Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48500 * 109.46896 * 274.97905 * 3 2 1 5 5 H 1.48496 * 109.47115 * 34.98449 * 3 2 1 6 6 H 1.48499 * 109.47027 * 154.98359 * 3 2 1 7 7 C 1.38812 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00241 * 186.72800 * 7 2 1 9 9 N 1.36935 * 119.99770 * 6.72152 * 7 2 1 10 10 C 1.47073 * 136.05908 * 356.11724 * 9 7 2 11 11 C 1.53616 * 88.00482 * 152.96185 * 10 9 7 12 12 C 1.47073 * 136.05962 * 176.16184 * 9 7 2 13 13 H 1.08997 * 113.46273 * 92.24919 * 12 9 7 14 14 C 1.53002 * 113.46552 * 321.87395 * 12 9 7 15 15 N 1.46501 * 109.47193 * 75.40680 * 14 12 9 16 16 C 1.34778 * 119.99927 * 179.72270 * 15 14 12 17 17 O 1.21285 * 119.99738 * 0.27646 * 16 15 14 18 18 C 1.50692 * 120.00269 * 180.27522 * 16 15 14 19 19 C 1.52995 * 109.47438 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47386 * 180.02562 * 19 18 16 21 21 H 1.09003 * 110.32380 * 307.24799 * 20 19 18 22 22 C 1.54475 * 110.37264 * 185.00285 * 20 19 18 23 23 C 1.54509 * 104.06130 * 217.18822 * 22 20 19 24 24 C 1.54477 * 104.06270 * 359.97438 * 23 22 20 25 25 O 1.44425 * 104.80588 * 23.97972 * 24 23 22 26 26 H 0.96998 * 120.00388 * 359.97438 * 1 2 3 27 27 H 1.08990 * 113.46812 * 267.69462 * 10 9 7 28 28 H 1.09001 * 113.46217 * 38.07284 * 10 9 7 29 29 H 1.09003 * 114.20753 * 272.45418 * 11 10 9 30 30 H 1.09003 * 114.24003 * 139.59753 * 11 10 9 31 31 H 1.09004 * 109.46879 * 315.40621 * 14 12 9 32 32 H 1.08997 * 109.46725 * 195.41011 * 14 12 9 33 33 H 0.96996 * 119.99989 * 359.97438 * 15 14 12 34 34 H 1.09000 * 109.47301 * 300.00699 * 18 16 15 35 35 H 1.09007 * 109.47006 * 60.00259 * 18 16 15 36 36 H 1.09003 * 109.46945 * 299.99878 * 19 18 16 37 37 H 1.08999 * 109.47087 * 59.99801 * 19 18 16 38 38 H 1.08999 * 110.51160 * 335.82606 * 22 20 19 39 39 H 1.09001 * 110.51284 * 98.54379 * 22 20 19 40 40 H 1.09000 * 110.51359 * 118.64115 * 23 22 20 41 41 H 1.08996 * 110.51211 * 241.35577 * 23 22 20 42 42 H 1.09003 * 110.37611 * 142.80865 * 24 23 22 43 43 H 1.09006 * 110.37510 * 265.15099 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5963 1.4121 0.5921 7 6 2.0103 -1.2021 -0.0005 8 1 3.0847 -1.2054 0.1090 9 7 1.3327 -2.3839 -0.1399 10 6 -0.0772 -2.7910 -0.2384 11 6 0.3890 -4.0193 -1.0345 12 6 1.6944 -3.8047 -0.2561 13 1 1.7198 -4.3257 0.7009 14 6 2.9509 -4.0468 -1.0949 15 7 4.1362 -3.6797 -0.3161 16 6 5.3645 -3.8154 -0.8540 17 8 5.4882 -4.2368 -1.9845 18 6 6.5841 -3.4436 -0.0508 19 6 7.8408 -3.6904 -0.8878 20 6 9.0791 -3.3135 -0.0720 21 1 8.9815 -2.3003 0.3182 22 6 10.3518 -3.4355 -0.9389 23 6 11.4196 -3.9798 0.0363 24 6 10.6658 -4.1216 1.3772 25 8 9.2759 -4.2525 1.0072 26 1 -0.4850 0.8400 0.0004 27 1 -0.5245 -3.0423 0.7232 28 1 -0.6885 -2.1011 -0.8201 29 1 0.4756 -3.8497 -2.1078 30 1 -0.1353 -4.9412 -0.7826 31 1 2.9071 -3.4389 -1.9986 32 1 3.0077 -5.1005 -1.3682 33 1 4.0371 -3.3423 0.5879 34 1 6.5315 -2.3898 0.2230 35 1 6.6236 -4.0522 0.8527 36 1 7.8936 -4.7441 -1.1618 37 1 7.8011 -3.0816 -1.7910 38 1 10.1902 -4.1362 -1.7581 39 1 10.6475 -2.4592 -1.3229 40 1 11.7858 -4.9496 -0.3008 41 1 12.2431 -3.2726 0.1345 42 1 11.0021 -5.0114 1.9094 43 1 10.8128 -3.2329 1.9910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754473411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = -41.299537 kcal Electronic energy + Delta-G solvation = -22216.564861 eV Core-core repulsion = 18877.106769 eV Total energy + Delta-G solvation = -3339.458092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81102 -39.18445 -38.04263 -34.02012 -33.52818 -32.26831 -32.20706 -29.17309 -28.00485 -27.27653 -24.29755 -23.47646 -22.18612 -21.55214 -21.03963 -19.98919 -19.14800 -17.12010 -16.63662 -16.40832 -15.95171 -15.72980 -15.41266 -15.25164 -14.74957 -14.09662 -13.94956 -13.66256 -13.41121 -13.06926 -12.95710 -12.65412 -12.01427 -11.86908 -11.75882 -11.59625 -11.47922 -11.16421 -11.08470 -10.98616 -10.90847 -10.82938 -10.77212 -10.56241 -9.98914 -9.94180 -9.82985 -9.56206 -9.17085 -8.76802 -8.49763 -6.91477 -5.78724 -3.10124 3.04983 3.37062 3.41590 3.44210 3.62547 3.69749 4.36579 4.42107 4.49269 4.67969 4.82506 4.95815 5.00468 5.18556 5.20325 5.30850 5.38973 5.42322 5.46437 5.51908 5.55709 5.58949 5.70744 5.72630 5.80262 5.85025 5.92901 6.02909 6.14621 6.22557 6.34628 6.41745 6.60360 6.68050 6.74512 6.96080 7.21951 7.40853 7.56357 7.96305 7.98172 8.65062 9.01598 9.69177 10.62636 11.38905 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003709 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.686929 B = 7547.790356 C = 8607.379393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.150 3.850 11 C -0.161 4.161 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.557 6.557 18 C -0.140 4.140 19 C -0.094 4.094 20 C 0.072 3.928 21 H 0.071 0.929 22 C -0.152 4.152 23 C -0.156 4.156 24 C 0.044 3.956 25 O -0.370 6.370 26 H 0.253 0.747 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.291 -8.352 1.508 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.296 3.704 17 O -0.436 6.436 18 C -0.180 4.180 19 C -0.132 4.132 20 C 0.015 3.985 21 H 0.088 0.912 22 C -0.189 4.189 23 C -0.194 4.194 24 C -0.034 4.034 25 O -0.289 6.289 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.229 -8.410 0.830 19.190 hybrid contribution 0.546 1.325 0.582 1.546 sum 17.776 -7.085 1.411 19.188 Atomic orbital electron populations 1.69837 1.05007 1.25273 1.56335 1.24779 0.95614 0.97435 1.02522 0.86161 0.78595 0.83770 0.77580 1.21584 1.21756 1.20678 1.18858 0.90487 0.81499 1.43269 0.90208 1.45718 1.02644 0.99032 1.85361 1.22072 0.88684 0.91145 0.95611 1.23663 0.97215 0.99126 1.00032 1.22409 0.91959 0.88072 0.95577 0.93510 1.21775 0.83914 0.98973 0.95652 1.46000 1.05803 1.65775 1.18903 1.20618 0.84802 0.77770 0.87229 1.90651 1.86858 1.46804 1.19254 1.21639 0.92724 1.03722 0.99945 1.21381 0.90710 1.03692 0.97449 1.23111 0.95083 0.93149 0.87169 0.91157 1.22989 0.94662 1.02249 0.99045 1.22939 0.98658 1.02062 0.95716 1.23381 0.81970 1.01775 0.96224 1.89157 1.26151 1.61009 1.52612 0.93685 0.95789 0.91030 0.90216 0.92322 0.91182 0.92437 0.76315 0.89012 0.88584 0.90354 0.89807 0.90304 0.90477 0.90745 0.90707 0.89265 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 11.53 55.49 0.64 -26.34 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.21 -5.74 10.54 -15.06 -0.16 -5.90 16 8 H 0.08 2.05 7.67 -52.49 -0.40 1.64 16 9 N -0.60 -14.73 3.65 -176.78 -0.65 -15.38 16 10 C 0.15 3.47 7.42 -8.44 -0.06 3.40 16 11 C -0.16 -2.97 8.04 -26.16 -0.21 -3.18 16 12 C 0.13 2.48 4.10 -72.39 -0.30 2.19 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.25 5.52 -4.04 -0.02 2.23 16 15 N -0.71 -12.35 5.44 -60.29 -0.33 -12.68 16 16 C 0.51 8.66 7.83 -10.99 -0.09 8.58 16 17 O -0.56 -11.21 15.98 5.55 0.09 -11.12 16 18 C -0.14 -1.84 5.64 -27.89 -0.16 -2.00 16 19 C -0.09 -1.16 4.13 -26.73 -0.11 -1.27 16 20 C 0.07 0.76 3.25 -25.95 -0.08 0.67 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.15 -1.29 6.63 -25.17 -0.17 -1.46 16 23 C -0.16 -1.14 7.09 -25.16 -0.18 -1.32 16 24 C 0.04 0.36 7.63 37.93 0.29 0.65 16 25 O -0.37 -4.31 11.13 -35.23 -0.39 -4.70 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.84 7.11 -51.93 -0.37 1.47 16 29 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 6.60 8.43 -40.82 -0.34 6.25 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.17 8.01 -51.92 -0.42 0.76 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -32.31 351.35 -9.12 -41.43 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.41 Total: 4.27 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.34 Total: 2.31 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.33 Total: -54.40 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.30 Total: -15.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.31 -9.12 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754473411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.126 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds