Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48505 * 109.47084 * 270.00318 * 3 2 1 5 5 H 1.48498 * 109.47163 * 29.99601 * 3 2 1 6 6 H 1.48494 * 109.47448 * 150.00201 * 3 2 1 7 7 C 1.38813 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99705 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99691 * 180.02562 * 9 7 2 11 11 H 1.08993 * 112.85420 * 45.16969 * 10 9 7 12 12 C 1.53781 * 113.68971 * 176.44025 * 10 9 7 13 13 C 1.53776 * 87.08151 * 89.12435 * 12 10 9 14 14 H 1.09000 * 113.61779 * 139.98245 * 13 12 10 15 15 N 1.46503 * 113.61677 * 270.88262 * 13 12 10 16 16 C 1.34781 * 120.00228 * 255.82186 * 15 13 12 17 17 O 1.21285 * 119.99545 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00192 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47192 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46935 * 180.02562 * 19 18 16 21 21 H 1.08999 * 110.75546 * 57.01447 * 20 19 18 22 22 C 1.55309 * 110.84631 * 180.71277 * 20 19 18 23 23 C 1.54945 * 100.94056 * 152.31889 * 22 20 19 24 24 O 1.43643 * 105.14082 * 323.55558 * 23 22 20 25 25 C 1.43244 * 109.96987 * 24.42888 * 24 23 22 26 26 C 1.53783 * 87.08522 * 25.43270 * 13 12 10 27 27 H 0.96996 * 119.99935 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00327 * 0.02562 * 9 7 2 29 29 H 1.08998 * 113.61215 * 203.67290 * 12 10 9 30 30 H 1.08998 * 113.61284 * 334.49075 * 12 10 9 31 31 H 0.96998 * 119.99682 * 75.81385 * 15 13 12 32 32 H 1.08999 * 109.47408 * 299.99682 * 18 16 15 33 33 H 1.09004 * 109.47326 * 59.99288 * 18 16 15 34 34 H 1.09005 * 109.46954 * 299.99529 * 19 18 16 35 35 H 1.08993 * 109.47072 * 59.99868 * 19 18 16 36 36 H 1.08996 * 111.12430 * 270.24233 * 22 20 19 37 37 H 1.09004 * 111.12423 * 34.40495 * 22 20 19 38 38 H 1.09003 * 110.30616 * 204.63786 * 23 22 20 39 39 H 1.09002 * 110.30792 * 82.47164 * 23 22 20 40 40 H 1.08999 * 109.82731 * 238.77693 * 25 24 23 41 41 H 1.08997 * 109.90634 * 117.84506 * 25 24 23 42 42 H 1.08996 * 113.61697 * 220.02120 * 26 13 12 43 43 H 1.09001 * 113.61353 * 89.11177 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.8830 -3.6693 0.7118 12 6 1.1499 -4.8946 0.0869 13 6 1.0947 -4.8654 -1.4496 14 1 1.1417 -5.8536 -1.9071 15 7 0.0064 -4.0418 -1.9822 16 6 -1.0978 -4.6278 -2.4861 17 8 -1.1903 -5.8370 -2.4989 18 6 -2.2174 -3.7806 -3.0334 19 6 -3.3419 -4.6864 -3.5394 20 6 -4.4784 -3.8261 -4.0956 21 1 -4.1146 -3.1698 -4.8862 22 6 -5.6468 -4.7147 -4.6028 23 6 -6.8490 -3.7556 -4.4141 24 8 -6.5638 -3.0293 -3.2081 25 6 -5.1513 -3.0106 -2.9707 26 6 2.4507 -4.1414 -1.4063 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 1.6501 -5.7756 0.4891 30 1 0.1894 -4.6986 0.5635 31 1 0.0805 -3.0747 -1.9721 32 1 -2.6000 -3.1312 -2.2460 33 1 -1.8434 -3.1718 -3.8565 34 1 -2.9590 -5.3354 -4.3270 35 1 -3.7160 -5.2954 -2.7165 36 1 -5.5141 -4.9767 -5.6524 37 1 -5.7567 -5.6079 -3.9877 38 1 -7.7727 -4.3238 -4.3042 39 1 -6.9232 -3.0713 -5.2593 40 1 -4.9329 -3.4640 -2.0038 41 1 -4.7856 -1.9840 -2.9886 42 1 2.5397 -3.3370 -2.1364 43 1 3.3065 -4.8164 -1.4122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752722280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -65.055097 kcal Electronic energy + Delta-G solvation = -22466.928645 eV Core-core repulsion = 19126.440434 eV Total energy + Delta-G solvation = -3340.488210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97211 -39.43641 -37.93904 -34.51126 -33.64131 -32.55433 -30.94431 -29.90219 -28.61924 -25.28601 -24.94812 -24.12989 -22.71707 -22.05597 -20.51326 -19.84291 -18.69626 -17.37970 -16.95195 -16.75540 -15.82998 -15.52890 -15.31321 -14.80512 -14.79200 -14.39851 -13.89132 -13.75929 -13.27929 -13.21705 -13.14651 -12.94309 -12.21014 -11.91049 -11.81970 -11.62102 -11.44756 -11.40496 -11.10789 -10.95016 -10.86056 -10.83429 -10.60332 -10.35268 -10.24724 -9.82612 -9.60424 -9.57812 -9.45932 -8.97140 -8.52172 -7.09409 -5.90129 -3.19729 2.97677 3.36180 3.42788 3.43898 3.55311 3.79217 4.29612 4.48581 4.58601 4.76593 4.95090 5.02793 5.11443 5.13663 5.18468 5.26775 5.34092 5.42329 5.46868 5.49923 5.56308 5.59753 5.71089 5.73998 5.76000 5.83249 5.93664 5.96205 6.12364 6.13510 6.25371 6.33070 6.35702 6.59528 6.65252 6.84993 6.89295 7.11958 7.63086 8.01831 8.29339 8.63312 9.40388 9.95535 10.30754 11.32126 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.004239 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.595813 B = 6603.271222 C = 8169.753620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.052 0.948 12 C -0.164 4.164 13 C 0.126 3.874 14 H 0.087 0.913 15 N -0.701 5.701 16 C 0.514 3.486 17 O -0.559 6.559 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.123 4.123 21 H 0.086 0.914 22 C -0.152 4.152 23 C 0.050 3.950 24 O -0.387 6.387 25 C 0.051 3.949 26 C -0.179 4.179 27 H 0.257 0.743 28 H 0.384 0.616 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.415 0.585 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -8.838 -8.822 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.051 3.949 11 H 0.070 0.930 12 C -0.203 4.203 13 C 0.021 3.979 14 H 0.105 0.895 15 N -0.353 5.353 16 C 0.300 3.700 17 O -0.438 6.438 18 C -0.185 4.185 19 C -0.127 4.127 20 C -0.142 4.142 21 H 0.105 0.895 22 C -0.190 4.190 23 C -0.026 4.026 24 O -0.307 6.307 25 C -0.026 4.026 26 C -0.220 4.220 27 H 0.067 0.933 28 H 0.219 0.781 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.254 0.746 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.240 -9.411 -8.667 14.701 hybrid contribution 0.459 1.401 -0.130 1.480 sum -6.781 -8.010 -8.796 13.694 Atomic orbital electron populations 1.69636 1.05074 1.25949 1.57391 1.24737 0.95539 0.97717 1.02616 0.86176 0.78714 0.83662 0.77531 1.21673 1.21745 1.20737 1.19238 0.91224 0.83782 1.43120 0.90954 1.42251 1.05578 0.99470 1.87845 1.21202 0.94041 0.85990 0.93678 0.93025 1.23710 1.01111 0.99212 0.96290 1.21687 0.87415 0.94641 0.94197 0.89502 1.45972 1.17145 1.11516 1.60712 1.20643 0.83326 0.88673 0.77321 1.90640 1.80470 1.14779 1.57938 1.21719 0.94882 0.99173 1.02738 1.21267 0.93154 0.96879 1.01390 1.22800 0.95875 0.97305 0.98211 0.89540 1.23320 0.94256 0.98975 1.02419 1.23351 0.98190 0.93309 0.87771 1.88402 1.23424 1.75890 1.42936 1.23321 0.80366 1.00357 0.98510 1.24058 0.94973 1.00219 1.02798 0.93327 0.78075 0.89600 0.91366 0.74584 0.88348 0.88901 0.90861 0.90839 0.89966 0.90107 0.89988 0.92358 0.90801 0.90988 0.90718 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.47 4.41 -52.64 -0.23 -16.70 16 10 C 0.16 3.08 4.53 -67.11 -0.30 2.78 16 11 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.16 -2.74 7.58 -25.92 -0.20 -2.94 16 13 C 0.13 2.11 4.28 -67.12 -0.29 1.82 16 14 H 0.09 1.44 7.55 -51.93 -0.39 1.05 16 15 N -0.70 -11.93 4.95 -53.02 -0.26 -12.19 16 16 C 0.51 8.44 7.83 -10.99 -0.09 8.36 16 17 O -0.56 -10.60 15.63 5.55 0.09 -10.51 16 18 C -0.15 -1.88 5.55 -27.89 -0.15 -2.03 16 19 C -0.09 -1.03 3.89 -26.73 -0.10 -1.13 16 20 C -0.12 -1.24 3.03 -88.67 -0.27 -1.51 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.15 -1.34 6.62 -24.48 -0.16 -1.50 16 23 C 0.05 0.48 7.78 38.18 0.30 0.77 16 24 O -0.39 -5.00 11.36 -35.23 -0.40 -5.40 16 25 C 0.05 0.59 6.57 37.88 0.25 0.84 16 26 C -0.18 -2.98 7.61 -25.91 -0.20 -3.18 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.38 9.38 6.98 -40.82 -0.29 9.10 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.42 7.59 7.18 -40.82 -0.29 7.30 16 32 H 0.10 1.28 7.48 -51.93 -0.39 0.89 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -29.69 347.82 -8.54 -38.23 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -7.21 Total: 14.95 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.46 Total: -4.54 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.23 Total: -54.29 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.31 Total: -15.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.69 -8.54 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752722280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.827 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds