Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48492 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46871 * 300.00295 * 3 2 1 6 6 H 1.48510 * 109.46818 * 59.99549 * 3 2 1 7 7 C 1.38813 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99764 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47574 * 134.49020 * 0.02562 * 9 7 2 11 11 C 1.53954 * 86.11612 * 204.63254 * 10 9 7 12 12 C 1.47581 * 134.49059 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87546 * 269.67745 * 12 9 7 14 14 C 1.52997 * 113.76805 * 41.06598 * 12 9 7 15 15 N 1.46506 * 109.46916 * 281.48994 * 14 12 9 16 16 C 1.34778 * 119.99635 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00243 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00069 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47349 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.46931 * 179.97438 * 19 18 16 21 21 H 1.08999 * 110.55193 * 307.88220 * 20 19 18 22 22 C 1.54991 * 110.61474 * 185.00044 * 20 19 18 23 23 C 1.54810 * 102.09350 * 204.47831 * 22 20 19 24 24 C 1.54106 * 104.18526 * 20.88072 * 23 22 20 25 25 O 1.43745 * 107.29161 * 2.03378 * 24 23 22 26 26 H 0.96998 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.77688 * 90.33531 * 10 9 7 28 28 H 1.08994 * 113.87175 * 318.94331 * 10 9 7 29 29 H 1.08991 * 113.74520 * 222.04465 * 11 10 9 30 30 H 1.08999 * 113.83362 * 90.74747 * 11 10 9 31 31 H 1.09005 * 109.47119 * 161.48926 * 14 12 9 32 32 H 1.09000 * 109.47471 * 41.49028 * 14 12 9 33 33 H 0.96995 * 120.00261 * 0.02562 * 15 14 12 34 34 H 1.09000 * 109.46652 * 59.99601 * 18 16 15 35 35 H 1.09000 * 109.46833 * 300.00232 * 18 16 15 36 36 H 1.09007 * 109.46823 * 60.00331 * 19 18 16 37 37 H 1.09000 * 109.47232 * 300.00495 * 19 18 16 38 38 H 1.09005 * 110.90880 * 86.28061 * 22 20 19 39 39 H 1.09001 * 110.94109 * 322.68597 * 22 20 19 40 40 H 1.09000 * 110.49118 * 262.21058 * 23 22 20 41 41 H 1.08996 * 110.60415 * 139.61242 * 23 22 20 42 42 H 1.09004 * 109.87542 * 121.45649 * 24 23 22 43 43 H 1.09000 * 109.87721 * 242.60820 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1032 -2.7574 -0.0004 11 6 0.3467 -4.0828 0.6407 12 6 1.7203 -3.8101 0.0005 13 1 1.8328 -4.2367 -0.9961 14 6 2.9024 -4.1220 0.9204 15 7 4.1497 -3.7187 0.2662 16 6 5.3287 -3.8997 0.8937 17 8 5.3570 -4.3958 2.0000 18 6 6.6118 -3.4844 0.2212 19 6 7.7940 -3.7963 1.1410 20 6 9.0966 -3.3752 0.4578 21 1 9.1610 -3.8055 -0.5416 22 6 10.3206 -3.7931 1.3119 23 6 11.3997 -2.7850 0.8473 24 6 10.5927 -1.6211 0.2399 25 8 9.1997 -1.9362 0.4030 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5264 -2.8734 -0.9982 28 1 -0.7188 -2.1398 0.6535 29 1 -0.1592 -4.9596 0.2368 30 1 0.3583 -4.0633 1.7305 31 1 2.9298 -5.1920 1.1268 32 1 2.7892 -3.5743 1.8559 33 1 4.1271 -3.3215 -0.6184 34 1 6.5843 -2.4143 0.0156 35 1 6.7250 -4.0314 -0.7148 36 1 7.8216 -4.8664 1.3469 37 1 7.6806 -3.2491 2.0768 38 1 10.6213 -4.8163 1.0864 39 1 10.1116 -3.6765 2.3754 40 1 12.0443 -3.2366 0.0933 41 1 11.9907 -2.4380 1.6949 42 1 10.8270 -0.6945 0.7639 43 1 10.8283 -1.5200 -0.8195 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754473409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -66.960607 kcal Electronic energy + Delta-G solvation = -22237.801224 eV Core-core repulsion = 18897.230384 eV Total energy + Delta-G solvation = -3340.570839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91556 -40.23886 -39.51884 -35.49691 -34.57192 -34.18754 -32.96334 -30.32877 -29.81944 -28.62663 -25.34994 -25.29086 -23.56542 -22.37238 -21.98383 -21.36706 -20.72691 -18.75519 -17.88532 -17.63071 -17.13272 -16.99460 -16.64053 -16.43898 -16.02929 -15.72898 -15.33736 -14.99533 -14.62155 -14.39544 -14.13307 -13.80944 -13.48795 -13.24581 -12.97273 -12.75083 -12.68470 -12.62488 -12.57698 -12.38144 -12.28049 -11.91571 -11.84275 -11.79650 -11.52033 -11.51000 -11.36272 -10.85058 -10.72173 -10.58147 -9.97952 -8.87713 -7.86840 -5.18122 1.42988 1.44837 1.53307 1.69501 2.29388 2.48212 2.95293 3.33186 3.39176 3.62783 3.75056 3.85709 3.99913 4.05449 4.11094 4.15972 4.18851 4.36289 4.39704 4.47865 4.55926 4.65691 4.72363 4.75317 4.80981 4.85408 4.90354 4.96307 5.06332 5.06583 5.09971 5.12790 5.21590 5.28584 5.34884 5.50985 5.62620 5.76073 5.98992 6.04066 6.61695 6.96558 7.29571 7.66030 8.60712 9.30273 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003974 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.791981 B = 7043.746493 C = 8479.693161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.211 4.211 8 H 0.084 0.916 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.131 4.131 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.715 5.715 16 C 0.506 3.494 17 O -0.591 6.591 18 C -0.131 4.131 19 C -0.091 4.091 20 C 0.074 3.926 21 H 0.089 0.911 22 C -0.150 4.150 23 C -0.151 4.151 24 C 0.036 3.964 25 O -0.405 6.405 26 H 0.245 0.755 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.686 -10.900 -2.361 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.226 1.226 7 C -0.340 4.340 8 H 0.102 0.898 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.365 5.365 16 C 0.294 3.706 17 O -0.472 6.472 18 C -0.171 4.171 19 C -0.129 4.129 20 C 0.017 3.983 21 H 0.107 0.893 22 C -0.188 4.188 23 C -0.188 4.188 24 C -0.040 4.040 25 O -0.325 6.325 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.575 -10.771 -1.571 22.397 hybrid contribution -0.006 1.576 -0.346 1.613 sum 19.569 -9.195 -1.917 21.706 Atomic orbital electron populations 1.70000 1.06233 1.25071 1.59133 1.25488 0.96405 1.00427 1.03999 0.85199 0.78314 0.80529 0.76522 1.19190 1.21904 1.22642 1.19347 0.90695 0.83122 1.40855 0.89782 1.46436 1.03303 1.00026 1.85916 1.22170 0.87120 0.91821 0.96478 1.23571 0.95216 0.97825 1.00370 1.22682 0.93264 0.84518 0.96835 0.90958 1.21509 0.82964 0.99239 0.95619 1.46017 1.05943 1.62936 1.21607 1.21295 0.86331 0.77323 0.85603 1.90635 1.88198 1.46727 1.21656 1.21658 0.90469 1.04026 1.00934 1.21310 0.91554 1.02235 0.97788 1.23316 0.94815 0.80935 0.99271 0.89332 1.23177 0.94275 1.00961 1.00382 1.22934 0.98294 0.95512 1.02086 1.23329 0.80655 0.99157 1.00897 1.88909 1.25993 1.22885 1.94756 0.94606 0.95897 0.94409 0.88681 0.90539 0.90212 0.94492 0.75631 0.88872 0.85976 0.89265 0.92984 0.88203 0.91267 0.88923 0.89829 0.89946 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 11.39 21.65 0.25 -57.81 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.96 46.70 29.55 68.60 2.03 48.73 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 7 C -0.21 -11.51 10.51 84.03 0.88 -10.63 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 N -0.63 -30.81 3.57 -694.07 -2.48 -33.29 16 10 C 0.15 6.93 7.51 86.48 0.65 7.58 16 11 C -0.13 -4.57 7.86 31.27 0.25 -4.33 16 12 C 0.13 4.89 4.33 45.10 0.20 5.08 16 13 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 14 C 0.13 4.66 5.54 86.38 0.48 5.14 16 15 N -0.71 -23.32 5.53 -463.05 -2.56 -25.88 16 16 C 0.51 16.49 7.83 87.66 0.69 17.18 16 17 O -0.59 -23.44 15.98 -3.03 -0.05 -23.48 16 18 C -0.13 -3.19 5.65 29.85 0.17 -3.02 16 19 C -0.09 -2.11 4.26 30.59 0.13 -1.98 16 20 C 0.07 1.38 3.29 31.28 0.10 1.49 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.15 -2.20 6.59 31.89 0.21 -1.99 16 23 C -0.15 -1.84 7.01 31.59 0.22 -1.62 16 24 C 0.04 0.60 7.70 72.36 0.56 1.16 16 25 O -0.41 -9.71 11.08 -148.98 -1.65 -11.36 16 26 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 2.00 7.16 -2.39 -0.02 1.99 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 31 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.41 12.33 8.47 -92.71 -0.79 11.55 16 34 H 0.09 2.43 8.06 -2.39 -0.02 2.41 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.93 8.10 -2.38 -0.02 1.91 16 37 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 38 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.54 351.86 0.73 -71.81 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.20 Total: 20.80 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.00 Total: 10.49 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.79 Total: -116.98 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.70 Total: -34.85 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -72.54 0.73 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754473409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.850 kcal (2) G-P(sol) polarization free energy of solvation -72.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds