Wall clock time and date at job start Tue Mar 31 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47017 * 239.99905 * 3 2 1 5 5 H 1.48496 * 109.46823 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47133 * 119.99311 * 3 2 1 7 7 C 1.38817 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99875 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00027 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47324 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99734 * 127.16619 * 11 10 9 13 13 C 1.50696 * 120.00537 * 7.33607 * 12 11 10 14 14 N 1.46502 * 109.47006 * 127.15915 * 13 12 11 15 15 C 1.34774 * 119.99706 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00348 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00127 * 180.02562 * 15 14 13 18 18 C 1.52995 * 109.47756 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47538 * 180.02562 * 18 17 15 20 20 H 1.08999 * 110.32769 * 307.24824 * 19 18 17 21 21 C 1.54478 * 110.37265 * 184.99762 * 19 18 17 22 22 C 1.54500 * 104.06632 * 217.18817 * 21 19 18 23 23 C 1.54482 * 104.06304 * 0.02562 * 22 21 19 24 24 O 1.44427 * 104.80377 * 23.97564 * 23 22 21 25 25 H 0.96996 * 119.99792 * 0.02562 * 1 2 3 26 26 H 0.97006 * 119.99970 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46971 * 60.00086 * 10 9 7 28 28 H 1.09008 * 109.47328 * 300.00098 * 10 9 7 29 29 H 1.07998 * 119.99829 * 307.17158 * 11 10 9 30 30 H 1.08000 * 119.99479 * 187.60971 * 12 11 10 31 31 H 1.08993 * 109.47446 * 247.16670 * 13 12 11 32 32 H 1.09001 * 109.46957 * 7.16835 * 13 12 11 33 33 H 0.96996 * 120.00065 * 0.02562 * 14 13 12 34 34 H 1.09002 * 109.47459 * 300.00341 * 17 15 14 35 35 H 1.09005 * 109.47189 * 60.00232 * 17 15 14 36 36 H 1.09005 * 109.46864 * 300.00064 * 18 17 15 37 37 H 1.08997 * 109.47053 * 59.99902 * 18 17 15 38 38 H 1.09003 * 110.51377 * 335.83957 * 21 19 18 39 39 H 1.09001 * 110.51078 * 98.40495 * 21 19 18 40 40 H 1.08999 * 110.51267 * 118.64760 * 22 21 19 41 41 H 1.09004 * 110.51580 * 241.22068 * 22 21 19 42 42 H 1.08994 * 110.37988 * 142.81180 * 23 22 21 43 43 H 1.09005 * 110.36812 * 265.15085 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8023 -0.0001 12 6 1.1744 -5.7453 -0.9044 13 6 2.3562 -5.7760 -1.8390 14 7 2.9813 -7.1001 -1.7924 15 6 4.0639 -7.3612 -2.5516 16 8 4.5208 -6.4999 -3.2729 17 6 4.7067 -8.7234 -2.5042 18 6 5.9072 -8.7542 -3.4520 19 6 6.5594 -10.1374 -3.4043 20 1 6.7830 -10.4153 -2.3743 21 6 7.8470 -10.1546 -4.2577 22 6 7.8504 -11.5579 -4.9040 23 6 6.5641 -12.2224 -4.3653 24 8 5.6973 -11.1207 -4.0178 25 1 -0.4849 0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0002 27 1 2.6846 -3.7145 0.8905 28 1 2.6848 -3.7146 -0.8895 29 1 0.2980 -4.8456 0.7449 30 1 0.4042 -6.4982 -0.9829 31 1 2.0213 -5.5677 -2.8551 32 1 3.0808 -5.0212 -1.5334 33 1 2.6161 -7.7888 -1.2153 34 1 5.0411 -8.9323 -1.4880 35 1 3.9821 -9.4780 -2.8105 36 1 5.5732 -8.5453 -4.4683 37 1 6.6317 -7.9998 -3.1453 38 1 7.8074 -9.3809 -5.0245 39 1 8.7254 -10.0205 -3.6263 40 1 7.8124 -11.4781 -5.9904 41 1 8.7319 -12.1192 -4.5939 42 1 6.1035 -12.8389 -5.1372 43 1 6.7878 -12.8221 -3.4829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754097358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:39 Heat of formation + Delta-G solvation = -63.447350 kcal Electronic energy + Delta-G solvation = -21032.192319 eV Core-core repulsion = 17691.773826 eV Total energy + Delta-G solvation = -3340.418493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03550 -39.39419 -36.58298 -34.48465 -33.79266 -32.78648 -32.40326 -30.46272 -29.05708 -26.60856 -25.08028 -23.99121 -22.46370 -22.04882 -21.24955 -20.32481 -18.65684 -17.24415 -16.80799 -16.69721 -16.30365 -16.04310 -15.74733 -15.38312 -14.85982 -14.38796 -14.10820 -13.76892 -13.41267 -13.30920 -13.21142 -13.10763 -12.59539 -12.31069 -12.17707 -11.98768 -11.78395 -11.70272 -11.28577 -11.12873 -10.99731 -10.94066 -10.77034 -10.41972 -10.12242 -10.04502 -9.87998 -9.74955 -9.12027 -8.99332 -8.56973 -6.90545 -5.75260 -3.04438 2.29066 2.69761 3.39818 3.46816 3.50612 3.52238 3.52388 4.21247 4.31900 4.52623 4.62872 4.63736 4.67077 4.81647 4.95554 5.02829 5.11123 5.23788 5.26821 5.30490 5.32840 5.43040 5.47431 5.57566 5.57724 5.67260 5.71870 5.79841 5.92930 5.99291 6.01135 6.28009 6.38635 6.50161 6.56323 6.61575 6.89777 7.16763 7.55538 7.71271 8.28023 8.43242 9.54424 10.10471 10.45912 11.47452 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.002235 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.062665 B =12523.613056 C =13189.059273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.139 3.861 14 N -0.725 5.725 15 C 0.508 3.492 16 O -0.542 6.542 17 C -0.138 4.138 18 C -0.098 4.098 19 C 0.073 3.927 20 H 0.070 0.930 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.044 3.956 24 O -0.371 6.371 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.399 0.601 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.386 -27.400 -5.794 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.130 4.130 12 C -0.218 4.218 13 C 0.017 3.983 14 N -0.377 5.377 15 C 0.294 3.706 16 O -0.419 6.419 17 C -0.178 4.178 18 C -0.136 4.136 19 C 0.016 3.984 20 H 0.088 0.912 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.290 6.290 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.613 -26.599 -6.358 30.117 hybrid contribution 0.013 0.506 0.378 0.632 sum 12.626 -26.093 -5.980 29.598 Atomic orbital electron populations 1.69657 1.05127 1.25822 1.57573 1.24766 0.95577 0.97764 1.02890 0.86225 0.78499 0.83312 0.77916 1.21160 1.21653 1.21220 1.19205 0.91069 0.84002 1.42956 0.91116 1.42264 1.05897 0.99501 1.89529 1.20011 0.93000 0.84767 0.98733 1.23290 0.99102 0.94753 0.95820 1.22601 0.98851 1.02048 0.98321 1.20558 0.93987 0.84280 0.99457 1.46075 1.30731 1.15399 1.45479 1.20711 0.80201 0.90065 0.79616 1.90725 1.62933 1.48221 1.40001 1.21641 0.99157 0.95030 1.01965 1.21414 0.96804 0.94233 1.01111 1.23098 0.89312 0.89633 0.96405 0.91193 1.22988 0.98251 0.97718 1.00055 1.22939 0.98655 0.96244 1.01594 1.23382 0.90282 0.90171 0.99464 1.89162 1.31668 1.28429 1.79755 0.93433 0.78162 0.95456 0.94654 0.86915 0.87085 0.91188 0.89378 0.76758 0.89056 0.88395 0.90150 0.89664 0.90234 0.90428 0.90675 0.90629 0.89184 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.04 5.59 -61.09 -0.34 -19.38 16 10 C 0.16 3.35 6.35 -5.19 -0.03 3.32 16 11 C -0.11 -1.82 9.63 -36.02 -0.35 -2.16 16 12 C -0.20 -2.76 9.63 -36.03 -0.35 -3.11 16 13 C 0.14 2.05 5.76 -5.19 -0.03 2.02 16 14 N -0.73 -8.54 5.55 -61.48 -0.34 -8.88 16 15 C 0.51 6.56 7.83 -10.99 -0.09 6.47 16 16 O -0.54 -9.42 15.98 5.56 0.09 -9.33 16 17 C -0.14 -1.23 5.64 -27.89 -0.16 -1.39 16 18 C -0.10 -0.91 4.13 -26.73 -0.11 -1.02 16 19 C 0.07 0.56 3.25 -25.96 -0.08 0.48 16 20 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.15 -0.99 6.63 -25.17 -0.17 -1.16 16 22 C -0.16 -0.87 7.09 -25.17 -0.18 -1.05 16 23 C 0.04 0.28 7.63 37.93 0.29 0.57 16 24 O -0.37 -3.41 11.13 -35.23 -0.39 -3.80 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.38 10.51 7.66 -40.82 -0.31 10.19 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.75 5.29 -51.92 -0.27 0.48 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.50 5.29 -51.93 -0.27 1.23 16 33 H 0.40 3.43 8.46 -40.82 -0.35 3.08 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.80 8.01 -51.93 -0.42 0.39 16 36 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.39 16 38 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -34.28 355.55 -8.49 -42.78 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.07 Total: 8.06 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.50 Total: -4.65 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.04 Total: -56.27 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.30 Total: -13.13 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.28 -8.49 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.671 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds