Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 120.00007 * 2 1 4 4 H 1.48498 * 109.46959 * 239.99575 * 3 2 1 5 5 H 1.48504 * 109.46721 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47220 * 119.99368 * 3 2 1 7 7 C 1.38814 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99528 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46895 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.46864 * 295.00140 * 11 10 9 13 13 N 1.46501 * 109.47190 * 54.99442 * 11 10 9 14 14 C 1.34781 * 120.00045 * 204.99826 * 13 11 10 15 15 O 1.21285 * 119.99824 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99755 * 180.02562 * 14 13 11 17 17 H 1.08995 * 109.57408 * 59.84814 * 16 14 13 18 18 C 1.53176 * 109.51905 * 180.02562 * 16 14 13 19 19 C 1.53175 * 109.03666 * 176.88407 * 18 16 14 20 20 C 1.53094 * 109.16661 * 303.02385 * 19 18 16 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.52998 * 109.47361 * 174.99816 * 11 10 9 24 24 C 1.53000 * 117.49993 * 248.62214 * 23 11 10 25 25 C 1.52995 * 117.49991 * 179.97438 * 23 11 10 26 26 H 0.97000 * 120.00590 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00335 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47508 * 59.99673 * 10 9 7 29 29 H 1.09001 * 109.47078 * 299.99414 * 10 9 7 30 30 H 0.97002 * 119.99759 * 25.00285 * 13 11 10 31 31 H 1.08997 * 109.55040 * 296.75518 * 18 16 14 32 32 H 1.09004 * 109.54565 * 57.02166 * 18 16 14 33 33 H 1.09004 * 109.52259 * 62.92651 * 19 18 16 34 34 H 1.09006 * 109.52330 * 183.11484 * 19 18 16 35 35 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 36 36 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 37 37 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 38 38 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 39 39 H 1.09005 * 115.54690 * 34.33237 * 23 11 10 40 40 H 1.08995 * 117.49805 * 359.97438 * 24 23 11 41 41 H 1.08994 * 117.49922 * 145.01955 * 24 23 11 42 42 H 1.08999 * 117.50081 * 214.97828 * 25 23 11 43 43 H 1.08999 * 117.50109 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4973 -4.8138 0.9311 13 7 0.1448 -4.6758 -1.1318 14 6 -1.0797 -5.2367 -1.0810 15 8 -1.4208 -5.8603 -0.0982 16 6 -2.0249 -5.0891 -2.2454 17 1 -1.5737 -5.5203 -3.1389 18 6 -3.3379 -5.8139 -1.9338 19 6 -4.3179 -5.5916 -3.0898 20 6 -4.5189 -4.0880 -3.2962 21 8 -3.2557 -3.4705 -3.5511 22 6 -2.3146 -3.6050 -2.4843 23 6 1.8248 -6.1411 -0.1259 24 6 1.6649 -6.9271 -1.4287 25 6 1.0022 -7.4310 -0.1445 26 1 -0.4851 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6849 -3.7145 0.8904 29 1 2.6847 -3.7145 -0.8895 30 1 0.4175 -4.1768 -1.9177 31 1 -3.1470 -6.8807 -1.8176 32 1 -3.7643 -5.4162 -1.0128 33 1 -3.9131 -6.0333 -4.0005 34 1 -5.2740 -6.0577 -2.8516 35 1 -4.9614 -3.6540 -2.3995 36 1 -5.1821 -3.9232 -4.1453 37 1 -2.7282 -3.1647 -1.5769 38 1 -1.3898 -3.0920 -2.7482 39 1 2.7977 -6.1719 0.3648 40 1 1.0174 -6.5031 -2.1961 41 1 2.5327 -7.4752 -1.7956 42 1 1.4342 -8.3104 0.3331 43 1 -0.0811 -7.3382 -0.0676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = -53.712992 kcal Electronic energy + Delta-G solvation = -23392.571207 eV Core-core repulsion = 20052.574827 eV Total energy + Delta-G solvation = -3339.996380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42538 -38.85224 -37.04867 -34.91748 -33.54142 -33.34446 -31.65997 -30.75793 -28.11106 -25.02236 -24.42412 -23.92960 -22.25034 -21.53689 -21.23271 -19.86674 -19.61165 -17.47422 -16.91639 -16.34507 -16.12375 -15.72497 -15.51862 -14.86820 -14.73652 -14.31620 -13.92862 -13.61758 -13.35107 -13.20612 -13.00062 -12.78457 -12.55563 -12.04346 -11.71522 -11.58739 -11.39791 -11.20974 -11.13619 -10.91693 -10.89325 -10.81386 -10.39220 -10.25502 -10.11951 -9.81037 -9.64478 -9.57759 -9.36434 -8.92768 -8.65355 -6.98363 -5.79946 -3.09675 2.82664 3.39505 3.42812 3.47216 3.48067 3.90747 4.05725 4.54534 4.62059 4.77955 4.82671 4.87378 4.94691 5.11428 5.18166 5.19640 5.24618 5.37336 5.52641 5.56408 5.62791 5.71964 5.76529 5.78972 5.81513 5.83697 5.93591 6.00353 6.01987 6.10416 6.21543 6.24604 6.30923 6.47565 6.50737 6.68152 6.92296 7.17978 7.66328 7.81951 8.37831 8.49223 9.49892 10.04801 10.40538 11.42244 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.005967 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.112589 B = 4691.512236 C = 6531.339915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.090 0.910 13 N -0.707 5.707 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.143 4.143 17 H 0.101 0.899 18 C -0.101 4.101 19 C -0.155 4.155 20 C 0.056 3.944 21 O -0.376 6.376 22 C 0.072 3.928 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.188 4.188 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.405 0.595 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -13.616 -6.559 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.108 0.892 13 N -0.358 5.358 14 C 0.308 3.692 15 O -0.419 6.419 16 C -0.164 4.164 17 H 0.119 0.881 18 C -0.139 4.139 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.295 6.295 22 C -0.005 4.005 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.851 -13.815 -6.014 15.829 hybrid contribution 0.411 0.996 -0.084 1.081 sum -4.440 -12.820 -6.098 14.874 Atomic orbital electron populations 1.69637 1.05072 1.25850 1.57292 1.24731 0.95508 0.97660 1.02749 0.86270 0.78526 0.83533 0.77828 1.21263 1.21701 1.21297 1.19154 0.90996 0.84033 1.43310 0.91215 1.42321 1.05929 0.99693 1.89636 1.20911 0.93060 0.85114 0.98954 1.20754 0.90229 0.92781 0.89974 0.89157 1.46043 1.14591 1.54307 1.20825 1.20321 0.82048 0.78587 0.88221 1.90609 1.76094 1.41574 1.33593 1.22009 0.96627 0.99695 0.98097 0.88125 1.21386 0.93145 1.00915 0.98412 1.22223 1.00173 0.97518 0.99359 1.22616 0.86045 0.91893 1.01582 1.87967 1.23539 1.76387 1.41568 1.22562 0.94056 0.92512 0.91409 1.22698 1.00768 0.92525 1.01974 1.22875 1.02937 1.04028 0.91612 1.23329 1.01555 0.96787 1.00753 0.93414 0.78062 0.94869 0.95597 0.75985 0.90963 0.90831 0.91128 0.90698 0.92977 0.88983 0.91896 0.87650 0.87315 0.89086 0.89540 0.89808 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.61 5.43 -59.91 -0.33 -17.93 16 10 C 0.15 2.82 5.80 -4.04 -0.02 2.79 16 11 C 0.17 2.77 2.59 -67.93 -0.18 2.59 16 12 H 0.09 1.71 7.58 -51.92 -0.39 1.32 16 13 N -0.71 -10.81 2.96 -53.80 -0.16 -10.97 16 14 C 0.52 8.04 5.99 -10.98 -0.07 7.97 16 15 O -0.54 -9.73 13.00 5.55 0.07 -9.66 16 16 C -0.14 -1.84 2.73 -91.64 -0.25 -2.09 16 17 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.10 -1.21 4.62 -26.55 -0.12 -1.33 16 19 C -0.15 -1.53 6.14 -26.59 -0.16 -1.69 16 20 C 0.06 0.61 6.84 37.21 0.25 0.87 16 21 O -0.38 -5.34 10.76 -35.23 -0.38 -5.72 16 22 C 0.07 1.03 6.01 37.20 0.22 1.26 16 23 C -0.16 -2.25 5.71 -90.62 -0.52 -2.77 16 24 C -0.18 -2.25 9.74 -26.71 -0.26 -2.51 16 25 C -0.19 -2.57 9.82 -26.71 -0.26 -2.84 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 9.85 7.33 -40.82 -0.30 9.55 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 5.97 8.09 -40.82 -0.33 5.64 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.57 7.66 -51.93 -0.40 1.17 16 39 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16 40 H 0.09 1.16 6.66 -51.93 -0.35 0.82 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -30.41 341.74 -8.61 -39.02 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.06 Total: 14.62 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.61 Total: -4.88 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.24 Total: -55.55 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.31 Total: -15.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.41 -8.61 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.691 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds