Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47017 * 270.00130 * 3 2 1 5 5 H 1.48506 * 109.46740 * 30.00190 * 3 2 1 6 6 H 1.48504 * 109.46864 * 150.00047 * 3 2 1 7 7 C 1.38812 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00318 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00148 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99538 * 125.00068 * 11 10 9 13 13 C 1.50707 * 119.99538 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46711 * 125.00141 * 13 12 11 15 15 C 1.34777 * 119.99661 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99838 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47068 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47153 * 179.97438 * 18 17 15 20 20 H 1.09003 * 110.41647 * 52.69658 * 19 18 17 21 21 C 1.54478 * 110.37213 * 175.00031 * 19 18 17 22 22 C 1.54510 * 104.06500 * 142.81344 * 21 19 18 23 23 C 1.54477 * 104.18108 * 359.93120 * 22 21 19 24 24 O 1.44415 * 110.37805 * 290.38354 * 19 18 17 25 25 H 0.97004 * 119.99815 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99745 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47115 * 60.00511 * 10 9 7 28 28 H 1.08999 * 109.47268 * 299.99899 * 10 9 7 29 29 H 1.07997 * 120.00145 * 305.00321 * 11 10 9 30 30 H 1.07997 * 120.00317 * 0.02562 * 12 11 10 31 31 H 1.08995 * 109.46961 * 4.99839 * 13 12 11 32 32 H 1.08999 * 109.46879 * 244.99660 * 13 12 11 33 33 H 0.96998 * 120.00678 * 359.97438 * 14 13 12 34 34 H 1.08995 * 109.47077 * 60.01048 * 17 15 14 35 35 H 1.08996 * 109.47657 * 300.00049 * 17 15 14 36 36 H 1.09002 * 109.46937 * 60.00144 * 18 17 15 37 37 H 1.08994 * 109.47306 * 300.00636 * 18 17 15 38 38 H 1.09000 * 110.51268 * 24.16771 * 21 19 18 39 39 H 1.08999 * 110.51553 * 261.45690 * 21 19 18 40 40 H 1.09002 * 110.51305 * 118.64650 * 22 21 19 41 41 H 1.08994 * 110.51141 * 241.21979 * 22 21 19 42 42 H 1.09006 * 110.37498 * 94.92285 * 23 22 21 43 43 H 1.09000 * 110.37254 * 217.25804 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0022 11 6 5.5937 -2.1957 -0.0020 12 6 6.3564 -2.7167 0.9270 13 6 7.8382 -2.4418 0.9269 14 7 8.2324 -1.8891 2.2251 15 6 9.5200 -1.5652 2.4567 16 8 10.3523 -1.7309 1.5902 17 6 9.9253 -0.9962 3.7920 18 6 11.4297 -0.7172 3.7920 19 6 11.8412 -0.1389 5.1473 20 1 11.4959 -0.7829 5.9562 21 6 13.3748 0.0340 5.2151 22 6 13.5701 1.3463 6.0069 23 6 12.1326 1.8146 6.3239 24 8 11.3121 1.1954 5.3063 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 -0.0007 27 1 3.8483 -3.0419 -0.8925 28 1 3.8490 -3.0432 0.8875 29 1 6.0266 -1.5689 -0.7675 30 1 5.9236 -3.3438 1.6923 31 1 8.0748 -1.7256 0.1401 32 1 8.3800 -3.3705 0.7478 33 1 7.5667 -1.7562 2.9180 34 1 9.6883 -1.7120 4.5790 35 1 9.3840 -0.0672 3.9706 36 1 11.6665 -0.0012 3.0049 37 1 11.9715 -1.6459 3.6132 38 1 13.7933 0.1267 4.2129 39 1 13.8305 -0.8028 5.7444 40 1 14.1224 1.1582 6.9276 41 1 14.0873 2.0870 5.3970 42 1 11.8314 1.4717 7.3138 43 1 12.0647 2.9006 6.2607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754097361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = -68.250672 kcal Electronic energy + Delta-G solvation = -20913.759536 eV Core-core repulsion = 17573.132756 eV Total energy + Delta-G solvation = -3340.626781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09566 -39.46003 -36.45917 -34.86357 -33.86037 -32.84616 -32.42745 -30.98662 -29.19367 -27.37073 -24.92247 -23.67835 -22.10636 -21.59595 -21.27643 -20.58299 -19.53915 -17.61614 -17.26920 -16.82399 -16.21923 -16.09169 -15.76723 -15.46643 -14.61936 -14.40841 -14.17590 -14.10676 -13.64496 -13.46954 -13.19981 -13.02541 -12.66531 -12.21821 -12.20649 -12.09328 -12.03025 -11.80030 -11.35939 -11.34253 -11.18431 -11.03612 -10.88691 -10.68713 -10.18428 -10.13655 -10.02183 -9.62747 -9.34497 -9.05190 -8.78668 -7.26712 -5.79289 -3.15607 2.15858 2.55467 3.28139 3.37104 3.40447 3.44910 3.49523 4.17718 4.27480 4.49884 4.57542 4.58003 4.61041 4.77533 4.83682 4.91406 5.05078 5.14659 5.18275 5.22463 5.29370 5.39146 5.42128 5.49597 5.52691 5.54838 5.62578 5.64085 5.73601 5.75775 5.88637 5.93578 6.27702 6.36044 6.47522 6.48224 6.78474 7.01075 7.41490 7.96047 8.12415 8.39454 9.17946 9.90160 10.09853 11.38820 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002508 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.960325 B =11160.313347 C =12283.700715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.177 3.823 11 C -0.116 4.116 12 C -0.196 4.196 13 C 0.153 3.847 14 N -0.726 5.726 15 C 0.511 3.489 16 O -0.548 6.548 17 C -0.140 4.140 18 C -0.096 4.096 19 C 0.073 3.927 20 H 0.070 0.930 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.044 3.956 24 O -0.371 6.371 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.135 -1.506 13.451 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.051 3.949 11 C -0.136 4.136 12 C -0.215 4.215 13 C 0.030 3.970 14 N -0.378 5.378 15 C 0.298 3.702 16 O -0.425 6.425 17 C -0.180 4.180 18 C -0.134 4.134 19 C 0.015 3.985 20 H 0.088 0.912 21 C -0.189 4.189 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.290 6.290 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 28.301 -1.625 12.694 31.060 hybrid contribution 0.298 1.202 0.473 1.326 sum 28.599 -0.423 13.167 31.488 Atomic orbital electron populations 1.69705 1.05096 1.25910 1.57348 1.24684 0.95274 0.97298 1.01881 0.86525 0.79211 0.84811 0.77854 1.21006 1.21640 1.20289 1.19063 0.80455 0.94836 1.43342 0.89133 1.42648 1.03958 1.02003 1.91257 1.19789 0.86121 0.89753 0.99246 1.23363 0.96669 0.96352 0.97191 1.22753 0.93876 1.03721 1.01166 1.20320 0.92774 0.98696 0.85184 1.46106 1.09351 1.65319 1.17012 1.20746 0.82068 0.77513 0.89879 1.90693 1.50722 1.54104 1.47017 1.21660 0.98365 1.02975 0.94997 1.21400 0.94333 1.01928 0.95755 1.23084 0.92371 0.85228 0.97812 0.91211 1.22988 0.96394 0.97861 1.01698 1.22941 0.97950 0.97715 1.00835 1.23431 0.89125 0.98913 0.91839 1.89196 1.55260 1.26125 1.58418 0.92992 0.80509 0.94277 0.94877 0.87315 0.86526 0.91320 0.91031 0.76176 0.88941 0.88116 0.90171 0.89807 0.90286 0.90469 0.90627 0.90661 0.92279 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.26 27.73 -169.99 -4.71 17.54 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -18.05 5.40 -61.09 -0.33 -18.38 16 10 C 0.18 3.39 6.70 -5.19 -0.03 3.35 16 11 C -0.12 -1.77 9.24 -36.02 -0.33 -2.10 16 12 C -0.20 -2.50 9.24 -36.02 -0.33 -2.83 16 13 C 0.15 1.85 6.11 -5.19 -0.03 1.82 16 14 N -0.73 -8.00 5.55 -61.47 -0.34 -8.35 16 15 C 0.51 6.08 7.83 -10.99 -0.09 6.00 16 16 O -0.55 -8.49 15.98 5.55 0.09 -8.40 16 17 C -0.14 -1.22 5.64 -27.88 -0.16 -1.38 16 18 C -0.10 -0.84 4.13 -26.73 -0.11 -0.95 16 19 C 0.07 0.55 3.25 -25.96 -0.08 0.47 16 20 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 21 C -0.15 -0.93 6.63 -25.16 -0.17 -1.10 16 22 C -0.16 -0.87 7.08 -25.16 -0.18 -1.04 16 23 C 0.04 0.29 7.65 37.93 0.29 0.58 16 24 O -0.37 -3.55 11.13 -35.23 -0.39 -3.94 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.36 8.50 5.52 -40.82 -0.23 8.27 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.63 7.79 -51.93 -0.40 0.23 16 29 H 0.11 1.59 7.84 -52.49 -0.41 1.18 16 30 H 0.12 1.40 7.84 -52.49 -0.41 0.98 16 31 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.67 8.46 -40.82 -0.35 3.33 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.89 8.01 -51.93 -0.42 0.47 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -34.33 356.94 -8.28 -42.60 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.26 Total: 6.53 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.48 Total: -4.36 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.10 Total: -55.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.30 Total: -12.34 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.33 -8.28 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754097361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.646 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds