Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.46953 * 294.99692 * 11 10 9 13 13 N 1.46496 * 109.47264 * 54.99754 * 11 10 9 14 14 C 1.34782 * 120.00312 * 205.00459 * 13 11 10 15 15 O 1.21284 * 119.99735 * 359.97438 * 14 13 11 16 16 C 1.50695 * 120.00398 * 179.97438 * 14 13 11 17 17 H 1.09002 * 109.52355 * 300.12637 * 16 14 13 18 18 C 1.53180 * 109.52493 * 179.97438 * 16 14 13 19 19 C 1.53180 * 109.03578 * 183.11328 * 18 16 14 20 20 C 1.53086 * 109.16183 * 56.97982 * 19 18 16 21 21 O 1.42896 * 109.41787 * 302.38970 * 20 19 18 22 22 C 1.42905 * 114.09942 * 61.16326 * 21 20 19 23 23 C 1.53003 * 109.47495 * 175.00001 * 11 10 9 24 24 C 1.52998 * 117.49590 * 248.74452 * 23 11 10 25 25 C 1.52997 * 117.50032 * 180.08788 * 23 11 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 29 29 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 30 30 H 0.97002 * 120.00310 * 25.00036 * 13 11 10 31 31 H 1.08992 * 109.54206 * 302.98362 * 18 16 14 32 32 H 1.08997 * 109.53816 * 63.15981 * 18 16 14 33 33 H 1.08997 * 109.52176 * 176.88808 * 19 18 16 34 34 H 1.09002 * 109.52170 * 297.01482 * 19 18 16 35 35 H 1.08999 * 109.48210 * 62.37671 * 20 19 18 36 36 H 1.09005 * 109.47945 * 182.40260 * 20 19 18 37 37 H 1.08997 * 109.48125 * 178.85880 * 22 21 20 38 38 H 1.09001 * 109.48202 * 58.81880 * 22 21 20 39 39 H 1.09002 * 115.55009 * 34.41026 * 23 11 10 40 40 H 1.09005 * 117.50238 * 0.02562 * 24 23 11 41 41 H 1.09002 * 117.49603 * 145.01583 * 24 23 11 42 42 H 1.09002 * 117.49936 * 214.97748 * 25 23 11 43 43 H 1.08998 * 117.50084 * 359.97163 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8943 -1.6978 -0.9304 13 7 5.9518 -1.3230 1.1324 14 6 7.0497 -0.5429 1.0811 15 8 7.7603 -0.5600 0.0983 16 6 7.3944 0.3506 2.2446 17 1 6.5790 1.0527 2.4187 18 6 8.6791 1.1242 1.9329 19 6 9.0616 1.9693 3.1520 20 6 9.2154 1.0541 4.3695 21 8 7.9957 0.3416 4.5852 22 6 7.6125 -0.5021 3.4973 23 6 6.3805 -3.5108 0.1268 24 6 7.1393 -3.7662 1.4306 25 6 7.9088 -3.4430 0.1475 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3620 0.0007 28 1 3.8486 -3.0425 0.8909 29 1 3.8493 -3.0422 -0.8891 30 1 5.3836 -1.3095 1.9185 31 1 9.4823 0.4222 1.7093 32 1 8.5137 1.7747 1.0741 33 1 10.0047 2.4807 2.9592 34 1 8.2809 2.7052 3.3445 35 1 10.0240 0.3452 4.1916 36 1 9.4458 1.6552 5.2492 37 1 6.6881 -1.0221 3.7486 38 1 8.4002 -1.2314 3.3079 39 1 5.9213 -4.3686 -0.3646 40 1 7.0938 -2.9943 2.1989 41 1 7.1797 -4.7921 1.7966 42 1 8.4552 -4.2563 -0.3301 43 1 8.3700 -2.4583 0.0711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = -49.907887 kcal Electronic energy + Delta-G solvation = -23465.784350 eV Core-core repulsion = 20125.952972 eV Total energy + Delta-G solvation = -3339.831378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65321 -39.05485 -37.22479 -35.11225 -33.75629 -33.48743 -31.86516 -31.07062 -28.56455 -25.26700 -24.67477 -23.93031 -22.31376 -21.51795 -21.30659 -20.02144 -19.81317 -17.91271 -17.19647 -16.66552 -16.36327 -15.86150 -15.67282 -15.08488 -14.78056 -14.37048 -14.17373 -13.94677 -13.60816 -13.34523 -13.05544 -12.80450 -12.71760 -12.32639 -11.94433 -11.74610 -11.57992 -11.39992 -11.31081 -11.13125 -11.08297 -10.91423 -10.64376 -10.28528 -10.23116 -9.89878 -9.77017 -9.62603 -9.55335 -8.98164 -8.83569 -7.30918 -5.82051 -3.18514 2.63584 3.19821 3.32834 3.37244 3.41747 3.61774 3.95174 4.40980 4.54189 4.59498 4.60948 4.68569 4.73955 4.88535 5.02924 5.07881 5.09423 5.14383 5.33132 5.37015 5.44267 5.47149 5.52204 5.60189 5.62290 5.72327 5.73082 5.79106 5.86666 5.92508 6.02578 6.07993 6.17300 6.35345 6.40092 6.55476 6.76075 6.88168 7.62412 7.92967 8.29696 8.36643 9.14914 9.87083 10.06179 11.36107 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.005997 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.671373 B = 4668.101213 C = 5943.107612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.152 3.848 11 C 0.164 3.836 12 H 0.091 0.909 13 N -0.713 5.713 14 C 0.520 3.480 15 O -0.537 6.537 16 C -0.148 4.148 17 H 0.107 0.893 18 C -0.100 4.100 19 C -0.157 4.157 20 C 0.057 3.943 21 O -0.376 6.376 22 C 0.073 3.927 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.187 4.187 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.405 0.595 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.177 -1.827 7.466 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.059 3.941 12 H 0.109 0.891 13 N -0.364 5.364 14 C 0.306 3.694 15 O -0.414 6.414 16 C -0.170 4.170 17 H 0.125 0.875 18 C -0.138 4.138 19 C -0.195 4.195 20 C -0.019 4.019 21 O -0.294 6.294 22 C -0.004 4.004 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.224 4.224 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.313 -1.911 6.917 21.543 hybrid contribution 0.254 1.200 0.001 1.226 sum 20.567 -0.711 6.918 21.711 Atomic orbital electron populations 1.69697 1.05070 1.25878 1.57284 1.24650 0.95189 0.97106 1.01870 0.86606 0.79319 0.85169 0.77814 1.20977 1.20425 1.21616 1.19037 0.80461 0.94778 1.43357 0.89085 1.42692 1.04094 1.02058 1.91259 1.20892 0.86920 0.89855 0.99847 1.20832 0.95185 0.88241 0.89857 0.89076 1.46133 1.26656 1.42609 1.20972 1.20352 0.80789 0.79919 0.88356 1.90621 1.50518 1.66628 1.33674 1.22060 1.01304 0.98832 0.94790 0.87461 1.21383 0.95764 0.98797 0.97891 1.22233 1.02766 0.99011 0.95483 1.22634 0.86566 0.94373 0.98372 1.87978 1.41403 1.60368 1.39659 1.22532 1.01162 0.91454 0.85289 1.22665 0.93980 0.99153 1.02097 1.22911 1.05176 1.01855 0.91554 1.23331 0.94056 1.04215 1.00798 0.92986 0.80491 0.94651 0.93965 0.75930 0.90944 0.90628 0.90487 0.90812 0.93058 0.88734 0.88219 0.92451 0.87048 0.89117 0.89338 0.89668 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 9 N -0.75 -17.26 5.24 -59.91 -0.31 -17.58 16 10 C 0.15 2.77 5.80 -4.05 -0.02 2.74 16 11 C 0.16 2.52 2.59 -67.93 -0.18 2.34 16 12 H 0.09 1.60 7.58 -51.92 -0.39 1.21 16 13 N -0.71 -10.08 2.96 -53.81 -0.16 -10.24 16 14 C 0.52 7.40 5.99 -10.99 -0.07 7.33 16 15 O -0.54 -9.03 12.99 5.55 0.07 -8.96 16 16 C -0.15 -1.75 2.73 -91.63 -0.25 -2.00 16 17 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.10 -1.09 4.62 -26.55 -0.12 -1.22 16 19 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 20 C 0.06 0.50 6.84 37.20 0.25 0.75 16 21 O -0.38 -4.21 10.77 -35.23 -0.38 -4.59 16 22 C 0.07 0.76 5.82 37.21 0.22 0.98 16 23 C -0.16 -2.08 5.71 -90.62 -0.52 -2.60 16 24 C -0.18 -2.07 9.74 -26.70 -0.26 -2.33 16 25 C -0.19 -2.38 9.82 -26.70 -0.26 -2.64 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.36 8.28 5.20 -40.82 -0.21 8.07 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.41 5.40 8.09 -40.82 -0.33 5.07 16 31 H 0.07 0.80 8.03 -51.93 -0.42 0.39 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.96 7.66 -51.93 -0.40 0.56 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 1.36 8.11 -51.93 -0.42 0.93 16 40 H 0.09 1.03 6.48 -51.93 -0.34 0.69 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.12 1.69 5.01 -51.93 -0.26 1.43 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -32.08 338.26 -8.26 -40.33 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.01 Total: 11.84 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.62 Total: -5.02 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.30 Total: -56.02 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.31 Total: -13.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.08 -8.26 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.577 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds