Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.84921 * 314.67062 * 11 10 9 13 13 C 1.53783 * 113.61484 * 85.86229 * 11 10 9 14 14 C 1.53949 * 87.02260 * 139.95122 * 13 11 10 15 15 H 1.08995 * 113.74414 * 220.05500 * 14 13 11 16 16 N 1.46502 * 113.53341 * 89.18777 * 14 13 11 17 17 C 1.34773 * 119.99935 * 107.50937 * 16 14 13 18 18 O 1.21287 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.50708 * 120.00180 * 179.97438 * 17 16 14 20 20 C 1.53000 * 109.47275 * 179.97438 * 19 17 16 21 21 O 1.42904 * 112.84700 * 53.80171 * 20 19 17 22 22 C 1.53781 * 113.61354 * 282.49958 * 20 19 17 23 23 C 1.53779 * 87.07800 * 220.01822 * 22 20 19 24 24 C 1.53774 * 113.61533 * 185.00033 * 20 19 17 25 25 C 1.53784 * 113.61432 * 183.46790 * 11 10 9 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.09004 * 113.61528 * 254.53262 * 13 11 10 31 31 H 1.09003 * 113.61718 * 25.42972 * 13 11 10 32 32 H 0.97001 * 120.00155 * 287.50308 * 16 14 13 33 33 H 1.09003 * 109.46698 * 299.99523 * 19 17 16 34 34 H 1.08996 * 109.46592 * 59.99634 * 19 17 16 35 35 H 0.96695 * 114.00297 * 309.66320 * 21 20 19 36 36 H 1.08999 * 113.61556 * 334.56358 * 22 20 19 37 37 H 1.08997 * 113.61853 * 105.46990 * 22 20 19 38 38 H 1.08998 * 113.61552 * 270.87823 * 23 22 20 39 39 H 1.08999 * 113.68947 * 139.99083 * 23 22 20 40 40 H 1.09000 * 113.61174 * 254.53073 * 24 20 19 41 41 H 1.09000 * 113.61271 * 25.42759 * 24 20 19 42 42 H 1.08993 * 113.61774 * 334.56765 * 25 11 10 43 43 H 1.08994 * 113.60975 * 105.38974 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.2517 -4.6827 0.7118 13 6 0.5867 -5.2216 -1.4079 14 6 0.6864 -6.6836 -0.9363 15 1 1.0897 -7.3610 -1.6889 16 7 -0.5450 -7.1851 -0.3210 17 6 -1.3150 -8.0728 -0.9809 18 8 -0.9887 -8.4561 -2.0844 19 6 -2.5814 -8.5891 -0.3477 20 6 -3.2621 -9.5751 -1.2992 21 8 -2.3927 -10.6270 -1.7233 22 6 -4.0182 -8.8955 -2.4531 23 6 -5.1153 -9.9544 -2.2533 24 6 -4.6294 -10.0698 -0.7989 25 6 1.7324 -6.2019 0.0829 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 -0.4313 -4.9023 -1.6314 31 1 1.2937 -4.9684 -2.1980 32 1 -0.8061 -6.8782 0.5614 33 1 -2.3402 -9.0940 0.5877 34 1 -3.2537 -7.7548 -0.1476 35 1 -1.5400 -10.3206 -2.0609 36 1 -4.3439 -7.8808 -2.2240 37 1 -3.5084 -8.9708 -3.4135 38 1 -4.9595 -10.8604 -2.8390 39 1 -6.1270 -9.5596 -2.3456 40 1 -4.6129 -11.0932 -0.4240 41 1 -5.1221 -9.3762 -0.1176 42 1 2.7532 -6.2174 -0.2987 43 1 1.6392 -6.6724 1.0617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755471695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -40.615709 kcal Electronic energy + Delta-G solvation = -22097.249692 eV Core-core repulsion = 18757.821254 eV Total energy + Delta-G solvation = -3339.428439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81832 -39.57928 -38.10373 -34.90704 -34.60175 -33.41844 -31.08567 -30.22398 -26.61660 -25.98610 -25.62836 -24.02632 -23.11341 -21.70089 -20.99269 -19.87750 -19.18938 -17.42233 -17.23155 -16.74698 -16.07073 -15.87535 -15.31849 -15.13864 -14.92830 -14.64355 -13.96269 -13.76804 -13.58665 -13.27201 -13.18708 -12.97346 -12.59284 -12.47930 -12.28356 -11.85520 -11.73875 -11.45631 -11.10428 -10.78421 -10.75455 -10.69566 -10.57618 -10.36491 -10.07489 -9.97386 -9.90723 -9.88279 -9.21315 -9.10833 -8.87218 -7.00346 -6.11520 -3.10553 2.32936 2.89347 3.50725 3.54444 3.71874 3.85497 4.21778 4.30829 4.38372 4.54580 4.58217 4.60043 4.73131 4.83903 4.97471 5.00062 5.02251 5.13576 5.35092 5.39387 5.49493 5.58807 5.61318 5.65892 5.73956 5.82012 5.84707 5.85258 5.95465 5.99021 6.08491 6.10584 6.14531 6.25821 6.49831 6.67092 6.81287 7.25413 7.56300 7.79905 8.00117 8.75056 9.23009 10.09383 10.24612 11.37204 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.002801 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.869582 B = 9993.598386 C =10577.117072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.743 5.743 10 C 0.168 3.832 11 C -0.116 4.116 12 H 0.085 0.915 13 C -0.138 4.138 14 C 0.114 3.886 15 H 0.101 0.899 16 N -0.706 5.706 17 C 0.520 3.480 18 O -0.545 6.545 19 C -0.165 4.165 20 C 0.129 3.871 21 O -0.549 6.549 22 C -0.162 4.162 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.137 4.137 26 H 0.254 0.746 27 H 0.366 0.634 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.389 0.611 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -20.916 0.229 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.389 5.389 10 C 0.040 3.960 11 C -0.135 4.135 12 H 0.104 0.896 13 C -0.177 4.177 14 C 0.009 3.991 15 H 0.119 0.881 16 N -0.356 5.356 17 C 0.307 3.693 18 O -0.424 6.424 19 C -0.206 4.206 20 C 0.087 3.913 21 O -0.362 6.362 22 C -0.200 4.200 23 C -0.173 4.173 24 C -0.166 4.166 25 C -0.176 4.176 26 H 0.065 0.935 27 H 0.199 0.801 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.244 0.756 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.649 -19.879 -0.380 20.965 hybrid contribution 0.332 -0.989 0.356 1.103 sum -6.317 -20.869 -0.025 21.804 Atomic orbital electron populations 1.70890 1.06028 1.28312 1.53817 1.25791 0.97075 1.01023 1.00525 0.83238 0.74214 0.75579 0.75866 1.21010 1.22273 1.22259 1.20046 0.92024 0.85927 1.48231 0.91829 1.42345 1.04826 1.00994 1.90703 1.20567 0.92891 0.84693 0.97810 1.22782 0.99022 0.94499 0.97159 0.89633 1.23434 1.02302 0.94198 0.97746 1.22008 0.84664 0.95848 0.96578 0.88108 1.45744 1.24112 1.44594 1.21127 1.20671 0.84877 0.78213 0.85526 1.90550 1.72884 1.58898 1.20080 1.22387 0.95708 1.01167 1.01304 1.21788 0.89220 0.87111 0.93219 1.86327 1.31945 1.33275 1.84620 1.23579 0.97655 0.98542 1.00196 1.22742 0.98373 0.99699 0.96463 1.23064 0.93502 1.02487 0.97510 1.23295 0.98814 0.96429 0.99016 0.93497 0.80105 0.96109 0.96335 0.91441 0.89056 0.76261 0.87982 0.87540 0.75565 0.89730 0.90541 0.89858 0.91349 0.90506 0.88836 0.88620 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 3 Si 1.08 26.07 29.92 -169.99 -5.09 20.98 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.74 -18.83 5.60 -59.91 -0.34 -19.17 16 10 C 0.17 3.34 6.08 -4.05 -0.02 3.31 16 11 C -0.12 -1.73 3.62 -89.80 -0.33 -2.06 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.14 -1.99 7.44 -25.83 -0.19 -2.18 16 14 C 0.11 1.36 4.33 -67.03 -0.29 1.06 16 15 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 16 N -0.71 -7.18 5.26 -52.93 -0.28 -7.46 16 17 C 0.52 5.67 7.59 -10.98 -0.08 5.59 16 18 O -0.55 -7.57 13.19 -14.27 -0.19 -7.76 16 19 C -0.17 -1.35 5.34 -27.88 -0.15 -1.50 16 20 C 0.13 1.25 1.10 -89.81 -0.10 1.15 16 21 O -0.55 -6.60 13.39 -55.05 -0.74 -7.34 16 22 C -0.16 -1.58 7.17 -25.92 -0.19 -1.77 16 23 C -0.14 -1.14 8.02 -25.92 -0.21 -1.35 16 24 C -0.13 -1.02 7.47 -25.92 -0.19 -1.21 16 25 C -0.14 -1.58 7.39 -25.91 -0.19 -1.77 16 26 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 27 H 0.37 9.44 6.50 -40.82 -0.27 9.17 16 28 H 0.02 0.43 7.88 -51.93 -0.41 0.02 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.37 7.92 -51.93 -0.41 0.96 16 32 H 0.40 3.28 8.70 -40.82 -0.36 2.93 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.39 4.72 6.19 45.56 0.28 5.01 16 36 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -33.75 348.25 -9.32 -43.07 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.51 Total: 12.88 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.19 Total: -11.82 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.15 Total: -55.26 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.93 Total: -15.10 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.09 Total: 20.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.75 -9.32 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755471695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.450 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds