Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08998 * 112.85361 * 336.46850 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77738 * 10 9 7 13 13 C 1.53780 * 87.08092 * 89.11527 * 12 10 9 14 14 H 1.09000 * 113.61877 * 270.88531 * 13 12 10 15 15 N 1.46501 * 113.61577 * 139.97897 * 13 12 10 16 16 C 1.34779 * 119.99785 * 107.50286 * 15 13 12 17 17 O 1.21288 * 120.00244 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00134 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47413 * 180.02562 * 18 16 15 20 20 O 1.42894 * 109.47627 * 180.02562 * 19 18 16 21 21 C 1.42898 * 114.00355 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47075 * 180.02562 * 21 20 19 23 23 C 1.53009 * 117.49538 * 243.61911 * 22 21 20 24 24 C 1.52996 * 59.99876 * 252.51055 * 23 22 21 25 25 C 1.53783 * 87.08328 * 25.43430 * 13 12 10 26 26 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.08998 * 113.61596 * 203.65958 * 12 10 9 29 29 H 1.08998 * 113.61243 * 334.56847 * 12 10 9 30 30 H 0.96996 * 120.00321 * 287.50637 * 15 13 12 31 31 H 1.08998 * 109.47020 * 300.00309 * 18 16 15 32 32 H 1.08999 * 109.46927 * 60.00125 * 18 16 15 33 33 H 1.09003 * 109.46952 * 300.00494 * 19 18 16 34 34 H 1.09002 * 109.46991 * 59.99548 * 19 18 16 35 35 H 1.09000 * 109.46551 * 299.99589 * 21 20 19 36 36 H 1.09000 * 109.47247 * 59.99788 * 21 20 19 37 37 H 1.08997 * 115.55660 * 29.32366 * 22 21 20 38 38 H 1.08998 * 117.49436 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49632 * 145.02094 * 23 22 21 40 40 H 1.09005 * 117.49957 * 252.50943 * 24 23 22 41 41 H 1.08994 * 117.50112 * 107.49259 * 24 23 22 42 42 H 1.09000 * 113.61551 * 220.02042 * 25 13 12 43 43 H 1.09004 * 113.69000 * 89.12178 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0656 -3.5621 -0.4098 12 6 1.9986 -4.4084 1.3352 13 6 0.7201 -5.0828 0.8105 14 1 -0.1907 -4.5288 1.0376 15 7 0.6233 -6.5040 1.1529 16 6 -0.2562 -6.9134 2.0884 17 8 -0.9680 -6.1053 2.6465 18 6 -0.3554 -8.3752 2.4411 19 6 -1.4216 -8.5681 3.5213 20 8 -1.5153 -9.9540 3.8562 21 6 -2.4884 -10.2447 4.8614 22 6 -2.5013 -11.7493 5.1388 23 6 -3.7857 -12.5160 4.8167 24 6 -3.3977 -12.2509 6.2727 25 6 1.2602 -4.8260 -0.6063 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.8273 -5.1004 1.4849 29 1 1.8285 -3.7581 2.1932 30 1 1.1923 -7.1503 0.7063 31 1 -0.6305 -8.9452 1.5537 32 1 0.6073 -8.7251 2.8138 33 1 -1.1470 -7.9979 4.4088 34 1 -2.3842 -8.2181 3.1483 35 1 -2.2364 -9.7090 5.7766 36 1 -3.4731 -9.9302 4.5156 37 1 -1.5540 -12.2647 4.9806 38 1 -4.6211 -11.9485 4.4068 39 1 -3.6834 -13.5361 4.4463 40 1 -3.0402 -13.0966 6.8603 41 1 -3.9781 -11.5091 6.8211 42 1 0.4940 -4.5129 -1.3156 43 1 1.8872 -5.6315 -0.9887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752629357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -33.771302 kcal Electronic energy + Delta-G solvation = -21126.029520 eV Core-core repulsion = 17786.897877 eV Total energy + Delta-G solvation = -3339.131643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93585 -38.75014 -38.00638 -36.80291 -34.03737 -32.74779 -31.66819 -29.66757 -27.32793 -25.11050 -24.82463 -23.60820 -22.78487 -22.34607 -21.07473 -20.26436 -18.73181 -17.58412 -17.34590 -16.62031 -16.34762 -15.96247 -15.55723 -15.13396 -14.84888 -14.66683 -14.00582 -13.73406 -13.56453 -13.37399 -13.04137 -12.68824 -12.16074 -12.01113 -11.94686 -11.82695 -11.70303 -11.58846 -11.31421 -10.89369 -10.83721 -10.79900 -10.55232 -10.26907 -10.13434 -9.93537 -9.75511 -9.72365 -9.57634 -8.92418 -8.70649 -7.00865 -5.79657 -3.09721 2.71375 2.91443 3.37390 3.42611 3.47964 3.50565 3.71591 4.41752 4.49238 4.55909 4.62873 4.66869 4.84841 4.93441 5.01986 5.10235 5.18088 5.22888 5.24544 5.29323 5.36662 5.39685 5.47322 5.47662 5.58859 5.65221 5.69502 5.81330 5.87382 5.99148 6.08866 6.21994 6.37235 6.61728 6.72535 6.78184 6.93775 7.03161 7.64567 7.69800 8.33951 8.38596 9.49364 10.05733 10.39663 11.42596 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041068 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.632077 B =12679.630871 C =13047.541145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.706 5.706 10 C 0.171 3.829 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.124 3.876 14 H 0.113 0.887 15 N -0.716 5.716 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.139 4.139 19 C 0.078 3.922 20 O -0.390 6.390 21 C 0.094 3.906 22 C -0.153 4.153 23 C -0.178 4.178 24 C -0.175 4.175 25 C -0.164 4.164 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.397 0.603 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 -25.183 6.938 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.226 4.226 13 C 0.020 3.980 14 H 0.131 0.869 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.418 6.418 18 C -0.179 4.179 19 C 0.001 3.999 20 O -0.310 6.310 21 C 0.018 3.982 22 C -0.172 4.172 23 C -0.215 4.215 24 C -0.212 4.212 25 C -0.204 4.204 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.011 -24.538 7.237 25.760 hybrid contribution 0.238 0.707 -0.042 0.747 sum -2.773 -23.831 7.196 25.048 Atomic orbital electron populations 1.69682 1.05154 1.25740 1.57178 1.24794 0.95552 0.97870 1.02636 0.86084 0.78767 0.83922 0.77187 1.20480 1.21818 1.21820 1.19322 0.91146 0.83891 1.43227 0.90850 1.42206 1.05773 0.99418 1.87004 1.20915 0.95269 0.85429 0.92594 0.91355 1.24312 0.96244 0.99750 1.02318 1.22657 0.99785 0.79478 0.96034 0.86877 1.46108 1.39927 1.09940 1.40654 1.20385 0.80001 0.90140 0.79656 1.90747 1.43288 1.55744 1.52010 1.21473 1.01548 0.94147 1.00745 1.22122 0.98622 0.81604 0.97549 1.87771 1.59545 1.25210 1.58454 1.21977 0.91707 0.93584 0.90938 1.22152 0.96331 0.94698 1.03984 1.23082 0.98443 1.01657 0.98325 1.22981 1.03216 1.03426 0.91564 1.23902 1.00750 0.99972 0.95815 0.93419 0.77980 0.91255 0.91060 0.76893 0.88192 0.88183 0.92292 0.92319 0.92747 0.93044 0.86826 0.88609 0.88598 0.88377 0.88596 0.90878 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.68 5.31 -52.64 -0.28 -17.96 16 10 C 0.17 3.33 4.56 -67.12 -0.31 3.02 16 11 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 12 C -0.18 -3.22 7.68 -25.92 -0.20 -3.42 16 13 C 0.12 2.04 4.12 -67.12 -0.28 1.76 16 14 H 0.11 2.26 7.47 -51.93 -0.39 1.88 16 15 N -0.72 -9.19 5.35 -53.01 -0.28 -9.47 16 16 C 0.51 7.16 7.83 -10.98 -0.09 7.07 16 17 O -0.54 -10.10 15.58 5.55 0.09 -10.01 16 18 C -0.14 -1.40 6.07 -27.88 -0.17 -1.56 16 19 C 0.08 0.87 5.23 37.16 0.19 1.06 16 20 O -0.39 -4.22 10.34 -35.23 -0.36 -4.59 16 21 C 0.09 0.84 6.22 37.16 0.23 1.07 16 22 C -0.15 -1.18 6.06 -90.62 -0.55 -1.73 16 23 C -0.18 -1.17 10.18 -26.73 -0.27 -1.44 16 24 C -0.17 -1.07 10.25 -26.73 -0.27 -1.34 16 25 C -0.16 -2.57 7.58 -25.91 -0.20 -2.77 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.39 10.36 7.90 -40.82 -0.32 10.04 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.40 3.68 8.73 -40.82 -0.36 3.33 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.43 7.88 -51.93 -0.41 0.02 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -32.85 361.73 -9.19 -42.04 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.35 Total: 10.39 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.15 Total: -5.66 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.16 Total: -55.00 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.28 Total: -14.60 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.85 -9.19 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752629357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.268 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds