Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08996 * 112.84787 * 25.32815 * 10 9 7 12 12 C 1.53780 * 113.61139 * 156.53173 * 10 9 7 13 13 C 1.53791 * 87.08107 * 139.98168 * 12 10 9 14 14 H 1.08993 * 113.61431 * 89.19686 * 13 12 10 15 15 N 1.46496 * 113.61111 * 220.01843 * 13 12 10 16 16 C 1.34777 * 119.99970 * 204.99710 * 15 13 12 17 17 O 1.21284 * 119.99831 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00361 * 179.97438 * 16 15 13 19 19 C 1.53005 * 109.47215 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46818 * 180.02562 * 19 18 16 21 21 H 1.09002 * 110.80360 * 308.62274 * 20 19 18 22 22 C 1.54812 * 110.90339 * 184.99833 * 20 19 18 23 23 C 1.54101 * 104.18635 * 220.91977 * 22 20 19 24 24 O 1.43742 * 107.29474 * 357.96912 * 23 22 20 25 25 C 1.44382 * 106.97170 * 26.51547 * 24 23 22 26 26 C 1.53791 * 113.61264 * 254.13455 * 10 9 7 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08999 * 113.60991 * 254.52215 * 12 10 9 30 30 H 1.08993 * 113.61850 * 25.34502 * 12 10 9 31 31 H 0.97004 * 120.00322 * 24.99534 * 15 13 12 32 32 H 1.09009 * 109.46950 * 299.99895 * 18 16 15 33 33 H 1.08999 * 109.47158 * 59.99870 * 18 16 15 34 34 H 1.09002 * 109.46771 * 300.00071 * 19 18 16 35 35 H 1.08999 * 109.47379 * 59.99742 * 19 18 16 36 36 H 1.09006 * 110.48740 * 339.59691 * 22 20 19 37 37 H 1.08997 * 110.48882 * 102.11428 * 22 20 19 38 38 H 1.08998 * 109.87948 * 117.39516 * 23 22 20 39 39 H 1.08999 * 109.88186 * 238.54626 * 23 22 20 40 40 H 1.09002 * 110.61391 * 201.43931 * 25 24 23 41 41 H 1.08995 * 110.62131 * 78.43943 * 25 24 23 42 42 H 1.09000 * 113.61165 * 334.57015 * 26 10 9 43 43 H 1.08997 * 113.61059 * 105.47100 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5391 -3.2923 -0.4198 12 6 5.5417 -2.3592 -0.5447 13 6 5.9695 -3.3156 0.5811 14 1 5.9064 -4.3686 0.3070 15 7 7.2525 -2.9632 1.1943 16 6 7.9938 -3.9127 1.7988 17 8 7.5989 -5.0589 1.8347 18 6 9.3138 -3.5504 2.4292 19 6 9.9474 -4.8017 3.0407 20 6 11.2873 -4.4337 3.6812 21 1 11.9141 -3.8840 2.9790 22 6 12.0164 -5.6966 4.2009 23 6 12.6072 -5.2608 5.5559 24 8 12.2784 -3.8735 5.7391 25 6 11.0731 -3.6229 4.9846 26 6 4.7480 -2.8091 1.3695 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 5.6563 -2.7813 -1.5431 30 1 5.9677 -1.3600 -0.4561 31 1 7.5685 -2.0466 1.1653 32 1 9.9793 -3.1411 1.6690 33 1 9.1520 -2.8064 3.2091 34 1 9.2821 -5.2114 3.8007 35 1 10.1093 -5.5454 2.2604 36 1 11.3102 -6.5155 4.3383 37 1 12.8097 -5.9893 3.5131 38 1 12.1703 -5.8545 6.3588 39 1 13.6898 -5.3868 5.5460 40 1 10.9728 -2.5603 4.7635 41 1 10.1994 -3.9878 5.5245 42 1 4.9572 -1.9333 1.9837 43 1 4.2228 -3.5937 1.9141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752722281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = -64.341732 kcal Electronic energy + Delta-G solvation = -21565.568803 eV Core-core repulsion = 18225.111526 eV Total energy + Delta-G solvation = -3340.457276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20384 -39.63690 -38.14023 -34.82103 -34.20821 -32.76359 -31.24642 -30.45335 -28.93415 -25.38218 -25.27415 -24.10373 -22.81063 -21.70085 -20.74492 -20.39815 -19.49899 -17.56322 -17.10669 -16.90428 -16.26027 -16.03767 -15.84632 -15.24162 -14.79618 -14.42943 -14.23967 -14.01635 -13.49525 -13.23278 -13.20303 -12.73567 -12.58248 -12.21436 -12.08879 -11.93958 -11.80115 -11.72186 -11.40262 -11.09451 -11.06203 -10.87036 -10.82574 -10.52579 -10.33338 -10.13455 -10.05642 -9.75832 -9.60246 -8.98401 -8.84154 -7.31987 -5.81951 -3.18182 2.60504 3.16899 3.32109 3.34577 3.41017 3.57043 4.09228 4.32064 4.46169 4.53542 4.59889 4.66281 4.83263 4.85728 4.92240 4.99482 5.08105 5.17656 5.21389 5.26683 5.33068 5.37577 5.38829 5.40705 5.53514 5.58687 5.62029 5.73424 5.79966 5.95439 5.99822 6.06544 6.15692 6.35190 6.47184 6.50506 6.61334 6.91369 7.53511 7.94100 8.22219 8.37448 9.14606 9.86879 10.06261 11.36182 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.002544 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.565161 B =11002.967627 C =11444.339989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.735 5.735 10 C 0.174 3.826 11 H 0.087 0.913 12 C -0.161 4.161 13 C 0.117 3.883 14 H 0.111 0.889 15 N -0.717 5.717 16 C 0.510 3.490 17 O -0.545 6.545 18 C -0.144 4.144 19 C -0.093 4.093 20 C -0.123 4.123 21 H 0.087 0.913 22 C -0.153 4.153 23 C 0.046 3.954 24 O -0.381 6.381 25 C 0.048 3.952 26 C -0.176 4.176 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.225 -8.213 6.476 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.375 5.375 10 C 0.062 3.938 11 H 0.105 0.895 12 C -0.201 4.201 13 C 0.013 3.987 14 H 0.129 0.871 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.184 4.184 19 C -0.131 4.131 20 C -0.141 4.141 21 H 0.105 0.895 22 C -0.191 4.191 23 C -0.031 4.031 24 O -0.300 6.300 25 C -0.029 4.029 26 C -0.218 4.218 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 25.762 -8.936 6.611 28.058 hybrid contribution 0.572 1.609 -0.084 1.710 sum 26.334 -7.327 6.527 28.103 Atomic orbital electron populations 1.69700 1.05118 1.25904 1.57175 1.24709 0.95276 0.97282 1.01881 0.86536 0.79131 0.84964 0.77756 1.21034 1.21690 1.20417 1.19141 0.80597 0.94851 1.43299 0.89036 1.42702 1.04112 1.01788 1.88861 1.21338 0.89250 0.90282 0.92890 0.89457 1.23859 0.99263 0.99083 0.97905 1.22503 0.81502 0.99917 0.94820 0.87122 1.46087 1.21639 1.11593 1.57337 1.20678 0.86016 0.85505 0.78182 1.90696 1.72598 1.20013 1.58956 1.21734 0.94744 1.00367 1.01532 1.21301 0.94273 0.96719 1.00799 1.22803 0.97210 0.96408 0.97721 0.89487 1.23003 1.00601 0.98491 0.96999 1.23156 1.00589 0.83015 0.96333 1.88871 1.43333 1.26154 1.71648 1.23718 0.88044 1.00781 0.90336 1.24323 0.96105 1.00902 1.00465 0.92984 0.80492 0.91150 0.90209 0.76721 0.88878 0.88927 0.90732 0.90615 0.90242 0.90395 0.92383 0.89976 0.88886 0.91824 0.90347 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.63 27.74 -169.99 -4.72 16.91 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.31 6.51 56.52 0.37 -5.95 16 7 C -0.25 -6.91 10.45 -15.06 -0.16 -7.06 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.73 -16.80 5.21 -52.63 -0.27 -17.08 16 10 C 0.17 3.19 4.47 -67.11 -0.30 2.89 16 11 H 0.09 1.64 8.11 -51.93 -0.42 1.21 16 12 C -0.16 -2.29 7.58 -25.91 -0.20 -2.49 16 13 C 0.12 1.62 4.24 -67.02 -0.28 1.34 16 14 H 0.11 1.64 7.46 -51.93 -0.39 1.25 16 15 N -0.72 -8.11 5.36 -52.93 -0.28 -8.40 16 16 C 0.51 6.03 7.83 -10.99 -0.09 5.94 16 17 O -0.55 -8.65 15.58 5.55 0.09 -8.57 16 18 C -0.14 -1.09 5.60 -27.88 -0.16 -1.24 16 19 C -0.09 -0.73 3.90 -26.73 -0.10 -0.83 16 20 C -0.12 -0.81 3.10 -88.62 -0.27 -1.08 16 21 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 22 C -0.15 -0.95 6.60 -25.20 -0.17 -1.11 16 23 C 0.05 0.32 7.70 37.73 0.29 0.61 16 24 O -0.38 -3.63 11.52 -35.23 -0.41 -4.04 16 25 C 0.05 0.35 6.63 38.21 0.25 0.61 16 26 C -0.18 -2.89 7.69 -25.82 -0.20 -3.09 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.36 8.05 5.77 -40.82 -0.24 7.81 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.40 3.50 8.73 -40.82 -0.36 3.15 16 32 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.09 0.57 7.73 -51.93 -0.40 0.17 16 34 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -33.58 348.75 -8.31 -41.89 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.27 Total: 7.73 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.48 Total: -5.49 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.22 Total: -53.69 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.32 Total: -12.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.58 -8.31 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752722281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.452 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds