Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46644 * 119.99951 * 3 2 1 6 6 H 1.48501 * 109.47175 * 239.99814 * 3 2 1 7 7 C 1.38810 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99591 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00133 * 174.96508 * 9 7 2 11 11 C 1.53002 * 115.54907 * 65.27450 * 10 9 7 12 12 N 1.46506 * 109.46949 * 80.39625 * 11 10 9 13 13 C 1.34775 * 120.00390 * 174.94667 * 12 11 10 14 14 O 1.21284 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.50690 * 120.00350 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47120 * 300.00247 * 15 13 12 17 17 C 1.52999 * 109.47163 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47170 * 59.99700 * 17 16 15 19 19 O 1.42902 * 109.46828 * 60.00245 * 18 17 16 20 20 C 1.52991 * 109.47066 * 299.99951 * 18 17 16 21 21 C 1.52995 * 109.47260 * 180.02562 * 15 13 12 22 22 C 1.52995 * 117.50007 * 279.60900 * 10 9 7 23 23 C 1.52996 * 117.50445 * 210.94836 * 10 9 7 24 24 H 0.97009 * 120.00254 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00347 * 354.96526 * 9 7 2 26 26 H 1.08996 * 109.47311 * 200.39174 * 11 10 9 27 27 H 1.08994 * 109.47398 * 320.39636 * 11 10 9 28 28 H 0.97006 * 119.99685 * 354.94529 * 12 11 10 29 29 H 1.09000 * 109.47163 * 59.99983 * 15 13 12 30 30 H 1.09004 * 109.47057 * 299.99420 * 16 15 13 31 31 H 1.08994 * 109.47349 * 60.00194 * 16 15 13 32 32 H 1.09000 * 109.47171 * 299.99767 * 17 16 15 33 33 H 1.09000 * 109.47434 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47053 * 179.97438 * 18 17 16 35 35 H 0.96695 * 114.00250 * 60.00279 * 19 18 17 36 36 H 1.08995 * 109.47903 * 299.99745 * 20 18 17 37 37 H 1.09008 * 109.47103 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.47211 * 299.99368 * 21 15 13 39 39 H 1.09004 * 109.47559 * 60.00187 * 21 15 13 40 40 H 1.08997 * 117.50148 * 0.02562 * 22 10 9 41 41 H 1.09010 * 117.49961 * 145.01816 * 22 10 9 42 42 H 1.08994 * 117.50449 * 214.98055 * 23 10 9 43 43 H 1.09009 * 117.49494 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6962 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0535 -3.6544 -0.1124 11 6 2.9764 -3.9908 1.0606 12 7 2.1846 -4.5464 2.1610 13 6 2.7999 -5.0119 3.2661 14 8 4.0092 -4.9704 3.3497 15 6 1.9855 -5.5829 4.3981 16 6 1.0306 -4.5123 4.9300 17 6 0.2033 -5.0921 6.0789 18 6 1.1379 -5.5455 7.2023 19 8 1.8917 -4.4274 7.6751 20 6 2.0927 -6.6161 6.6704 21 6 2.9205 -6.0352 5.5215 22 6 2.4982 -4.0925 -1.5092 23 6 1.3454 -4.8173 -0.8102 24 1 -0.4851 0.8401 0.0004 25 1 0.3583 -2.3897 0.0736 26 1 3.7181 -4.7228 0.7411 27 1 3.4810 -3.0853 1.3973 28 1 1.2174 -4.5793 2.0942 29 1 1.4105 -6.4359 4.0378 30 1 1.6056 -3.6592 5.2903 31 1 0.3645 -4.1896 4.1299 32 1 -0.3717 -5.9450 5.7183 33 1 -0.4767 -4.3293 6.4582 34 1 0.5484 -5.9582 8.0210 35 1 1.3497 -3.7084 8.0277 36 1 1.5178 -7.4690 6.3097 37 1 2.7588 -6.9388 7.4706 38 1 3.6010 -6.7979 5.1429 39 1 3.4952 -5.1819 5.8817 40 1 2.2495 -3.4384 -2.3449 41 1 3.4481 -4.6209 -1.5924 42 1 1.5371 -5.8221 -0.4339 43 1 0.3375 -4.6403 -1.1857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754513794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -71.318852 kcal Electronic energy + Delta-G solvation = -22831.603544 eV Core-core repulsion = 19490.843717 eV Total energy + Delta-G solvation = -3340.759827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09855 -38.51270 -37.40509 -34.97304 -33.72759 -33.00855 -30.89188 -30.23574 -29.69924 -26.50739 -23.91616 -23.22050 -22.73458 -21.84769 -20.27555 -19.63710 -19.00707 -17.20447 -17.05763 -16.74793 -15.95416 -15.59504 -15.22940 -14.90495 -14.37081 -14.10274 -13.96303 -13.49845 -13.38666 -13.08600 -12.95535 -12.54041 -12.35683 -12.07818 -11.90533 -11.85994 -11.38693 -11.12863 -11.00026 -10.95636 -10.86544 -10.58485 -10.32232 -10.28622 -10.23939 -9.92415 -9.70826 -9.50057 -9.25734 -8.84073 -8.54765 -7.07562 -5.84245 -3.14633 2.99248 3.42209 3.46423 3.47792 3.53037 4.11154 4.42580 4.54443 4.58654 4.62660 4.76666 5.00342 5.10553 5.17054 5.24621 5.25889 5.29992 5.38329 5.39792 5.48588 5.64439 5.65688 5.68667 5.82231 5.85309 5.89166 6.08405 6.09943 6.13813 6.24244 6.28191 6.43581 6.47200 6.57859 6.67674 6.78321 6.91616 7.53483 7.68696 7.94717 8.33975 8.61906 9.45287 9.98466 10.33963 11.37634 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.004467 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.448941 B = 6266.516908 C = 7152.216454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.689 5.689 10 C 0.128 3.872 11 C 0.147 3.853 12 N -0.711 5.711 13 C 0.513 3.487 14 O -0.550 6.550 15 C -0.103 4.103 16 C -0.107 4.107 17 C -0.150 4.150 18 C 0.103 3.897 19 O -0.562 6.562 20 C -0.112 4.112 21 C -0.094 4.094 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.256 0.744 25 H 0.387 0.613 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.400 0.600 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.375 0.625 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -14.197 11.014 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.034 3.966 11 C 0.021 3.979 12 N -0.361 5.361 13 C 0.298 3.702 14 O -0.429 6.429 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.188 4.188 18 C 0.044 3.956 19 O -0.367 6.367 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.066 0.934 25 H 0.222 0.778 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.234 0.766 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.015 -14.342 10.853 17.985 hybrid contribution -0.948 1.333 -0.021 1.635 sum -0.932 -13.009 10.832 16.954 Atomic orbital electron populations 1.69648 1.05120 1.25940 1.57323 1.24738 0.95503 0.97706 1.02535 0.86262 0.78572 0.83328 0.78023 1.21676 1.21141 1.21123 1.19125 0.91137 0.83522 1.43088 0.91045 1.41761 1.05664 0.98510 1.86878 1.20180 0.97461 0.88171 0.90812 1.21227 0.92798 0.97977 0.85849 1.45944 1.10784 1.61908 1.17468 1.20568 0.88461 0.77987 0.83141 1.90666 1.14574 1.56981 1.80631 1.21316 0.97392 0.99252 0.94525 1.21431 0.97390 0.97923 0.97781 1.22245 0.98082 1.01519 0.96912 1.21798 0.92129 0.87393 0.94266 1.86556 1.37503 1.29590 1.83040 1.21583 0.98317 0.96521 0.98527 1.21244 0.96898 1.01840 0.93228 1.23365 0.97319 1.03549 0.98556 1.23068 0.97806 0.95888 1.05559 0.93392 0.77785 0.92265 0.90784 0.76641 0.89160 0.90564 0.91142 0.90908 0.91351 0.93033 0.77789 0.90784 0.91179 0.91553 0.90252 0.88615 0.89966 0.89535 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.41 9.56 -15.06 -0.14 -6.56 16 8 H 0.07 1.92 7.77 -52.48 -0.41 1.51 16 9 N -0.69 -16.39 5.49 -47.23 -0.26 -16.65 16 10 C 0.13 2.45 2.15 -131.82 -0.28 2.16 16 11 C 0.15 2.73 5.73 -4.04 -0.02 2.71 16 12 N -0.71 -11.52 5.41 -60.30 -0.33 -11.85 16 13 C 0.51 8.41 7.15 -10.99 -0.08 8.33 16 14 O -0.55 -11.11 15.98 5.55 0.09 -11.02 16 15 C -0.10 -1.27 2.53 -91.78 -0.23 -1.51 16 16 C -0.11 -1.25 4.95 -26.73 -0.13 -1.38 16 17 C -0.15 -1.31 5.64 -26.73 -0.15 -1.46 16 18 C 0.10 0.92 3.77 -26.73 -0.10 0.82 16 19 O -0.56 -5.90 11.97 -35.23 -0.42 -6.32 16 20 C -0.11 -1.06 5.67 -26.71 -0.15 -1.21 16 21 C -0.09 -1.16 4.35 -26.70 -0.12 -1.28 16 22 C -0.19 -3.27 10.11 -26.70 -0.27 -3.54 16 23 C -0.19 -2.95 10.14 -26.70 -0.27 -3.22 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.39 9.75 8.04 -40.82 -0.33 9.42 16 26 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 27 H 0.07 1.61 7.73 -51.93 -0.40 1.20 16 28 H 0.40 5.85 7.90 -40.82 -0.32 5.52 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 31 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 2.57 9.08 45.56 0.41 2.98 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 40 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.08 1.28 8.08 -51.92 -0.42 0.86 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -32.04 349.13 -8.43 -40.47 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.43 Total: 15.89 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.05 Total: -6.48 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.14 Total: -55.04 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.33 Total: -17.34 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.04 -8.43 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754513794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.847 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds