Wall clock time and date at job start Tue Mar 31 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47073 * 239.99621 * 3 2 1 5 5 H 1.48504 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47189 * 120.00057 * 3 2 1 7 7 C 1.38816 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99643 * 0.02562 * 7 2 1 10 10 C 1.47065 * 136.05991 * 359.94465 * 9 7 2 11 11 C 1.53500 * 87.98280 * 207.16125 * 10 9 7 12 12 C 1.47069 * 136.05219 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.46251 * 267.67459 * 12 9 7 14 14 C 1.52997 * 113.47230 * 38.05848 * 12 9 7 15 15 N 1.46496 * 109.47194 * 285.49745 * 14 12 9 16 16 C 1.34779 * 120.00054 * 179.97438 * 15 14 12 17 17 O 1.21273 * 120.00093 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99767 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46735 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 16 21 21 H 1.09008 * 109.87086 * 53.99464 * 20 19 18 22 22 C 1.54094 * 109.88146 * 175.00362 * 20 19 18 23 23 C 1.54808 * 104.19256 * 121.45338 * 22 20 19 24 24 C 1.54998 * 102.09117 * 20.88148 * 23 22 20 25 25 O 1.43747 * 109.88055 * 292.83555 * 20 19 18 26 26 H 0.96993 * 119.99955 * 359.97438 * 1 2 3 27 27 H 1.09005 * 113.46704 * 321.93163 * 10 9 7 28 28 H 1.08998 * 113.46956 * 92.32200 * 10 9 7 29 29 H 1.09002 * 114.20037 * 220.34229 * 11 10 9 30 30 H 1.08998 * 114.21359 * 87.52380 * 11 10 9 31 31 H 1.08998 * 109.47624 * 165.49242 * 14 12 9 32 32 H 1.09002 * 109.47045 * 45.49619 * 14 12 9 33 33 H 0.97005 * 120.00266 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.46797 * 60.00350 * 18 16 15 35 35 H 1.08992 * 109.47518 * 300.00347 * 18 16 15 36 36 H 1.09002 * 109.47398 * 300.00410 * 19 18 16 37 37 H 1.09001 * 109.47194 * 60.00591 * 19 18 16 38 38 H 1.09005 * 110.48825 * 240.12897 * 22 20 19 39 39 H 1.09002 * 110.49084 * 2.77415 * 22 20 19 40 40 H 1.08998 * 110.90817 * 139.07795 * 23 22 20 41 41 H 1.08992 * 110.91004 * 262.65121 * 23 22 20 42 42 H 1.09005 * 110.62027 * 81.47743 * 24 23 22 43 43 H 1.08997 * 110.62148 * 204.31633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7949 0.0011 11 6 0.3421 -4.0917 0.7008 12 6 1.6800 -3.8154 0.0015 13 1 1.7460 -4.2468 -0.9974 14 6 2.8987 -4.1401 0.8677 15 7 4.1154 -3.6900 0.1872 16 6 5.3184 -3.8721 0.7670 17 8 5.3937 -4.4089 1.8518 18 6 6.5701 -3.4095 0.0667 19 6 7.7887 -3.7342 0.9330 20 6 9.0595 -3.2641 0.2223 21 1 8.9687 -2.2100 -0.0404 22 6 10.2802 -3.4723 1.1393 23 6 11.2118 -4.4033 0.3256 24 6 10.7044 -4.1850 -1.1226 25 8 9.2760 -4.0491 -0.9622 26 1 -0.4850 0.8400 0.0004 27 1 -0.7223 -2.1586 0.6181 28 1 -0.4941 -2.9536 -0.9978 29 1 -0.1730 -4.9837 0.3442 30 1 0.3831 -4.0208 1.7877 31 1 2.9513 -5.2163 1.0321 32 1 2.8090 -3.6301 1.8268 33 1 4.0553 -3.2610 -0.6807 34 1 6.5175 -2.3334 -0.0984 35 1 6.6599 -3.9202 -0.8920 36 1 7.6992 -3.2238 1.8920 37 1 7.8412 -4.8104 1.0976 38 1 10.7729 -2.5210 1.3406 39 1 9.9803 -3.9522 2.0709 40 1 12.2525 -4.0947 0.4239 41 1 11.0857 -5.4422 0.6300 42 1 11.1313 -3.2758 -1.5460 43 1 10.9428 -5.0462 -1.7468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754473412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:59 Heat of formation + Delta-G solvation = -40.956606 kcal Electronic energy + Delta-G solvation = -22250.846165 eV Core-core repulsion = 18911.402944 eV Total energy + Delta-G solvation = -3339.443221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.83515 -39.18002 -38.04062 -34.00702 -33.50749 -32.27790 -32.20076 -29.16711 -27.99538 -27.26566 -24.20269 -23.46727 -22.26620 -21.63252 -20.98363 -19.98335 -19.15098 -17.10684 -16.59078 -16.38139 -16.05064 -15.69552 -15.38687 -15.25145 -14.71079 -14.08432 -13.85876 -13.67935 -13.39216 -13.06034 -12.98769 -12.64349 -12.05174 -11.88193 -11.82079 -11.55484 -11.47346 -11.10584 -11.08894 -10.99212 -10.95252 -10.78254 -10.76413 -10.57828 -9.99166 -9.84496 -9.83810 -9.54421 -9.13924 -8.81194 -8.48690 -6.90056 -5.77115 -3.09659 3.06203 3.37620 3.41905 3.43386 3.63269 3.68131 4.32977 4.42785 4.52419 4.67717 4.81666 4.98060 5.00805 5.18720 5.20869 5.34926 5.40196 5.43347 5.44327 5.53481 5.56615 5.58813 5.70397 5.73610 5.82623 5.86617 5.93628 6.06693 6.15181 6.24619 6.34835 6.42508 6.61011 6.74410 6.75164 6.96978 7.22830 7.40287 7.57329 7.97156 7.99404 8.66218 9.02565 9.69867 10.63195 11.40153 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.003740 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.524797 B = 7485.703783 C = 8558.225274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.557 6.557 18 C -0.140 4.140 19 C -0.098 4.098 20 C 0.074 3.926 21 H 0.070 0.930 22 C -0.153 4.153 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.372 6.372 26 H 0.254 0.746 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.409 -8.606 -1.212 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.296 3.704 17 O -0.436 6.436 18 C -0.180 4.180 19 C -0.136 4.136 20 C 0.017 3.983 21 H 0.088 0.912 22 C -0.191 4.191 23 C -0.193 4.193 24 C -0.031 4.031 25 O -0.291 6.291 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.299 -8.680 -0.571 19.363 hybrid contribution 0.567 1.339 -0.485 1.533 sum 17.866 -7.341 -1.056 19.345 Atomic orbital electron populations 1.69815 1.04989 1.25396 1.56404 1.24777 0.95641 0.97427 1.02575 0.86253 0.78543 0.83405 0.77886 1.21196 1.21548 1.21126 1.18814 0.89993 0.81381 1.43960 0.90237 1.45666 1.02607 0.98586 1.85893 1.22028 0.88707 0.90206 0.96481 1.23655 0.96989 0.99026 1.00369 1.22410 0.92096 0.87716 0.95832 0.93482 1.21769 0.83338 0.98084 0.97130 1.46006 1.06074 1.60973 1.23440 1.20642 0.85114 0.78813 0.85860 1.90644 1.87334 1.44232 1.21430 1.21632 0.92508 1.03194 1.00630 1.21510 0.91060 1.03035 0.98023 1.22852 0.95079 0.95266 0.85146 0.91216 1.23008 0.95815 1.00419 0.99825 1.23128 0.99749 1.00808 0.95660 1.23522 0.81787 1.01262 0.96577 1.88907 1.22264 1.73528 1.44433 0.93632 0.91013 0.95750 0.92357 0.90226 0.92456 0.91252 0.76265 0.89030 0.88568 0.90004 0.90526 0.90656 0.90038 0.90418 0.90491 0.92332 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 11.51 55.49 0.64 -26.43 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.21 -5.76 10.55 -15.06 -0.16 -5.92 16 8 H 0.08 2.04 7.50 -52.49 -0.39 1.64 16 9 N -0.60 -14.77 3.65 -176.98 -0.65 -15.42 16 10 C 0.15 3.50 7.39 -8.50 -0.06 3.43 16 11 C -0.16 -2.98 8.03 -26.23 -0.21 -3.19 16 12 C 0.13 2.49 4.10 -72.40 -0.30 2.19 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.26 5.52 -4.05 -0.02 2.24 16 15 N -0.72 -12.45 5.33 -60.30 -0.32 -12.77 16 16 C 0.51 8.73 7.83 -10.98 -0.09 8.65 16 17 O -0.56 -11.29 15.98 5.56 0.09 -11.20 16 18 C -0.14 -1.86 5.62 -27.88 -0.16 -2.02 16 19 C -0.10 -1.21 3.99 -26.73 -0.11 -1.32 16 20 C 0.07 0.78 3.41 -26.16 -0.09 0.69 16 21 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 22 C -0.15 -1.28 6.64 -25.21 -0.17 -1.45 16 23 C -0.16 -1.14 7.15 -24.72 -0.18 -1.32 16 24 C 0.05 0.38 7.72 38.21 0.29 0.67 16 25 O -0.37 -4.32 10.84 -35.23 -0.38 -4.70 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 6.68 8.37 -40.82 -0.34 6.34 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.20 7.91 -51.93 -0.41 0.79 16 36 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -32.36 350.58 -9.08 -41.44 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.39 Total: 4.55 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.34 Total: 2.34 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.33 Total: -54.63 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.29 Total: -15.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.36 -9.08 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754473412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.486 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds