Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47284 * 269.99967 * 3 2 1 5 5 H 1.48502 * 109.47599 * 30.00014 * 3 2 1 6 6 H 1.48508 * 109.46956 * 149.99816 * 3 2 1 7 7 C 1.38812 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99846 * 175.03768 * 9 7 2 11 11 C 1.52999 * 112.85490 * 54.19650 * 10 9 7 12 12 N 1.46507 * 109.46846 * 65.99196 * 11 10 9 13 13 C 1.34777 * 119.99833 * 184.97055 * 12 11 10 14 14 O 1.21278 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99784 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46911 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.82491 * 305.57501 * 16 15 13 18 18 C 1.54380 * 109.83047 * 184.58996 * 16 15 13 19 19 C 1.55301 * 102.25085 * 219.13399 * 18 16 15 20 20 C 1.54946 * 100.94700 * 34.13322 * 19 18 16 21 21 O 1.43246 * 109.82782 * 66.45715 * 16 15 13 22 22 C 1.53787 * 113.61499 * 185.39395 * 10 9 7 23 23 C 1.53777 * 87.08031 * 89.19834 * 22 10 9 24 24 C 1.53779 * 87.08182 * 25.43538 * 23 22 10 25 25 H 0.97004 * 119.99745 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99847 * 355.03566 * 9 7 2 27 27 H 1.08997 * 109.47799 * 185.99101 * 11 10 9 28 28 H 1.09004 * 109.47038 * 306.00015 * 11 10 9 29 29 H 0.96996 * 119.99689 * 4.97476 * 12 11 10 30 30 H 1.08999 * 109.47037 * 300.00003 * 15 13 12 31 31 H 1.08996 * 109.46886 * 60.00833 * 15 13 12 32 32 H 1.09006 * 110.84348 * 337.32027 * 18 16 15 33 33 H 1.08994 * 110.84822 * 100.94127 * 18 16 15 34 34 H 1.08996 * 111.12432 * 276.21138 * 19 18 16 35 35 H 1.09000 * 111.16001 * 152.06915 * 19 18 16 36 36 H 1.08997 * 110.31213 * 204.64397 * 20 19 18 37 37 H 1.08995 * 110.30954 * 82.46563 * 20 19 18 38 38 H 1.09002 * 113.60957 * 334.65180 * 22 10 9 39 39 H 1.08994 * 113.69307 * 203.75971 * 22 10 9 40 40 H 1.09000 * 113.61606 * 139.98468 * 23 22 10 41 41 H 1.09006 * 113.61590 * 270.88504 * 23 22 10 42 42 H 1.08997 * 113.61434 * 89.11810 * 24 23 22 43 43 H 1.09002 * 113.61306 * 220.01609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0540 -3.6543 -0.1108 11 6 3.1485 -3.8044 0.9477 12 7 2.5350 -3.8932 2.2752 13 6 3.3123 -3.9296 3.3756 14 8 4.5195 -3.8883 3.2670 15 6 2.6812 -4.0203 4.7411 16 6 3.7770 -4.0464 5.8086 17 1 4.4812 -4.8507 5.5959 18 6 3.1459 -4.2551 7.2020 19 6 4.0007 -3.3150 8.0950 20 6 4.2948 -2.1580 7.1073 21 8 4.4656 -2.7905 5.8290 22 6 1.1378 -4.8838 -0.2282 23 6 1.1768 -4.6696 -1.7505 24 6 2.5302 -3.9709 -1.5384 25 1 -0.4850 0.8401 -0.0004 26 1 0.3583 -2.3896 0.0725 27 1 3.7222 -4.7101 0.7513 28 1 3.8108 -2.9395 0.9107 29 1 1.5695 -3.9259 2.3620 30 1 2.0373 -3.1557 4.9020 31 1 2.0882 -4.9324 4.8074 32 1 2.1003 -3.9473 7.2042 33 1 3.2469 -5.2920 7.5222 34 1 4.9216 -3.8045 8.4120 35 1 3.4302 -2.9626 8.9543 36 1 5.2073 -1.6366 7.3963 37 1 3.4549 -1.4640 7.0767 38 1 0.1501 -4.7355 0.2084 39 1 1.6079 -5.8128 0.0942 40 1 1.2483 -5.5962 -2.3201 41 1 0.3951 -4.0049 -2.1182 42 1 3.3823 -4.6496 -1.5740 43 1 2.6666 -3.0857 -2.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754978041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = -58.275529 kcal Electronic energy + Delta-G solvation = -22891.097314 eV Core-core repulsion = 19550.903088 eV Total energy + Delta-G solvation = -3340.194226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88267 -39.07379 -38.06235 -33.75712 -33.22393 -32.35526 -31.62104 -29.99944 -27.77220 -25.97499 -25.20264 -23.83257 -22.17152 -21.68017 -21.06854 -19.74234 -18.17463 -17.19388 -17.06204 -16.52176 -15.98667 -15.39438 -15.10045 -14.71408 -14.38573 -14.13144 -13.91387 -13.48355 -13.40981 -13.14740 -12.78868 -12.63709 -12.14860 -11.83097 -11.81251 -11.55699 -11.34918 -11.21131 -11.15929 -11.01503 -10.95352 -10.79745 -10.36806 -10.19158 -10.02603 -9.64060 -9.45765 -9.43069 -9.29015 -8.85012 -8.36265 -7.01034 -5.79860 -3.09102 3.19074 3.44312 3.50289 3.53492 3.69793 3.91875 4.36209 4.57329 4.65362 4.79028 5.05455 5.11804 5.18553 5.21258 5.28551 5.32759 5.41621 5.49715 5.52355 5.54761 5.58648 5.62916 5.69217 5.76679 5.81460 5.89360 6.10416 6.15032 6.15962 6.22392 6.34376 6.42626 6.58780 6.77888 6.95163 7.02912 7.15542 7.16707 7.74624 8.12278 8.38799 8.81760 9.50627 10.03789 10.39065 11.42249 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.005091 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.388412 B = 5499.104216 C = 6886.455542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.071 0.929 9 N -0.698 5.698 10 C 0.175 3.825 11 C 0.125 3.875 12 N -0.709 5.709 13 C 0.511 3.489 14 O -0.542 6.542 15 C -0.154 4.154 16 C 0.099 3.901 17 H 0.085 0.915 18 C -0.153 4.153 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.358 6.358 22 C -0.145 4.145 23 C -0.130 4.130 24 C -0.156 4.156 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.398 0.602 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -11.679 11.707 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.082 3.918 11 C -0.001 4.001 12 N -0.358 5.358 13 C 0.296 3.704 14 O -0.420 6.420 15 C -0.195 4.195 16 C 0.041 3.959 17 H 0.103 0.897 18 C -0.190 4.190 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.277 6.277 22 C -0.183 4.183 23 C -0.167 4.167 24 C -0.197 4.197 25 H 0.064 0.936 26 H 0.221 0.779 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.406 -11.390 11.440 16.499 hybrid contribution -0.563 1.007 0.159 1.165 sum 2.843 -10.382 11.599 15.825 Atomic orbital electron populations 1.69658 1.05052 1.25667 1.57736 1.24697 0.95448 0.97588 1.02774 0.86242 0.78923 0.83897 0.77538 1.21690 1.21839 1.20620 1.19131 0.91100 0.83645 1.42467 0.91117 1.42066 1.05799 0.98962 1.87016 1.20797 0.91606 0.87353 0.92042 1.21689 0.96345 1.00469 0.81605 1.45757 1.10092 1.73966 1.06033 1.20359 0.87466 0.76568 0.85979 1.90680 1.14389 1.49807 1.87101 1.22122 0.99484 1.04480 0.93376 1.22443 0.92846 0.87844 0.92808 0.89681 1.23218 1.00404 1.00916 0.94502 1.23257 1.00563 0.96848 0.98681 1.23406 1.01379 0.95179 0.83307 1.88663 1.73239 1.33094 1.32718 1.23182 1.00024 0.97962 0.97143 1.22639 0.98851 0.99539 0.95687 1.23440 0.95989 1.00292 0.99974 0.93564 0.77910 0.93035 0.91266 0.76813 0.88495 0.88429 0.90224 0.89982 0.90471 0.90104 0.89968 0.92351 0.91729 0.90468 0.92788 0.90111 0.91473 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.25 9.44 -15.06 -0.14 -6.40 16 8 H 0.07 1.94 6.92 -52.48 -0.36 1.57 16 9 N -0.70 -16.31 5.23 -46.48 -0.24 -16.56 16 10 C 0.18 3.29 0.83 -131.01 -0.11 3.18 16 11 C 0.12 2.37 4.90 -4.04 -0.02 2.35 16 12 N -0.71 -12.31 5.45 -60.29 -0.33 -12.64 16 13 C 0.51 9.07 7.72 -10.98 -0.08 8.99 16 14 O -0.54 -11.75 15.48 -6.90 -0.11 -11.86 16 15 C -0.15 -2.02 5.27 -27.88 -0.15 -2.17 16 16 C 0.10 1.29 3.04 -26.01 -0.08 1.21 16 17 H 0.09 1.17 7.95 -51.93 -0.41 0.75 16 18 C -0.15 -1.37 6.54 -24.79 -0.16 -1.53 16 19 C -0.16 -1.36 7.15 -24.48 -0.18 -1.53 16 20 C 0.04 0.51 7.78 38.18 0.30 0.81 16 21 O -0.36 -5.78 10.36 -47.69 -0.49 -6.28 16 22 C -0.15 -2.23 7.04 -25.92 -0.18 -2.42 16 23 C -0.13 -2.05 7.99 -25.92 -0.21 -2.26 16 24 C -0.16 -2.75 7.40 -25.92 -0.19 -2.94 16 25 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 26 H 0.39 9.59 7.83 -40.82 -0.32 9.27 16 27 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.07 1.56 7.00 -51.93 -0.36 1.20 16 29 H 0.40 6.31 8.29 -40.82 -0.34 5.97 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -32.67 348.94 -8.76 -41.43 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.24 Total: 12.70 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.30 Total: -3.07 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.15 Total: -55.85 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.60 Total: -18.14 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.67 -8.76 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754978041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.850 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds