223 0.91089 0.90849 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 20.91 27.74 -169.99 -4.71 16.20 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.25 -6.11 8.64 -15.06 -0.13 -6.24 16 8 H 0.09 2.52 7.14 -52.48 -0.37 2.14 16 9 N -0.74 -15.30 2.88 -53.43 -0.15 -15.45 16 10 C 0.20 3.39 2.86 -67.93 -0.19 3.19 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.12 1.79 5.21 -4.04 -0.02 1.77 16 13 N -0.72 -10.75 5.29 -60.30 -0.32 -11.07 16 14 C 0.52 7.79 7.16 -10.98 -0.08 7.71 16 15 O -0.55 -9.87 15.97 5.55 0.09 -9.78 16 16 C -0.15 -1.81 2.73 -91.63 -0.25 -2.06 16 17 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.10 -1.12 4.62 -26.55 -0.12 -1.25 16 19 C -0.16 -1.41 6.14 -26.59 -0.16 -1.58 16 20 C 0.06 0.52 6.84 37.21 0.25 0.78 16 21 O -0.38 -4.56 10.77 -35.23 -0.38 -4.94 16 22 C 0.07 0.84 6.00 37.21 0.22 1.06 16 23 C -0.18 -2.94 5.71 -90.62 -0.52 -3.46 16 24 C -0.17 -2.94 9.74 -26.73 -0.26 -3.20 16 25 C -0.17 -2.97 9.86 -26.74 -0.26 -3.24 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.36 7.68 5.66 -40.82 -0.23 7.45 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.41 6.15 7.61 -40.82 -0.31 5.84 16 31 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 1.17 7.64 -51.93 -0.40 0.77 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 40 H 0.11 2.28 6.68 -51.93 -0.35 1.93 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.11 2.23 6.23 -51.93 -0.32 1.91 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -29.72 341.40 -8.24 -37.95 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.06 Total: 14.89 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.62 Total: -6.29 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.30 Total: -53.18 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.29 Total: -14.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.72 -8.24 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752448482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.771 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds