Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00255 * 2 1 4 4 H 1.48497 * 109.46906 * 240.00352 * 3 2 1 5 5 H 1.48504 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47216 * 119.99955 * 3 2 1 7 7 C 1.38815 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99956 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99676 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47031 * 179.97438 * 10 9 7 12 12 C 1.31005 * 119.99841 * 127.00502 * 11 10 9 13 13 C 1.50703 * 119.99863 * 7.56157 * 12 11 10 14 14 N 1.46504 * 109.46886 * 127.15543 * 13 12 11 15 15 C 1.34777 * 119.99927 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99879 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47019 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46947 * 179.97438 * 18 17 15 20 20 H 1.08994 * 110.41769 * 52.69241 * 19 18 17 21 21 C 1.54479 * 110.36984 * 175.00289 * 19 18 17 22 22 C 1.54507 * 104.06283 * 142.81045 * 21 19 18 23 23 C 1.54486 * 104.18603 * 359.93162 * 22 21 19 24 24 O 1.44430 * 110.37275 * 290.38084 * 19 18 17 25 25 H 0.97006 * 119.99729 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00879 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47336 * 60.00442 * 10 9 7 28 28 H 1.08995 * 109.47580 * 299.99503 * 10 9 7 29 29 H 1.07998 * 120.00194 * 307.00602 * 11 10 9 30 30 H 1.07996 * 120.00010 * 187.56227 * 12 11 10 31 31 H 1.09002 * 109.47180 * 7.15825 * 13 12 11 32 32 H 1.08994 * 109.47268 * 247.15533 * 13 12 11 33 33 H 0.96994 * 120.00291 * 359.97438 * 14 13 12 34 34 H 1.09002 * 109.46906 * 60.00086 * 17 15 14 35 35 H 1.08994 * 109.47117 * 300.00054 * 17 15 14 36 36 H 1.09002 * 109.46903 * 60.00462 * 18 17 15 37 37 H 1.08994 * 109.47528 * 300.00179 * 18 17 15 38 38 H 1.09000 * 110.51251 * 24.16454 * 21 19 18 39 39 H 1.09003 * 110.51196 * 261.45395 * 21 19 18 40 40 H 1.08999 * 110.51211 * 118.64473 * 22 21 19 41 41 H 1.09000 * 110.51337 * 241.21876 * 22 21 19 42 42 H 1.08992 * 110.37226 * 94.91900 * 23 22 21 43 43 H 1.09003 * 110.37235 * 217.26134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0787 -4.8022 0.0012 12 6 1.1717 -5.7440 -0.9047 13 6 2.3534 -5.7763 -1.8395 14 7 2.9750 -7.1022 -1.7951 15 6 4.0569 -7.3650 -2.5547 16 8 4.5155 -6.5040 -3.2753 17 6 4.6967 -8.7286 -2.5086 18 6 5.8963 -8.7614 -3.4577 19 6 6.5462 -10.1457 -3.4105 20 1 5.8016 -10.9216 -3.5880 21 6 7.6825 -10.2421 -4.4525 22 6 8.7653 -11.0913 -3.7498 23 6 8.1585 -11.4078 -2.3648 24 8 7.1949 -10.3534 -2.1368 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6847 -3.7146 0.8905 28 1 2.6846 -3.7146 -0.8894 29 1 0.3002 -4.8467 0.7484 30 1 0.4016 -6.4973 -0.9816 31 1 3.0800 -5.0239 -1.5327 32 1 2.0190 -5.5656 -2.8552 33 1 2.6085 -7.7906 -1.2185 34 1 3.9704 -9.4812 -2.8154 35 1 5.0308 -8.9390 -1.4927 36 1 6.6227 -8.0088 -3.1512 37 1 5.5618 -8.5512 -4.4735 38 1 8.0687 -9.2507 -4.6893 39 1 7.3315 -10.7419 -5.3553 40 1 8.9495 -12.0109 -4.3053 41 1 9.6875 -10.5206 -3.6413 42 1 7.6619 -12.3779 -2.3809 43 1 8.9330 -11.3896 -1.5981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754097360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -63.307885 kcal Electronic energy + Delta-G solvation = -21055.664821 eV Core-core repulsion = 17715.252375 eV Total energy + Delta-G solvation = -3340.412446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02001 -39.38039 -36.57787 -34.48121 -33.78558 -32.78156 -32.39206 -30.45691 -29.05540 -26.60668 -25.07597 -23.98890 -22.45805 -22.03889 -21.24278 -20.32426 -18.65360 -17.23530 -16.82867 -16.68896 -16.19774 -16.10965 -15.73865 -15.42374 -14.79478 -14.37334 -14.09143 -13.83818 -13.42551 -13.27018 -13.20570 -13.08285 -12.58819 -12.31830 -12.17434 -11.98049 -11.78530 -11.69385 -11.27458 -11.13013 -10.99658 -10.93447 -10.76469 -10.41626 -10.11194 -10.03956 -9.87878 -9.74352 -9.11648 -8.98882 -8.56658 -6.89943 -5.74696 -3.03807 2.29279 2.69809 3.39878 3.47496 3.51105 3.52383 3.52919 4.21820 4.32285 4.52991 4.63520 4.64088 4.67208 4.81806 4.95590 5.03248 5.11464 5.24245 5.25659 5.31067 5.33418 5.43193 5.47408 5.58034 5.58302 5.67717 5.72412 5.80113 5.92592 5.99786 6.01610 6.28473 6.38900 6.50963 6.57209 6.62112 6.90206 7.17295 7.55535 7.72078 8.28026 8.43811 9.55041 10.11023 10.46582 11.48015 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.002296 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.819927 B =12194.360090 C =12764.202878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.140 3.860 14 N -0.725 5.725 15 C 0.508 3.492 16 O -0.542 6.542 17 C -0.138 4.138 18 C -0.098 4.098 19 C 0.073 3.927 20 H 0.069 0.931 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.044 3.956 24 O -0.371 6.371 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.921 -27.651 -6.364 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.219 4.219 13 C 0.017 3.983 14 N -0.377 5.377 15 C 0.294 3.706 16 O -0.419 6.419 17 C -0.178 4.178 18 C -0.136 4.136 19 C 0.016 3.984 20 H 0.087 0.913 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.290 6.290 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.338 -26.756 -6.694 30.214 hybrid contribution -0.172 0.406 0.150 0.466 sum 12.165 -26.350 -6.544 29.751 Atomic orbital electron populations 1.69661 1.05126 1.25807 1.57617 1.24765 0.95579 0.97762 1.02908 0.86225 0.78497 0.83304 0.77928 1.21158 1.21656 1.21217 1.19207 0.91078 0.84000 1.42906 0.91109 1.42262 1.05889 0.99501 1.89535 1.20015 0.92998 0.84756 0.98768 1.23294 0.99076 0.94777 0.95769 1.22597 0.98849 1.02055 0.98357 1.20555 0.94033 0.84246 0.99432 1.46077 1.30822 1.15300 1.45489 1.20714 0.80085 0.90167 0.79630 1.90726 1.62687 1.48302 1.40164 1.21640 0.98391 0.94690 1.03066 1.21413 0.96594 0.95236 1.00318 1.23086 0.94414 0.97579 0.83334 0.91281 1.22992 0.95732 1.01466 0.98799 1.22941 0.99457 1.00549 0.96502 1.23423 0.91816 0.91129 0.96920 1.89193 1.53576 1.55642 1.30608 0.93444 0.78169 0.95431 0.94633 0.86913 0.87105 0.89383 0.91198 0.76762 0.89158 0.88295 0.90060 0.89750 0.90201 0.90481 0.90671 0.90640 0.92362 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.11 5.59 -61.08 -0.34 -19.45 16 10 C 0.16 3.37 6.35 -5.19 -0.03 3.34 16 11 C -0.11 -1.82 9.63 -36.02 -0.35 -2.16 16 12 C -0.20 -2.77 9.63 -36.03 -0.35 -3.12 16 13 C 0.14 2.05 5.76 -5.19 -0.03 2.02 16 14 N -0.73 -8.54 5.55 -61.47 -0.34 -8.88 16 15 C 0.51 6.56 7.83 -10.99 -0.09 6.47 16 16 O -0.54 -9.42 15.98 5.55 0.09 -9.33 16 17 C -0.14 -1.23 5.64 -27.88 -0.16 -1.39 16 18 C -0.10 -0.91 4.13 -26.73 -0.11 -1.02 16 19 C 0.07 0.57 3.25 -25.95 -0.08 0.48 16 20 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 21 C -0.15 -0.99 6.63 -25.16 -0.17 -1.16 16 22 C -0.16 -0.89 7.08 -25.16 -0.18 -1.07 16 23 C 0.04 0.29 7.65 37.94 0.29 0.58 16 24 O -0.37 -3.50 11.13 -35.23 -0.39 -3.89 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.38 10.53 7.66 -40.82 -0.31 10.21 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.76 5.30 -51.93 -0.27 0.49 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.09 1.52 5.30 -51.93 -0.28 1.24 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.40 3.43 8.46 -40.82 -0.35 3.08 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 37 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.08 0.56 7.87 -51.93 -0.41 0.16 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -34.41 355.58 -8.49 -42.91 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.07 Total: 8.08 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.50 Total: -4.66 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.04 Total: -56.40 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.30 Total: -13.22 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.41 -8.49 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds