Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47382 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.46921 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.46863 * 149.99779 * 3 2 1 7 7 C 1.38810 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00179 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00255 * 173.81232 * 9 7 2 11 11 C 1.53002 * 112.85258 * 294.79191 * 10 9 7 12 12 N 1.46506 * 109.46747 * 292.02220 * 11 10 9 13 13 C 1.34771 * 119.99837 * 176.14427 * 12 11 10 14 14 O 1.21285 * 120.00130 * 359.72288 * 13 12 11 15 15 C 1.50697 * 120.00296 * 179.72553 * 13 12 11 16 16 C 1.52994 * 109.47264 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.27382 * 54.30321 * 16 15 13 18 18 C 1.54950 * 110.31045 * 176.38809 * 16 15 13 19 19 C 1.55417 * 100.89384 * 155.28927 * 18 16 15 20 20 C 1.54382 * 102.30621 * 325.99284 * 19 18 16 21 21 O 1.43230 * 107.59120 * 21.28484 * 20 19 18 22 22 C 1.53787 * 113.68474 * 66.05632 * 10 9 7 23 23 C 1.53783 * 87.07820 * 89.13028 * 22 10 9 24 24 C 1.53778 * 87.08544 * 25.42883 * 23 22 10 25 25 H 0.96998 * 120.00473 * 0.02562 * 1 2 3 26 26 H 0.97006 * 120.00241 * 353.82354 * 9 7 2 27 27 H 1.08994 * 109.46904 * 172.02295 * 11 10 9 28 28 H 1.08994 * 109.47049 * 52.02216 * 11 10 9 29 29 H 0.97001 * 120.00053 * 355.87218 * 12 11 10 30 30 H 1.08999 * 109.46711 * 300.00079 * 15 13 12 31 31 H 1.09001 * 109.46987 * 60.00122 * 15 13 12 32 32 H 1.08994 * 111.12993 * 273.28235 * 18 16 15 33 33 H 1.09005 * 111.12483 * 37.44318 * 18 16 15 34 34 H 1.09002 * 110.88184 * 207.75613 * 19 18 16 35 35 H 1.08994 * 110.93498 * 84.25464 * 19 18 16 36 36 H 1.09004 * 109.82802 * 261.76988 * 20 19 18 37 37 H 1.08997 * 109.90543 * 140.84423 * 20 19 18 38 38 H 1.09000 * 113.61221 * 203.67120 * 22 10 9 39 39 H 1.08994 * 113.61809 * 334.57721 * 22 10 9 40 40 H 1.09006 * 113.61224 * 270.87668 * 23 22 10 41 41 H 1.09002 * 113.69154 * 139.99519 * 23 22 10 42 42 H 1.08996 * 113.61800 * 220.02054 * 24 23 22 43 43 H 1.09002 * 113.61139 * 89.11381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4635 0.1351 11 6 3.8979 -3.1313 1.4949 12 7 4.5247 -2.3201 2.5415 13 6 4.3969 -2.6741 3.8356 14 8 3.7588 -3.6613 4.1341 15 6 5.0469 -1.8432 4.9118 16 6 4.7492 -2.4583 6.2807 17 1 5.0491 -3.5061 6.2972 18 6 5.4835 -1.6712 7.3952 19 6 4.5860 -1.9934 8.6224 20 6 3.1808 -2.0799 7.9888 21 8 3.3519 -2.3346 6.5897 22 6 3.9257 -3.4179 -1.0562 23 6 5.1364 -2.7230 -1.7013 24 6 5.5906 -2.3647 -0.2765 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3669 -0.0915 27 1 4.3472 -4.1243 1.4868 28 1 2.8295 -3.2175 1.6930 29 1 5.0350 -1.5305 2.3028 30 1 6.1246 -1.8187 4.7507 31 1 4.6509 -0.8283 4.8761 32 1 6.4969 -2.0461 7.5385 33 1 5.4886 -0.6020 7.1830 34 1 4.6310 -1.1904 9.3582 35 1 4.8681 -2.9453 9.0720 36 1 2.6524 -1.1372 8.1311 37 1 2.6168 -2.8926 8.4464 38 1 4.1036 -4.4645 -0.8091 39 1 2.9930 -3.2626 -1.5983 40 1 4.8710 -1.8558 -2.3061 41 1 5.8113 -3.4072 -2.2158 42 1 6.0019 -1.3591 -0.1893 43 1 6.2236 -3.1234 0.1837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754978040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -53.704271 kcal Electronic energy + Delta-G solvation = -22866.730759 eV Core-core repulsion = 19526.734757 eV Total energy + Delta-G solvation = -3339.996002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89460 -39.17358 -38.17199 -33.82158 -33.26094 -32.40063 -31.72273 -30.54792 -27.94051 -26.08590 -25.33709 -23.55545 -22.08995 -21.69899 -21.19110 -19.83872 -18.26357 -17.63979 -17.13719 -16.54199 -16.06204 -15.38209 -15.22002 -14.79103 -14.51697 -14.24915 -14.14924 -13.66252 -13.25801 -13.00743 -12.70923 -12.69238 -12.44773 -11.95298 -11.85333 -11.72475 -11.45277 -11.33590 -11.19113 -11.15307 -10.96432 -10.91616 -10.44991 -10.25316 -10.13414 -9.68283 -9.49795 -9.43571 -9.36357 -8.87410 -8.44026 -7.31296 -5.77493 -3.15061 3.12368 3.33349 3.35294 3.42915 3.63474 3.82121 4.32622 4.56420 4.61676 4.76958 5.00212 5.01892 5.04516 5.10443 5.13119 5.20549 5.32430 5.39960 5.45150 5.47060 5.50249 5.61609 5.64062 5.71030 5.75526 5.88007 5.99578 6.05726 6.07724 6.12393 6.21404 6.27306 6.58976 6.67920 6.85617 6.91423 7.06395 7.13340 7.99265 8.02871 8.41136 8.74358 9.18080 9.89541 10.07754 11.40570 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.004857 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.585388 B = 5763.549947 C = 6779.653731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.179 3.821 11 C 0.121 3.879 12 N -0.713 5.713 13 C 0.510 3.490 14 O -0.538 6.538 15 C -0.143 4.143 16 C 0.099 3.901 17 H 0.077 0.923 18 C -0.154 4.154 19 C -0.155 4.155 20 C 0.047 3.953 21 O -0.361 6.361 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.147 4.147 25 H 0.259 0.741 26 H 0.362 0.638 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.395 0.605 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 -3.067 11.080 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.366 5.366 10 C 0.086 3.914 11 C -0.005 4.005 12 N -0.363 5.363 13 C 0.295 3.705 14 O -0.415 6.415 15 C -0.183 4.183 16 C 0.041 3.959 17 H 0.095 0.905 18 C -0.192 4.192 19 C -0.193 4.193 20 C -0.029 4.029 21 O -0.281 6.281 22 C -0.188 4.188 23 C -0.167 4.167 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.196 0.804 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.228 0.772 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.077 -3.845 11.154 19.144 hybrid contribution 0.826 1.793 0.039 1.975 sum 15.903 -2.052 11.193 19.555 Atomic orbital electron populations 1.69692 1.05114 1.25784 1.57104 1.24662 0.95144 0.97045 1.01863 0.86599 0.79216 0.85330 0.77607 1.21210 1.21841 1.20375 1.18938 0.80193 0.94723 1.43117 0.89054 1.42383 1.03913 1.01754 1.88552 1.20751 0.90764 0.88561 0.91283 1.21799 0.99047 0.92457 0.87193 1.45777 1.54466 1.30188 1.05830 1.20359 0.80997 0.85695 0.83407 1.90697 1.40855 1.27689 1.82228 1.21864 1.01861 1.01223 0.93394 1.22652 0.81909 0.98901 0.92398 0.90525 1.23367 0.99650 1.01501 0.94633 1.23120 0.95282 1.02632 0.98240 1.23112 0.96502 1.00867 0.82466 1.88619 1.23512 1.92837 1.23085 1.23276 0.99229 0.97665 0.98604 1.22655 0.97802 1.00554 0.95738 1.23191 0.96481 1.01186 0.97599 0.93040 0.80427 0.92845 0.90689 0.77185 0.88096 0.88285 0.89865 0.90155 0.90194 0.90614 0.91535 0.91620 0.91021 0.90280 0.90204 0.92515 0.91957 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.59 27.68 -169.99 -4.70 16.88 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.26 6.61 56.52 0.37 -5.89 16 7 C -0.24 -6.54 9.53 -15.06 -0.14 -6.68 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.72 -15.97 4.98 -46.48 -0.23 -16.20 16 10 C 0.18 3.22 0.82 -131.00 -0.11 3.11 16 11 C 0.12 2.25 5.08 -4.04 -0.02 2.23 16 12 N -0.71 -11.94 5.44 -60.29 -0.33 -12.27 16 13 C 0.51 8.86 7.74 -10.99 -0.09 8.77 16 14 O -0.54 -11.57 15.56 -4.42 -0.07 -11.64 16 15 C -0.14 -1.81 5.44 -27.89 -0.15 -1.97 16 16 C 0.10 1.28 2.91 -25.70 -0.07 1.20 16 17 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 18 C -0.15 -1.36 6.58 -24.42 -0.16 -1.52 16 19 C -0.16 -1.33 7.02 -24.72 -0.17 -1.50 16 20 C 0.05 0.55 7.80 37.88 0.30 0.85 16 21 O -0.36 -5.84 10.50 -45.20 -0.47 -6.32 16 22 C -0.15 -2.49 7.28 -25.91 -0.19 -2.68 16 23 C -0.13 -1.90 7.99 -25.92 -0.21 -2.11 16 24 C -0.15 -2.08 6.98 -25.92 -0.18 -2.26 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.36 7.83 5.80 -40.82 -0.24 7.59 16 27 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 28 H 0.07 1.71 7.80 -51.93 -0.41 1.31 16 29 H 0.40 5.81 8.23 -40.82 -0.34 5.48 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 39 H 0.08 1.54 7.87 -51.93 -0.41 1.13 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -34.34 347.20 -8.38 -42.71 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.28 Total: 12.36 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.29 Total: -2.40 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.22 Total: -56.84 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.54 Total: -17.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.70 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.34 -8.38 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754978040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.990 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds