Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 N 1.46503 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00348 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.53176 * 109.54217 * 299.55582 * 15 13 12 17 17 C 1.53086 * 109.16363 * 183.14810 * 16 15 13 18 18 O 1.42906 * 109.41247 * 57.61304 * 17 16 15 19 19 C 1.42901 * 114.09590 * 298.83771 * 18 17 16 20 20 C 1.53092 * 109.41564 * 61.16177 * 19 18 17 21 21 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 22 22 C 1.53004 * 117.49740 * 3.23544 * 21 9 7 23 23 C 1.52995 * 117.49870 * 294.57853 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 25 25 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 26 26 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 27 27 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 28 28 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 29 29 H 0.96998 * 120.00121 * 0.02562 * 12 11 10 30 30 H 1.09000 * 109.53960 * 59.82212 * 15 13 12 31 31 H 1.08998 * 109.52415 * 303.05908 * 16 15 13 32 32 H 1.09008 * 109.52042 * 63.24354 * 16 15 13 33 33 H 1.08994 * 109.48458 * 297.62708 * 17 16 15 34 34 H 1.09001 * 109.48004 * 177.58771 * 17 16 15 35 35 H 1.09004 * 109.48186 * 301.17630 * 19 18 17 36 36 H 1.08998 * 109.49263 * 181.14597 * 19 18 17 37 37 H 1.09003 * 109.52535 * 182.49122 * 20 19 18 38 38 H 1.08999 * 109.52458 * 62.29412 * 20 19 18 39 39 H 1.08999 * 115.55313 * 148.90890 * 21 9 7 40 40 H 1.09001 * 117.49599 * 0.02562 * 22 21 9 41 41 H 1.09000 * 117.49619 * 145.02077 * 22 21 9 42 42 H 1.09002 * 117.50220 * 214.97803 * 23 21 9 43 43 H 1.09001 * 117.50083 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 7 0.2333 -2.4040 3.9865 13 6 0.6641 -2.5439 5.2559 14 8 1.8424 -2.7232 5.4801 15 6 -0.3185 -2.4787 6.3967 16 6 -1.0105 -1.1121 6.3994 17 6 -1.9480 -1.0260 7.6066 18 8 -1.1998 -1.2392 8.8053 19 6 -0.5693 -2.5195 8.8796 20 6 0.4236 -2.6656 7.7236 21 6 1.7038 -3.6308 -0.1889 22 6 2.7655 -3.6430 -1.2906 23 6 1.2874 -3.8147 -1.6495 24 1 -0.4849 0.8377 0.0621 25 1 -0.0521 -1.3118 1.5491 26 1 -0.2970 -3.0714 1.4387 27 1 1.6860 -3.4377 2.8816 28 1 1.9309 -1.6781 2.9920 29 1 -0.7093 -2.2617 3.8072 30 1 -1.0636 -3.2659 6.2815 31 1 -0.2602 -0.3241 6.4639 32 1 -1.5865 -0.9936 5.4816 33 1 -2.7221 -1.7885 7.5208 34 1 -2.4109 -0.0396 7.6377 35 1 -1.3255 -3.3016 8.8105 36 1 -0.0391 -2.6093 9.8277 37 1 0.8731 -3.6582 7.7527 38 1 1.2029 -1.9090 7.8148 39 1 1.6463 -4.5015 0.4643 40 1 3.2386 -2.6943 -1.5440 41 1 3.4061 -4.5219 -1.3624 42 1 0.9562 -4.8064 -1.9575 43 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753150319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = -47.468316 kcal Electronic energy + Delta-G solvation = -22628.190098 eV Core-core repulsion = 19288.464507 eV Total energy + Delta-G solvation = -3339.725590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16247 -38.49643 -37.13134 -34.79444 -33.79748 -33.18291 -31.28264 -30.75638 -27.92869 -25.78752 -24.30165 -23.63760 -21.91280 -21.35280 -20.95657 -19.90733 -19.61363 -17.30384 -16.36064 -16.20094 -15.94801 -15.60189 -15.28823 -15.07233 -14.82878 -14.44346 -14.15062 -13.84191 -13.64752 -13.08815 -12.67630 -12.60600 -12.44765 -11.96654 -11.63619 -11.54943 -11.47746 -11.06672 -10.89737 -10.77833 -10.73955 -10.59271 -10.35365 -10.15552 -9.95865 -9.88296 -9.67570 -9.42172 -9.26820 -8.59676 -8.50042 -6.68146 -5.88854 -3.49185 2.90942 3.31819 3.38020 3.41867 3.49735 3.72531 4.39464 4.50651 4.63945 4.70228 4.83002 4.88896 5.02266 5.15206 5.24684 5.26498 5.29109 5.44902 5.45825 5.49723 5.67640 5.86382 5.86501 5.98092 6.00982 6.07402 6.16347 6.18026 6.26454 6.46534 6.49210 6.58410 6.83921 6.94929 6.99929 7.03535 7.17928 7.48818 7.72608 7.89489 8.37360 8.56053 9.04865 9.67554 10.22340 11.07541 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.004128 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.438352 B = 6780.831420 C = 7620.788469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.136 3.864 11 C 0.099 3.901 12 N -0.719 5.719 13 C 0.512 3.488 14 O -0.546 6.546 15 C -0.110 4.110 16 C -0.149 4.149 17 C 0.063 3.937 18 O -0.384 6.384 19 C 0.061 3.939 20 C -0.135 4.135 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.256 0.744 25 H 0.106 0.894 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.397 0.603 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 -5.388 12.285 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.188 4.188 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.264 5.264 10 C 0.009 3.991 11 C -0.026 4.026 12 N -0.369 5.369 13 C 0.297 3.703 14 O -0.424 6.424 15 C -0.131 4.131 16 C -0.187 4.187 17 C -0.013 4.013 18 O -0.303 6.303 19 C -0.016 4.016 20 C -0.173 4.173 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.260 4.260 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.827 -5.209 12.502 14.378 hybrid contribution 0.002 0.671 -0.542 0.863 sum -4.825 -4.538 11.960 13.672 Atomic orbital electron populations 1.70026 1.05496 1.26253 1.50878 1.25110 0.95020 0.98786 0.99881 0.86460 0.79316 0.83150 0.78498 1.20550 1.21513 1.20748 1.19067 0.94551 0.85441 1.39829 0.91456 1.43218 1.49185 1.01704 1.32295 1.21100 0.90969 1.03545 0.83445 1.22315 0.92767 1.00938 0.86630 1.46104 1.12043 1.72616 1.06174 1.20456 0.89251 0.76640 0.83979 1.90680 1.17854 1.49279 1.84606 1.21377 0.97859 0.99328 0.94543 1.22212 1.00115 0.96565 0.99807 1.22579 0.92737 1.02049 0.83974 1.87936 1.67854 1.35104 1.39407 1.22628 0.94754 0.85247 0.98926 1.22009 0.98642 1.04074 0.92613 1.21233 1.00665 0.89932 0.87184 1.23040 0.91923 1.01963 1.06382 1.23357 0.97419 1.00676 1.04597 0.93454 0.87674 0.95084 0.93250 0.91653 0.76993 0.88712 0.90267 0.89961 0.92962 0.88512 0.93189 0.88653 0.90225 0.90121 0.89512 0.88414 0.90678 0.91176 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.98 11.33 55.49 0.63 -23.35 16 2 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 3 Si 0.90 21.10 29.61 -169.99 -5.03 16.07 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.80 8.63 -15.06 -0.13 -6.93 16 8 H 0.07 1.78 6.55 -52.49 -0.34 1.44 16 9 N -0.55 -13.04 2.78 -165.67 -0.46 -13.50 16 10 C 0.14 2.95 5.45 -4.04 -0.02 2.93 16 11 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 12 N -0.72 -11.56 5.46 -60.29 -0.33 -11.89 16 13 C 0.51 8.27 7.16 -10.98 -0.08 8.19 16 14 O -0.55 -11.09 15.97 5.56 0.09 -11.01 16 15 C -0.11 -1.28 2.61 -91.59 -0.24 -1.52 16 16 C -0.15 -1.58 5.30 -26.60 -0.14 -1.72 16 17 C 0.06 0.59 6.84 37.20 0.25 0.84 16 18 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 19 C 0.06 0.58 6.84 37.21 0.25 0.83 16 20 C -0.14 -1.55 4.73 -26.59 -0.13 -1.68 16 21 C 0.12 2.49 6.56 -67.93 -0.45 2.05 16 22 C -0.19 -3.81 9.80 -26.69 -0.26 -4.07 16 23 C -0.22 -4.38 10.36 -26.70 -0.28 -4.66 16 24 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 25 H 0.11 2.54 5.36 -51.93 -0.28 2.26 16 26 H 0.03 0.62 8.07 -51.93 -0.42 0.21 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.40 5.32 7.99 -40.82 -0.33 4.99 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.78 7.70 -51.92 -0.40 0.38 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.08 8.02 -51.93 -0.42 0.67 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -30.39 346.70 -8.73 -39.12 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.15 Total: 7.60 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.32 Total: -3.56 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.16 Total: -48.74 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.29 Total: -15.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.39 -8.73 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753150319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.347 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds