Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99926 * 2 1 4 4 H 1.48494 * 109.47653 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 120.00889 * 3 2 1 6 6 H 1.48504 * 109.47064 * 240.00231 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65105 * 346.30604 * 9 7 2 11 11 C 1.54911 * 104.83528 * 204.09577 * 10 9 7 12 12 C 1.55153 * 101.58094 * 322.98950 * 11 10 9 13 13 C 1.47026 * 125.64583 * 166.00382 * 9 7 2 14 14 H 1.08999 * 109.88554 * 59.55655 * 13 9 7 15 15 C 1.53000 * 109.88126 * 298.38754 * 13 9 7 16 16 N 1.46499 * 109.46871 * 175.48084 * 15 13 9 17 17 C 1.34783 * 119.99816 * 184.66989 * 16 15 13 18 18 O 1.21280 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00004 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47063 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.43835 * 303.90918 * 20 19 17 22 22 C 1.54813 * 110.48727 * 181.22201 * 20 19 17 23 23 C 1.54997 * 102.09255 * 220.44511 * 22 20 19 24 24 O 1.44381 * 103.48873 * 37.02456 * 23 22 20 25 25 C 1.43751 * 106.97501 * 319.93576 * 24 23 22 26 26 H 0.97003 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.36368 * 322.93456 * 10 9 7 28 28 H 1.09000 * 110.36820 * 85.14317 * 10 9 7 29 29 H 1.09001 * 111.00432 * 81.06547 * 11 10 9 30 30 H 1.08994 * 111.00607 * 204.91718 * 11 10 9 31 31 H 1.09000 * 110.72052 * 153.86598 * 12 11 10 32 32 H 1.09002 * 110.72196 * 276.96445 * 12 11 10 33 33 H 1.08999 * 109.47189 * 295.47392 * 15 13 9 34 34 H 1.09000 * 109.47195 * 55.48010 * 15 13 9 35 35 H 0.96997 * 120.00110 * 4.66097 * 16 15 13 36 36 H 1.08992 * 109.47260 * 300.00130 * 19 17 16 37 37 H 1.09005 * 109.47065 * 59.99691 * 19 17 16 38 38 H 1.09002 * 110.90786 * 338.64396 * 22 20 19 39 39 H 1.09001 * 110.90968 * 102.24709 * 22 20 19 40 40 H 1.09002 * 110.61917 * 278.52285 * 23 22 20 41 41 H 1.08993 * 110.75569 * 155.58473 * 23 22 20 42 42 H 1.09003 * 109.88066 * 267.09144 * 25 24 23 43 43 H 1.08997 * 109.87551 * 145.94190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1119 -2.5502 0.2836 11 6 -0.2582 -4.0154 0.7650 12 6 0.7661 -4.7454 -0.1433 13 6 1.9010 -3.7097 -0.2900 14 1 2.6968 -3.9314 0.4210 15 6 2.4519 -3.7360 -1.7171 16 7 3.1181 -5.0180 -1.9597 17 6 3.7639 -5.2323 -3.1232 18 8 3.7930 -4.3640 -3.9694 19 6 4.4497 -6.5509 -3.3726 20 6 5.1002 -6.5335 -4.7573 21 1 4.3591 -6.3051 -5.5232 22 6 5.7865 -7.8898 -5.0506 23 6 7.0974 -7.4463 -5.7485 24 8 7.4652 -6.2428 -5.0407 25 6 6.2520 -5.5105 -4.7992 26 1 -0.4850 0.8401 0.0004 27 1 -0.4238 -1.8603 1.0677 28 1 -0.6982 -2.3858 -0.6205 29 1 0.0143 -4.1103 1.8161 30 1 -1.2685 -4.3850 0.5900 31 1 1.1295 -5.6536 0.3376 32 1 0.3264 -4.9743 -1.1141 33 1 1.6325 -3.6127 -2.4253 34 1 3.1681 -2.9244 -1.8452 35 1 3.0946 -5.7125 -1.2830 36 1 5.2148 -6.7117 -2.6133 37 1 3.7166 -7.3562 -3.3260 38 1 6.0003 -8.4257 -4.1257 39 1 5.1766 -8.4979 -5.7187 40 1 6.9179 -7.2323 -6.8021 41 1 7.8700 -8.2072 -5.6388 42 1 6.0838 -4.7958 -5.6049 43 1 6.3183 -4.9877 -3.8452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753098939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = -70.162662 kcal Electronic energy + Delta-G solvation = -22537.707748 eV Core-core repulsion = 19196.998057 eV Total energy + Delta-G solvation = -3340.709691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12120 -38.89431 -37.60379 -34.27626 -33.57557 -32.49151 -30.27507 -29.63659 -28.79967 -26.91660 -24.81829 -23.75659 -22.81955 -21.01335 -20.33903 -19.94529 -19.39409 -17.18974 -16.85887 -16.46650 -16.15439 -15.67539 -15.16018 -14.98575 -14.73332 -14.32231 -13.90138 -13.59050 -13.32370 -12.96461 -12.86528 -12.37692 -12.10947 -11.89312 -11.83467 -11.74039 -11.43447 -11.35104 -11.08514 -10.95537 -10.87903 -10.78144 -10.23340 -10.14191 -9.95160 -9.86800 -9.77463 -9.72942 -9.52775 -8.70606 -8.57149 -6.86003 -5.77484 -3.14287 2.85439 3.38496 3.43589 3.45422 3.47436 3.82725 4.30398 4.46740 4.52106 4.69544 4.87870 4.99653 5.10965 5.24456 5.31795 5.37200 5.39058 5.46901 5.48837 5.52987 5.60842 5.65164 5.67894 5.78729 5.92052 5.99657 6.03502 6.12240 6.21245 6.43969 6.52364 6.60365 6.69616 6.76153 6.80086 7.04315 7.50227 7.58712 7.77804 7.78274 8.24500 8.47952 9.16400 9.76941 10.43746 11.34144 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.003709 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.423889 B = 7546.999877 C = 8624.303250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.724 5.724 17 C 0.503 3.497 18 O -0.542 6.542 19 C -0.133 4.133 20 C -0.105 4.105 21 H 0.091 0.909 22 C -0.152 4.152 23 C 0.046 3.954 24 O -0.384 6.384 25 C 0.059 3.941 26 H 0.254 0.746 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -18.139 -5.684 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.375 5.375 17 C 0.288 3.712 18 O -0.419 6.419 19 C -0.174 4.174 20 C -0.124 4.124 21 H 0.110 0.890 22 C -0.190 4.190 23 C -0.031 4.031 24 O -0.303 6.303 25 C -0.018 4.018 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.241 -17.146 -6.200 19.617 hybrid contribution 0.097 0.525 0.175 0.561 sum 7.337 -16.621 -6.025 19.141 Atomic orbital electron populations 1.69928 1.05023 1.25437 1.55864 1.24902 0.95686 0.97876 1.01360 0.86219 0.78598 0.83014 0.78072 1.21534 1.21043 1.20919 1.18944 0.90389 0.82206 1.44770 0.90686 1.44494 1.05899 1.00869 1.80073 1.21474 0.84683 0.90283 0.98898 1.23000 0.97443 0.99604 0.98653 1.22618 0.97145 0.96984 0.99742 1.21135 0.94426 0.88046 0.92092 0.94504 1.22228 0.96686 0.83576 0.99157 1.46180 1.54755 1.18593 1.17979 1.20619 0.79029 0.89338 0.82185 1.90717 1.60594 1.46036 1.44590 1.21766 1.00934 0.96321 0.98330 1.22288 0.98236 0.94712 0.97174 0.89048 1.23230 0.96948 0.97097 1.01701 1.23515 0.96275 0.87485 0.95842 1.88876 1.29967 1.34585 1.76882 1.23204 0.82520 0.93833 1.02230 0.93541 0.90771 0.95705 0.92284 0.92344 0.92408 0.91894 0.92111 0.91152 0.77165 0.88714 0.88743 0.90241 0.90099 0.92308 0.89164 0.91781 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.54 55.49 0.58 -26.08 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.45 9.72 -15.06 -0.15 -6.59 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.56 3.13 -162.56 -0.51 -15.07 16 10 C 0.17 4.06 5.43 -2.53 -0.01 4.04 16 11 C -0.15 -2.67 7.09 -24.58 -0.17 -2.84 16 12 C -0.13 -2.05 6.08 -24.89 -0.15 -2.20 16 13 C 0.15 2.95 3.22 -66.94 -0.22 2.73 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.07 5.10 -4.04 -0.02 2.05 16 16 N -0.72 -10.35 5.41 -60.29 -0.33 -10.68 16 17 C 0.50 7.30 7.34 -10.98 -0.08 7.22 16 18 O -0.54 -10.22 15.07 5.56 0.08 -10.14 16 19 C -0.13 -1.30 4.94 -27.88 -0.14 -1.44 16 20 C -0.10 -1.08 2.67 -89.09 -0.24 -1.32 16 21 H 0.09 1.02 8.02 -51.93 -0.42 0.60 16 22 C -0.15 -1.16 6.71 -24.72 -0.17 -1.33 16 23 C 0.05 0.40 7.72 38.21 0.29 0.69 16 24 O -0.38 -4.84 11.52 -35.23 -0.41 -5.25 16 25 C 0.06 0.74 6.31 37.73 0.24 0.98 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.07 1.96 6.86 -51.93 -0.36 1.60 16 28 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 33 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 34 H 0.07 1.56 7.86 -51.93 -0.41 1.15 16 35 H 0.40 4.36 8.25 -40.82 -0.34 4.02 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.15 7.26 -51.93 -0.38 0.78 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.33 341.89 -8.67 -41.00 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.32 Total: 2.03 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.91 Total: 1.86 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.25 Total: -51.83 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.32 Total: -15.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.33 -8.67 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.166 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds