Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48499 * 109.46960 * 269.99694 * 3 2 1 5 5 H 1.48496 * 109.47134 * 29.99708 * 3 2 1 6 6 H 1.48500 * 109.47181 * 149.99782 * 3 2 1 7 7 C 1.38816 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00675 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47553 * 180.02562 * 10 9 7 12 12 C 1.30995 * 119.99959 * 125.00424 * 11 10 9 13 13 C 1.50706 * 119.99788 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47174 * 124.99515 * 13 12 11 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 15 20 20 H 1.08992 * 110.33635 * 307.24624 * 19 18 17 21 21 C 1.54484 * 110.36892 * 184.99727 * 19 18 17 22 22 C 1.54507 * 104.06258 * 217.19097 * 21 19 18 23 23 C 1.54480 * 104.06532 * 0.02562 * 22 21 19 24 24 O 1.44429 * 104.80175 * 23.97716 * 23 22 21 25 25 H 0.97001 * 119.99921 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99642 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46795 * 59.99901 * 10 9 7 28 28 H 1.09002 * 109.47267 * 300.00462 * 10 9 7 29 29 H 1.08001 * 119.99541 * 304.99809 * 11 10 9 30 30 H 1.08001 * 120.00500 * 359.97438 * 12 11 10 31 31 H 1.08995 * 109.46956 * 4.99219 * 13 12 11 32 32 H 1.09001 * 109.46317 * 244.99666 * 13 12 11 33 33 H 0.97000 * 120.00580 * 0.02562 * 14 13 12 34 34 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 35 35 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 36 36 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 37 37 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 38 38 H 1.08996 * 110.51262 * 335.83661 * 21 19 18 39 39 H 1.09006 * 110.50852 * 98.41356 * 21 19 18 40 40 H 1.09004 * 110.51090 * 118.64475 * 22 21 19 41 41 H 1.08998 * 110.51579 * 241.21695 * 22 21 19 42 42 H 1.08996 * 110.37560 * 142.80839 * 23 22 21 43 43 H 1.08999 * 110.36874 * 265.14494 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0785 -4.8023 -0.0012 12 6 1.1478 -5.7228 -0.9306 13 6 0.1680 -6.8679 -0.9315 14 7 -0.5075 -6.9316 -2.2299 15 6 -1.4324 -7.8840 -2.4622 16 8 -1.7058 -8.6880 -1.5963 17 6 -2.1318 -7.9457 -3.7957 18 6 -3.1301 -9.1052 -3.7949 19 6 -3.8406 -9.1674 -5.1484 20 1 -4.2685 -8.1962 -5.3966 21 6 -4.9415 -10.2509 -5.1285 22 6 -4.8844 -10.8702 -6.5429 23 6 -3.7553 -10.0880 -7.2499 24 8 -2.9222 -9.5937 -6.1787 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 -0.0005 27 1 2.6844 -3.7147 0.8895 28 1 2.6845 -3.7147 -0.8905 29 1 0.3195 -4.8642 0.7647 30 1 1.9065 -5.6607 -1.6967 31 1 -0.5705 -6.7148 -0.1448 32 1 0.7008 -7.8019 -0.7529 33 1 -0.2886 -6.2888 -2.9226 34 1 -2.6623 -7.0097 -3.9715 35 1 -1.3962 -8.1001 -4.5851 36 1 -2.5997 -10.0411 -3.6191 37 1 -3.8657 -8.9507 -3.0055 38 1 -4.7220 -11.0046 -4.3724 39 1 -5.9172 -9.8006 -4.9456 40 1 -4.6366 -11.9301 -6.4861 41 1 -5.8329 -10.7280 -7.0607 42 1 -3.1841 -10.7507 -7.8999 43 1 -4.1696 -9.2581 -7.8223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754097359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = -72.675654 kcal Electronic energy + Delta-G solvation = -20795.590398 eV Core-core repulsion = 17454.771735 eV Total energy + Delta-G solvation = -3340.818662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.04037 -39.40308 -36.30777 -34.70546 -33.79912 -32.80142 -32.39309 -30.64485 -29.06467 -27.07998 -24.81942 -23.71712 -22.16571 -21.75504 -21.23129 -20.47990 -19.35154 -17.23975 -17.06428 -16.78457 -16.16039 -16.03125 -15.71747 -15.37836 -14.76809 -14.18567 -14.11248 -13.96030 -13.45520 -13.36004 -13.20528 -13.13752 -12.63824 -12.17596 -12.01099 -11.98966 -11.83976 -11.74654 -11.28763 -11.12673 -11.03864 -10.99009 -10.83860 -10.62343 -10.10179 -10.09627 -9.93851 -9.80986 -9.22341 -8.98110 -8.70676 -6.96168 -5.79333 -3.08873 2.29288 2.64297 3.37989 3.42199 3.47234 3.49153 3.54098 4.21980 4.32383 4.54070 4.58228 4.65458 4.66144 4.83115 4.96827 4.97560 5.11244 5.23205 5.27256 5.30051 5.32363 5.43371 5.49022 5.53824 5.57885 5.63833 5.67397 5.80063 5.82443 5.99463 6.00784 6.12999 6.38492 6.47512 6.51794 6.57045 6.90841 7.14864 7.51283 7.66971 8.21486 8.39056 9.50294 10.06702 10.42021 11.43418 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.002151 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.684450 B =13011.288831 C =13670.820548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.201 4.201 13 C 0.155 3.845 14 N -0.725 5.725 15 C 0.511 3.489 16 O -0.549 6.549 17 C -0.140 4.140 18 C -0.096 4.096 19 C 0.072 3.928 20 H 0.071 0.929 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.371 6.371 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -21.703 -13.107 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.127 4.127 12 C -0.220 4.220 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.298 3.702 16 O -0.427 6.427 17 C -0.180 4.180 18 C -0.134 4.134 19 C 0.015 3.985 20 H 0.089 0.911 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.290 6.290 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.550 -22.144 -12.446 26.803 hybrid contribution 0.029 1.312 -0.378 1.366 sum -8.521 -20.833 -12.825 25.905 Atomic orbital electron populations 1.69667 1.05145 1.25740 1.57561 1.24774 0.95576 0.97789 1.02893 0.86149 0.78634 0.83626 0.77537 1.21663 1.21721 1.20707 1.19252 0.91086 0.84021 1.42954 0.91058 1.42298 1.05947 0.99568 1.89584 1.19827 0.92624 0.84580 0.98437 1.23328 0.98292 0.94024 0.97043 1.22704 1.00968 0.97042 1.01332 1.20303 0.93868 0.97521 0.85138 1.46104 1.41289 1.33247 1.17020 1.20732 0.79349 0.80385 0.89744 1.90688 1.64374 1.40578 1.47023 1.21660 0.99894 1.01038 0.95410 1.21399 0.98292 0.99078 0.94623 1.23105 0.89385 0.97155 0.88886 0.91086 1.22987 0.99525 0.98848 0.97612 1.22939 0.99572 1.00900 0.96008 1.23385 0.92011 0.97219 0.90700 1.89162 1.29864 1.82313 1.27659 0.93451 0.78146 0.95137 0.95669 0.87294 0.86769 0.91305 0.91215 0.76172 0.88806 0.88262 0.90244 0.89759 0.90316 0.90420 0.90714 0.90611 0.89180 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.68 5.59 -61.09 -0.34 -19.02 16 10 C 0.17 3.47 6.70 -5.20 -0.03 3.44 16 11 C -0.11 -1.76 9.24 -36.03 -0.33 -2.10 16 12 C -0.20 -2.78 9.24 -36.02 -0.33 -3.11 16 13 C 0.15 2.01 6.11 -5.19 -0.03 1.98 16 14 N -0.73 -8.61 5.55 -61.47 -0.34 -8.95 16 15 C 0.51 6.45 7.83 -10.98 -0.09 6.37 16 16 O -0.55 -8.88 15.98 5.55 0.09 -8.80 16 17 C -0.14 -1.31 5.64 -27.88 -0.16 -1.46 16 18 C -0.10 -0.89 4.13 -26.73 -0.11 -1.00 16 19 C 0.07 0.58 3.25 -25.95 -0.08 0.49 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 C -0.15 -1.00 6.63 -25.16 -0.17 -1.16 16 22 C -0.16 -0.89 7.09 -25.16 -0.18 -1.07 16 23 C 0.04 0.29 7.63 37.93 0.29 0.58 16 24 O -0.37 -3.53 11.13 -35.23 -0.39 -3.92 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.38 10.36 7.66 -40.82 -0.31 10.05 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 29 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 30 H 0.11 1.49 7.84 -52.49 -0.41 1.08 16 31 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.40 4.04 8.46 -40.82 -0.35 3.70 16 34 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.10 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -33.33 360.04 -8.64 -41.97 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.31 Total: 8.05 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.47 Total: -4.53 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.04 Total: -55.56 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.30 Total: -12.72 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.33 -8.64 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.707 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds