Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47497 * 64.99574 * 11 10 9 13 13 N 1.46501 * 109.46987 * 304.99639 * 11 10 9 14 14 C 1.34768 * 119.99929 * 155.00340 * 13 11 10 15 15 O 1.21278 * 120.00284 * 0.02562 * 14 13 11 16 16 C 1.50708 * 120.00048 * 179.97438 * 14 13 11 17 17 H 1.09001 * 109.52125 * 300.13262 * 16 14 13 18 18 C 1.53170 * 109.52334 * 179.97438 * 16 14 13 19 19 C 1.53178 * 109.03821 * 183.11478 * 18 16 14 20 20 C 1.53094 * 109.16245 * 56.98038 * 19 18 16 21 21 O 1.42908 * 109.41581 * 302.39566 * 20 19 18 22 22 C 1.42900 * 114.09823 * 61.15653 * 21 20 19 23 23 C 1.53001 * 109.46872 * 185.00350 * 11 10 9 24 24 C 1.53001 * 117.49300 * 248.61977 * 23 11 10 25 25 C 1.53001 * 60.00030 * 252.50824 * 24 23 11 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 0.97009 * 120.00100 * 335.00750 * 13 11 10 31 31 H 1.09003 * 109.54933 * 302.98150 * 18 16 14 32 32 H 1.09003 * 109.54711 * 63.15946 * 18 16 14 33 33 H 1.08999 * 109.52338 * 176.88828 * 19 18 16 34 34 H 1.09005 * 109.52291 * 297.01636 * 19 18 16 35 35 H 1.09000 * 109.48106 * 62.37828 * 20 19 18 36 36 H 1.08997 * 109.48280 * 182.41071 * 20 19 18 37 37 H 1.09003 * 109.47878 * 178.86231 * 22 21 20 38 38 H 1.08998 * 109.48008 * 58.82339 * 22 21 20 39 39 H 1.09003 * 115.55316 * 34.32266 * 23 11 10 40 40 H 1.08992 * 117.50425 * 359.97438 * 24 23 11 41 41 H 1.09002 * 117.49911 * 145.01913 * 24 23 11 42 42 H 1.09002 * 117.49986 * 252.51406 * 25 24 23 43 43 H 1.08995 * 117.49781 * 107.48852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.4977 -4.8085 -0.9516 13 7 0.1438 -4.6822 1.1118 14 6 -1.0806 -5.2426 1.0570 15 8 -1.4208 -5.8612 0.0709 16 6 -2.0267 -5.1017 2.2216 17 1 -1.5753 -5.5386 3.1124 18 6 -3.3395 -5.8245 1.9051 19 6 -4.3201 -5.6088 3.0618 20 6 -4.5212 -4.1064 3.2766 21 8 -3.2581 -3.4903 3.5359 22 6 -2.3163 -3.6188 2.4688 23 6 1.8244 -6.1418 0.0987 24 6 1.8318 -7.0646 -1.1217 25 6 1.0016 -7.4317 0.1099 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.4160 -4.1876 1.9007 31 1 -3.7653 -5.4215 0.9861 32 1 -3.1483 -6.8905 1.7814 33 1 -5.2761 -6.0734 2.8204 34 1 -3.9164 -6.0567 3.9700 35 1 -4.9631 -3.6673 2.3822 36 1 -5.1849 -3.9463 4.1263 37 1 -1.3916 -3.1075 2.7366 38 1 -2.7293 -3.1734 1.5638 39 1 2.7238 -6.1131 0.7138 40 1 1.2944 -6.7301 -2.0090 41 1 2.7362 -7.6432 -1.3097 42 1 1.3599 -8.2518 0.7323 43 1 -0.0816 -7.3384 0.0328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -58.095267 kcal Electronic energy + Delta-G solvation = -23237.875082 eV Core-core repulsion = 19897.688672 eV Total energy + Delta-G solvation = -3340.186409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29846 -38.76207 -37.09193 -35.02882 -33.52108 -33.44342 -31.62881 -30.75132 -27.99346 -25.01294 -24.41350 -23.86603 -22.16301 -21.54937 -21.14818 -20.04998 -19.72807 -17.45165 -16.83368 -16.34733 -16.20394 -15.59188 -15.19089 -15.01063 -14.70419 -14.31410 -14.13630 -13.61066 -13.40704 -13.14216 -12.91085 -12.82935 -12.53703 -12.07956 -11.74363 -11.56809 -11.23764 -11.14055 -11.08952 -10.92021 -10.85741 -10.81646 -10.37862 -10.19720 -10.12226 -9.94831 -9.71383 -9.60403 -9.33163 -8.93190 -8.62822 -6.98529 -5.80271 -3.09959 2.86178 3.35956 3.42104 3.47284 3.48796 3.90276 4.14951 4.54134 4.64121 4.80131 4.83294 4.87990 4.94088 5.12755 5.16925 5.24149 5.29738 5.38639 5.47459 5.53672 5.63964 5.74100 5.77623 5.80084 5.82590 5.84379 5.89887 5.95389 6.07239 6.11995 6.21414 6.25857 6.35711 6.48308 6.51026 6.66895 6.93522 7.19064 7.66618 7.85530 8.37488 8.52448 9.49643 10.04472 10.40258 11.41982 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.006063 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.170070 B = 4617.271154 C = 6705.517845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.087 0.913 13 N -0.706 5.706 14 C 0.524 3.476 15 O -0.544 6.544 16 C -0.142 4.142 17 H 0.101 0.899 18 C -0.101 4.101 19 C -0.155 4.155 20 C 0.056 3.944 21 O -0.377 6.377 22 C 0.072 3.928 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.186 4.186 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.035 0.965 29 H 0.025 0.975 30 H 0.404 0.596 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -13.773 5.888 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.105 0.895 13 N -0.355 5.355 14 C 0.310 3.690 15 O -0.423 6.423 16 C -0.164 4.164 17 H 0.119 0.881 18 C -0.139 4.139 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.295 6.295 22 C -0.005 4.005 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.222 4.222 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.239 0.761 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.750 -13.967 5.356 15.695 hybrid contribution 0.398 0.998 0.092 1.078 sum -4.352 -12.970 5.448 14.725 Atomic orbital electron populations 1.69654 1.05073 1.25723 1.57364 1.24737 0.95515 0.97671 1.02767 0.86195 0.78648 0.83822 0.77514 1.21746 1.21763 1.20765 1.19201 0.91028 0.84017 1.43185 0.91155 1.42331 1.05941 0.99707 1.89622 1.20920 0.93035 0.85104 0.98966 1.20804 0.90183 0.92723 0.89977 0.89479 1.46014 1.14527 1.54462 1.20538 1.20292 0.82086 0.78431 0.88191 1.90595 1.76288 1.41934 1.33471 1.22006 0.96584 0.99654 0.98141 0.88073 1.21383 0.93167 1.00948 0.98355 1.22220 1.00161 0.97524 0.99362 1.22614 0.86056 0.91914 1.01542 1.87968 1.23521 1.76619 1.41377 1.22567 0.94022 0.92584 0.91370 1.22655 1.01459 0.91522 1.02596 1.22881 1.02017 1.03219 0.92764 1.23250 1.00683 0.97435 1.00875 0.93469 0.78063 0.94741 0.95724 0.76096 0.90865 0.90974 0.90727 0.91130 0.92987 0.88999 0.87645 0.91921 0.87909 0.88775 0.89245 0.89964 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.68 5.43 -59.90 -0.33 -18.01 16 10 C 0.15 2.84 5.80 -4.04 -0.02 2.82 16 11 C 0.17 2.79 2.43 -67.93 -0.17 2.63 16 12 H 0.09 1.66 7.33 -51.93 -0.38 1.28 16 13 N -0.71 -10.96 4.40 -53.80 -0.24 -11.20 16 14 C 0.52 8.17 6.49 -10.99 -0.07 8.09 16 15 O -0.54 -9.84 12.99 5.56 0.07 -9.77 16 16 C -0.14 -1.86 2.73 -91.63 -0.25 -2.11 16 17 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 18 C -0.10 -1.21 4.62 -26.55 -0.12 -1.33 16 19 C -0.15 -1.53 6.14 -26.59 -0.16 -1.70 16 20 C 0.06 0.62 6.84 37.21 0.25 0.87 16 21 O -0.38 -5.37 10.77 -35.23 -0.38 -5.75 16 22 C 0.07 1.04 6.01 37.21 0.22 1.26 16 23 C -0.16 -2.30 5.36 -90.62 -0.49 -2.79 16 24 C -0.17 -2.26 10.18 -26.73 -0.27 -2.54 16 25 C -0.19 -2.54 9.73 -26.73 -0.26 -2.80 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.39 9.89 7.33 -40.82 -0.30 9.59 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.40 6.01 8.09 -40.82 -0.33 5.68 16 31 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.58 7.66 -51.93 -0.40 1.18 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.85 5.02 -51.93 -0.26 1.59 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -30.51 344.66 -8.68 -39.19 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -7.12 Total: 14.71 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.58 Total: -4.73 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.16 Total: -55.87 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.31 Total: -15.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.51 -8.68 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.908 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds