Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47400 * 300.00011 * 3 2 1 6 6 H 1.48502 * 109.47230 * 59.99516 * 3 2 1 7 7 C 1.38805 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00442 * 0.02562 * 7 2 1 10 10 C 1.47417 * 125.64888 * 13.58623 * 9 7 2 11 11 C 1.54909 * 104.83627 * 155.88914 * 10 9 7 12 12 C 1.55157 * 101.58126 * 37.01015 * 11 10 9 13 13 C 1.47020 * 125.64902 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.01576 * 300.53321 * 13 9 7 15 15 C 1.53000 * 109.88385 * 61.62576 * 13 9 7 16 16 N 1.46495 * 109.47345 * 182.37828 * 15 13 9 17 17 C 1.34781 * 120.00180 * 185.08588 * 16 15 13 18 18 O 1.21286 * 119.99663 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00330 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.47246 * 180.02562 * 19 17 16 21 21 H 1.08996 * 110.43397 * 305.70064 * 20 19 17 22 22 C 1.54813 * 110.48606 * 183.15411 * 20 19 17 23 23 C 1.55224 * 101.98534 * 220.51827 * 22 20 19 24 24 O 1.44378 * 103.56653 * 36.88289 * 23 22 20 25 25 C 1.43745 * 106.97718 * 320.01106 * 24 23 22 26 26 H 0.96997 * 120.00083 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.37056 * 37.04694 * 10 9 7 28 28 H 1.09007 * 110.45806 * 274.77762 * 10 9 7 29 29 H 1.09000 * 111.00389 * 278.93481 * 11 10 9 30 30 H 1.09007 * 111.03684 * 155.09356 * 11 10 9 31 31 H 1.08997 * 110.72284 * 206.13705 * 12 11 10 32 32 H 1.08996 * 110.87332 * 82.93104 * 12 11 10 33 33 H 1.09000 * 109.46946 * 302.38161 * 15 13 9 34 34 H 1.09000 * 109.47392 * 62.37249 * 15 13 9 35 35 H 0.96999 * 120.00326 * 5.09125 * 16 15 13 36 36 H 1.09009 * 109.46797 * 300.00456 * 19 17 16 37 37 H 1.08998 * 109.47429 * 59.99967 * 19 17 16 38 38 H 1.08997 * 110.90655 * 338.63980 * 22 20 19 39 39 H 1.08999 * 110.90452 * 102.24282 * 22 20 19 40 40 H 1.09001 * 110.51883 * 278.38600 * 23 22 20 41 41 H 1.09000 * 110.64532 * 155.43883 * 23 22 20 42 42 H 1.08996 * 109.87930 * 267.09087 * 25 24 23 43 43 H 1.09000 * 110.00680 * 146.00676 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1123 -2.5500 -0.2814 11 6 -0.2593 -4.0145 -0.7643 12 6 0.7666 -4.7456 0.1414 13 6 1.9027 -3.7106 0.2821 14 1 2.6958 -3.9313 -0.4324 15 6 2.4618 -3.7420 1.7059 16 7 3.0847 -5.0439 1.9573 17 6 3.5567 -5.3393 3.1847 18 8 3.4653 -4.5275 4.0812 19 6 4.1980 -6.6783 3.4433 20 6 4.6434 -6.7568 4.9050 21 1 5.2855 -5.9117 5.1530 22 6 5.3767 -8.0928 5.1770 23 6 4.8251 -8.4847 6.5740 24 8 3.4458 -8.0609 6.5245 25 6 3.4194 -6.7970 5.8403 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4256 -1.8592 -1.0641 28 1 -0.6985 -2.3882 0.6233 29 1 0.0115 -4.1082 -1.8160 30 1 -1.2693 -4.3850 -0.5885 31 1 1.1293 -5.6531 -0.3412 32 1 0.3316 -4.9753 1.1141 33 1 3.2066 -2.9545 1.8212 34 1 1.6519 -3.5831 2.4179 35 1 3.1575 -5.6933 1.2405 36 1 3.4781 -7.4712 3.2400 37 1 5.0640 -6.7982 2.7923 38 1 5.1113 -8.8412 4.4303 39 1 6.4560 -7.9442 5.2103 40 1 5.3621 -7.9532 7.3596 41 1 4.8904 -9.5623 6.7244 42 1 3.4782 -5.9831 6.5629 43 1 2.5034 -6.7083 5.2562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753098938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = -70.312299 kcal Electronic energy + Delta-G solvation = -22545.036131 eV Core-core repulsion = 19204.319952 eV Total energy + Delta-G solvation = -3340.716180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11733 -38.90296 -37.60216 -34.27957 -33.58449 -32.49329 -30.27477 -29.63811 -28.79989 -26.92305 -24.82293 -23.76105 -22.82986 -21.00671 -20.33042 -19.97012 -19.39911 -17.22659 -16.80908 -16.46622 -16.14056 -15.70874 -15.13456 -15.05205 -14.73087 -14.29529 -13.93274 -13.54821 -13.41607 -12.98441 -12.81438 -12.41944 -12.08684 -11.91113 -11.83237 -11.71208 -11.43294 -11.32830 -11.09610 -10.95666 -10.88325 -10.81973 -10.25603 -10.10518 -9.95878 -9.86428 -9.79082 -9.73237 -9.53919 -8.68452 -8.59236 -6.86658 -5.78129 -3.14891 2.85090 3.36990 3.42132 3.45624 3.46996 3.81135 4.29694 4.45799 4.51558 4.68527 4.86992 4.98980 5.10478 5.24010 5.31833 5.37498 5.39323 5.47012 5.48114 5.52811 5.60723 5.64835 5.66680 5.79039 5.89975 5.99473 6.04255 6.11999 6.22438 6.44050 6.52811 6.61003 6.68983 6.74579 6.80388 7.04134 7.50584 7.58886 7.77632 7.78004 8.23768 8.47584 9.15697 9.76300 10.43161 11.33594 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.003524 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.935371 B = 7944.271107 C = 8609.495524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.724 5.724 17 C 0.503 3.497 18 O -0.542 6.542 19 C -0.133 4.133 20 C -0.106 4.106 21 H 0.092 0.908 22 C -0.152 4.152 23 C 0.046 3.954 24 O -0.383 6.383 25 C 0.059 3.941 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -17.775 5.240 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.375 5.375 17 C 0.288 3.712 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.125 4.125 21 H 0.110 0.890 22 C -0.190 4.190 23 C -0.031 4.031 24 O -0.303 6.303 25 C -0.018 4.018 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.836 -17.006 5.944 19.646 hybrid contribution 0.677 0.801 -0.406 1.124 sum 8.513 -16.206 5.538 19.125 Atomic orbital electron populations 1.69948 1.05011 1.25201 1.56002 1.24905 0.95696 0.97884 1.01447 0.86063 0.78889 0.83649 0.77271 1.20393 1.21696 1.21586 1.19030 0.90419 0.82192 1.44526 0.90595 1.44494 1.05791 1.00782 1.80292 1.21470 0.84654 0.90302 0.98904 1.23006 0.97486 0.99596 0.98640 1.22601 0.97092 0.96935 0.99760 1.21124 0.94395 0.88037 0.92105 0.94574 1.22225 0.97397 0.82670 0.99364 1.46171 1.60654 1.19208 1.11444 1.20616 0.78769 0.88995 0.82779 1.90717 1.57069 1.50389 1.43804 1.21769 1.01937 0.96047 0.97600 1.22295 0.97515 0.98461 0.94191 0.88996 1.23271 1.00690 0.96975 0.98059 1.23556 0.82979 1.00352 0.96217 1.88868 1.25406 1.37470 1.78523 1.23191 0.98460 0.85690 0.94457 0.93637 0.90758 0.95699 0.92302 0.92337 0.92446 0.91851 0.91647 0.91639 0.77159 0.88722 0.88730 0.90254 0.90066 0.92284 0.89145 0.91812 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.62 10.54 55.49 0.58 -26.04 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.37 9.77 -15.06 -0.15 -6.52 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.55 3.13 -162.57 -0.51 -15.05 16 10 C 0.17 4.07 5.43 -2.53 -0.01 4.06 16 11 C -0.15 -2.70 7.08 -24.58 -0.17 -2.87 16 12 C -0.13 -2.06 6.10 -24.89 -0.15 -2.21 16 13 C 0.15 2.95 3.22 -66.95 -0.22 2.73 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.06 5.07 -4.04 -0.02 2.04 16 16 N -0.72 -10.30 5.33 -60.30 -0.32 -10.63 16 17 C 0.50 7.26 7.38 -10.99 -0.08 7.18 16 18 O -0.54 -10.18 15.17 5.55 0.08 -10.10 16 19 C -0.13 -1.30 4.90 -27.88 -0.14 -1.43 16 20 C -0.11 -1.08 2.64 -89.09 -0.24 -1.32 16 21 H 0.09 1.04 7.96 -51.93 -0.41 0.62 16 22 C -0.15 -1.16 6.73 -24.60 -0.17 -1.32 16 23 C 0.05 0.39 7.72 38.34 0.30 0.69 16 24 O -0.38 -4.73 11.52 -35.23 -0.41 -5.13 16 25 C 0.06 0.72 6.39 37.73 0.24 0.96 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.07 1.97 6.86 -51.93 -0.36 1.61 16 28 H 0.02 0.65 8.08 -51.92 -0.42 0.23 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 33 H 0.07 1.42 7.92 -51.93 -0.41 1.01 16 34 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 35 H 0.40 4.34 8.33 -40.82 -0.34 4.00 16 36 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.10 7.37 -51.93 -0.38 0.72 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -32.26 342.30 -8.66 -40.93 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.33 Total: 1.97 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.90 Total: 1.83 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.24 Total: -51.72 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.32 Total: -15.23 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.26 -8.66 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.386 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds