Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48503 * 109.47466 * 274.98641 * 3 2 1 5 5 H 1.48501 * 109.47221 * 34.98854 * 3 2 1 6 6 H 1.48500 * 109.46956 * 154.98974 * 3 2 1 7 7 C 1.38807 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00394 * 186.71989 * 7 2 1 9 9 N 1.36939 * 120.00124 * 6.71413 * 7 2 1 10 10 C 1.47068 * 136.05755 * 356.10756 * 9 7 2 11 11 C 1.53500 * 87.98467 * 152.91218 * 10 9 7 12 12 C 1.47074 * 136.05772 * 176.15353 * 9 7 2 13 13 H 1.09006 * 113.46248 * 92.24757 * 12 9 7 14 14 C 1.52998 * 113.46747 * 321.87118 * 12 9 7 15 15 N 1.46498 * 109.47202 * 74.50537 * 14 12 9 16 16 C 1.34779 * 120.00131 * 179.97438 * 15 14 12 17 17 O 1.21275 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00239 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47310 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47005 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.90028 * 54.47493 * 20 19 18 22 22 C 1.54385 * 109.82676 * 175.40993 * 20 19 18 23 23 C 1.55312 * 102.24984 * 140.86950 * 22 20 19 24 24 C 1.54944 * 100.94070 * 325.86548 * 23 22 20 25 25 O 1.43233 * 109.83119 * 293.54369 * 20 19 18 26 26 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.46637 * 267.69312 * 10 9 7 28 28 H 1.08999 * 113.46285 * 38.13700 * 10 9 7 29 29 H 1.08998 * 114.20822 * 272.48001 * 11 10 9 30 30 H 1.08999 * 114.20134 * 139.65495 * 11 10 9 31 31 H 1.08995 * 109.47471 * 314.50396 * 14 12 9 32 32 H 1.08998 * 109.46767 * 194.49917 * 14 12 9 33 33 H 0.97005 * 119.99841 * 359.97438 * 15 14 12 34 34 H 1.09003 * 109.47007 * 60.00085 * 18 16 15 35 35 H 1.09000 * 109.47206 * 300.00714 * 18 16 15 36 36 H 1.08991 * 109.47011 * 60.00116 * 19 18 16 37 37 H 1.08998 * 109.46767 * 299.99735 * 19 18 16 38 38 H 1.08993 * 110.84937 * 259.05521 * 22 20 19 39 39 H 1.08997 * 110.85104 * 22.68085 * 22 20 19 40 40 H 1.08995 * 111.12579 * 83.78894 * 23 22 20 41 41 H 1.09002 * 111.12152 * 207.94562 * 23 22 20 42 42 H 1.09001 * 110.31043 * 277.52713 * 24 23 22 43 43 H 1.08998 * 110.30886 * 155.36320 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0847 -1.2054 0.1089 9 7 1.3326 -2.3839 -0.1397 10 6 -0.0772 -2.7911 -0.2378 11 6 0.3888 -4.0175 -1.0346 12 6 1.6944 -3.8047 -0.2560 13 1 1.7201 -4.3258 0.7011 14 6 2.9506 -4.0468 -1.0951 15 7 4.1348 -3.6593 -0.3246 16 6 5.3625 -3.7866 -0.8659 17 8 5.4869 -4.2224 -1.9908 18 6 6.5806 -3.3875 -0.0735 19 6 7.8368 -3.6297 -0.9126 20 6 9.0735 -3.2251 -0.1077 21 1 9.0796 -3.7456 0.8500 22 6 10.3514 -3.5730 -0.9010 23 6 11.2667 -2.3543 -0.6022 24 6 10.2202 -1.2151 -0.5143 25 8 9.0704 -1.8092 0.1089 26 1 -0.4851 0.8400 0.0004 27 1 -0.5243 -3.0424 0.7239 28 1 -0.6884 -2.1017 -0.8203 29 1 0.4754 -3.8469 -2.1077 30 1 -0.1361 -4.9393 -0.7836 31 1 2.8993 -3.4511 -2.0065 32 1 3.0160 -5.1034 -1.3548 33 1 4.0353 -3.3111 0.5753 34 1 6.6319 -3.9826 0.8383 35 1 6.5153 -2.3308 0.1856 36 1 7.7853 -3.0344 -1.8240 37 1 7.9023 -4.6864 -1.1719 38 1 10.7995 -4.4947 -0.5300 39 1 10.1383 -3.6457 -1.9675 40 1 11.7913 -2.4799 0.3449 41 1 11.9687 -2.1809 -1.4179 42 1 9.9669 -0.8562 -1.5119 43 1 10.6017 -0.3973 0.0971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754473410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = -41.062785 kcal Electronic energy + Delta-G solvation = -22339.775042 eV Core-core repulsion = 19000.327217 eV Total energy + Delta-G solvation = -3339.447826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.84221 -39.17175 -38.03542 -33.99604 -33.45406 -32.29369 -32.19204 -29.17706 -27.99311 -27.28932 -24.27141 -23.45942 -22.09936 -21.68912 -20.87048 -19.93662 -19.13302 -17.16757 -17.07954 -16.44846 -15.87939 -15.57099 -15.45427 -14.91520 -14.47910 -14.04270 -13.81232 -13.66667 -13.55974 -13.23022 -12.98023 -12.54515 -12.04844 -11.91083 -11.81724 -11.52883 -11.46145 -11.14463 -11.09454 -11.02332 -10.96649 -10.83980 -10.74813 -10.54034 -9.96714 -9.81203 -9.64070 -9.53992 -9.15738 -8.74822 -8.48367 -6.89799 -5.76728 -3.08237 3.06321 3.40260 3.45965 3.47025 3.60821 3.71647 4.25889 4.44544 4.54823 4.64128 4.93151 4.97003 4.99646 5.20221 5.24627 5.34088 5.41296 5.43170 5.48164 5.51659 5.57843 5.61657 5.66777 5.74941 5.81047 5.86700 5.93503 6.12690 6.15181 6.26119 6.35350 6.42222 6.61110 6.75327 6.91025 6.97228 7.23226 7.41791 7.57975 7.98342 7.99740 8.66612 9.03716 9.71327 10.64066 11.40813 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.004126 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.321625 B = 6783.884688 C = 8225.524473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.150 3.850 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.558 6.558 18 C -0.138 4.138 19 C -0.110 4.110 20 C 0.078 3.922 21 H 0.080 0.920 22 C -0.152 4.152 23 C -0.157 4.157 24 C 0.049 3.951 25 O -0.376 6.376 26 H 0.253 0.747 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.377 -8.481 0.670 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.437 6.437 18 C -0.178 4.178 19 C -0.148 4.148 20 C 0.021 3.979 21 H 0.098 0.902 22 C -0.189 4.189 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.295 6.295 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.320 -8.299 0.017 19.206 hybrid contribution 0.491 1.056 0.485 1.262 sum 17.810 -7.243 0.503 19.234 Atomic orbital electron populations 1.69840 1.05005 1.25263 1.56367 1.24769 0.95607 0.97432 1.02467 0.86171 0.78713 0.83730 0.77604 1.21590 1.21767 1.20528 1.18870 0.90511 0.81487 1.43277 0.90168 1.45723 1.02624 0.99020 1.85369 1.22051 0.88711 0.91162 0.95594 1.23643 0.97207 0.99124 1.00034 1.22411 0.91960 0.88114 0.95547 0.93534 1.21766 0.83990 0.98734 0.95809 1.46008 1.05879 1.65193 1.19405 1.20663 0.84839 0.77834 0.87118 1.90642 1.86833 1.46682 1.19540 1.21608 0.92686 1.04258 0.99270 1.21699 0.92099 1.02394 0.98626 1.22834 0.94498 0.82255 0.98327 0.90193 1.23184 0.95137 0.98960 1.01638 1.23268 0.98369 0.95135 1.02714 1.23371 0.85269 0.95953 0.98165 1.88472 1.45245 1.19715 1.76092 0.93711 0.95788 0.91041 0.90221 0.92356 0.91240 0.92482 0.76289 0.89389 0.88237 0.90716 0.90380 0.90048 0.90144 0.90477 0.90054 0.92205 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 11.53 55.49 0.64 -26.55 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.21 -5.82 10.54 -15.06 -0.16 -5.98 16 8 H 0.08 2.09 7.49 -52.49 -0.39 1.70 16 9 N -0.60 -14.84 3.65 -176.97 -0.65 -15.48 16 10 C 0.15 3.48 7.42 -8.50 -0.06 3.42 16 11 C -0.16 -2.98 8.03 -26.22 -0.21 -3.19 16 12 C 0.13 2.49 4.10 -72.38 -0.30 2.20 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.27 5.52 -4.04 -0.02 2.25 16 15 N -0.71 -12.48 5.36 -60.30 -0.32 -12.81 16 16 C 0.51 8.75 7.83 -10.99 -0.09 8.67 16 17 O -0.56 -11.32 15.98 5.56 0.09 -11.23 16 18 C -0.14 -1.85 5.61 -27.88 -0.16 -2.01 16 19 C -0.11 -1.36 4.07 -26.73 -0.11 -1.46 16 20 C 0.08 0.82 3.52 -26.01 -0.09 0.73 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.15 -1.23 6.54 -24.78 -0.16 -1.39 16 23 C -0.16 -1.16 7.16 -24.48 -0.18 -1.33 16 24 C 0.05 0.47 7.78 38.18 0.30 0.76 16 25 O -0.38 -4.70 10.63 -35.23 -0.37 -5.08 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.85 7.11 -51.93 -0.37 1.48 16 29 H 0.08 1.48 8.12 -51.93 -0.42 1.05 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.41 7.88 -51.93 -0.41 1.00 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -32.78 350.63 -9.08 -41.86 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.39 Total: 4.31 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.33 Total: 2.38 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.33 Total: -54.84 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -9.08 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754473410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.792 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds