Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48494 * 109.47414 * 269.99881 * 3 2 1 5 5 H 1.48503 * 109.46769 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99906 * 3 2 1 7 7 C 1.38818 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99403 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00400 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00364 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46651 * 35.00406 * 10 9 7 12 12 C 1.52993 * 109.47190 * 275.00506 * 10 9 7 13 13 O 1.42903 * 109.47440 * 294.99770 * 12 10 9 14 14 C 1.53000 * 109.47236 * 155.00183 * 10 9 7 15 15 N 1.46504 * 109.46897 * 305.00333 * 14 10 9 16 16 C 1.34783 * 119.99359 * 180.02562 * 15 14 10 17 17 O 1.21271 * 120.00229 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99388 * 179.97438 * 16 15 14 19 19 C 1.51847 * 108.64829 * 55.90925 * 18 16 15 20 20 C 1.53075 * 110.74326 * 187.60196 * 19 18 16 21 21 C 1.51374 * 108.61284 * 274.26135 * 20 19 18 22 22 C 1.29524 * 120.35881 * 71.88592 * 21 20 19 23 23 C 1.51367 * 120.36154 * 0.02562 * 22 21 20 24 24 C 1.51852 * 108.64739 * 179.97438 * 18 16 15 25 25 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00044 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47497 * 54.99852 * 12 10 9 28 28 H 1.09003 * 109.47402 * 174.99643 * 12 10 9 29 29 H 0.96698 * 114.00234 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47118 * 185.00604 * 14 10 9 31 31 H 1.08997 * 109.46967 * 65.00204 * 14 10 9 32 32 H 0.96998 * 120.00265 * 359.97438 * 15 14 10 33 33 H 1.08997 * 108.60555 * 298.01591 * 18 16 15 34 34 H 1.08995 * 109.22433 * 307.92087 * 19 18 16 35 35 H 1.09000 * 109.22334 * 67.27131 * 19 18 16 36 36 H 1.08998 * 109.62653 * 154.51831 * 20 19 18 37 37 H 1.08994 * 109.60221 * 33.99306 * 20 19 18 38 38 H 1.08003 * 119.81809 * 252.15884 * 21 20 19 39 39 H 1.07998 * 119.81554 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.61525 * 47.81560 * 23 22 21 41 41 H 1.09001 * 109.61394 * 168.16738 * 23 22 21 42 42 H 1.09000 * 109.21815 * 52.07774 * 24 18 16 43 43 H 1.08999 * 109.18649 * 292.70562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5645 -3.2066 -0.5891 12 6 4.2587 -2.9752 1.4370 13 8 5.0751 -2.0673 2.1795 14 6 5.4991 -2.2590 -0.6102 15 7 5.3610 -1.6641 -1.9418 16 6 6.4587 -1.3871 -2.6732 17 8 7.5606 -1.6299 -2.2287 18 6 6.3167 -0.7757 -4.0432 19 6 5.5145 0.5078 -3.9213 20 6 5.1798 1.0714 -5.3047 21 6 6.3392 1.9250 -5.7721 22 6 7.4542 1.3736 -6.1333 23 6 7.6118 -0.1313 -6.0932 24 6 7.7023 -0.5736 -4.6308 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.2745 -3.0415 1.9010 28 1 4.7244 -3.9607 1.4306 29 1 5.2115 -2.3249 3.1015 30 1 6.0104 -3.2182 -0.6920 31 1 6.0784 -1.5916 0.0277 32 1 4.4796 -1.4703 -2.2975 33 1 5.7662 -1.4696 -4.6784 34 1 4.5887 0.3027 -3.3839 35 1 6.0961 1.2431 -3.3653 36 1 4.2782 1.6808 -5.2433 37 1 5.0232 0.2514 -6.0055 38 1 6.2377 2.9998 -5.8003 39 1 8.2756 1.9910 -6.4657 40 1 6.7497 -0.6022 -6.5655 41 1 8.5208 -0.4183 -6.6219 42 1 8.2565 -1.5104 -4.5732 43 1 8.2271 0.1897 -4.0564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755645889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = -72.571808 kcal Electronic energy + Delta-G solvation = -23052.439766 eV Core-core repulsion = 19711.625607 eV Total energy + Delta-G solvation = -3340.814159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10339 -38.01549 -37.13485 -35.03010 -33.63297 -32.73942 -31.87753 -31.37357 -28.91743 -26.40448 -24.82427 -23.91548 -23.27597 -21.34067 -20.18975 -19.55899 -18.09031 -18.00418 -16.96379 -16.88915 -16.29210 -15.69948 -15.21368 -14.63142 -14.42861 -14.23654 -13.70456 -13.49670 -13.49257 -13.14898 -12.98437 -12.88468 -12.74845 -12.31953 -12.13509 -11.74378 -11.56871 -11.32862 -11.02247 -10.90131 -10.79044 -10.73120 -10.62758 -10.36555 -10.12875 -9.67533 -9.57815 -9.45337 -9.06487 -9.01903 -8.66599 -7.37349 -5.85490 -3.21785 2.22398 2.90233 3.32572 3.41771 3.43040 3.52122 4.53359 4.54451 4.74549 4.78238 4.82487 4.97856 5.04864 5.12241 5.19267 5.33516 5.36634 5.44531 5.45424 5.48616 5.60285 5.73068 5.75612 5.82250 5.90625 5.92317 5.94590 6.09919 6.10354 6.20372 6.23809 6.33035 6.37563 6.59203 6.61361 6.82740 6.84165 7.87009 7.88157 8.09998 8.33414 8.52851 9.11553 9.84175 10.04519 11.32172 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.005623 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.272047 B = 4978.792025 C = 6344.443871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.074 0.926 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.718 5.718 16 C 0.510 3.490 17 O -0.552 6.552 18 C -0.102 4.102 19 C -0.111 4.111 20 C -0.091 4.091 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.091 4.091 24 C -0.093 4.093 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.366 0.634 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -2.030 -9.401 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.381 5.381 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.368 6.368 14 C -0.010 4.010 15 N -0.370 5.370 16 C 0.296 3.704 17 O -0.431 6.431 18 C -0.123 4.123 19 C -0.149 4.149 20 C -0.128 4.128 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.128 4.128 24 C -0.131 4.131 25 H 0.070 0.930 26 H 0.199 0.801 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.211 0.789 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.151 -1.963 -9.652 16.431 hybrid contribution -0.035 1.084 0.614 1.246 sum 13.116 -0.880 -9.038 15.953 Atomic orbital electron populations 1.69693 1.05136 1.25966 1.56968 1.24627 0.95127 0.97154 1.01600 0.86635 0.79595 0.84996 0.77948 1.20890 1.21794 1.19980 1.19048 0.80439 0.94693 1.43815 0.89178 1.42733 1.03842 1.01807 1.89731 1.20569 0.90557 0.90571 0.92228 0.90804 1.22996 0.93801 0.90403 0.95008 1.86528 1.72350 1.51988 1.25962 1.21581 0.98210 0.98317 0.82850 1.46094 1.09604 1.63269 1.18010 1.20708 0.84383 0.78118 0.87189 1.90652 1.25970 1.53867 1.72582 1.21010 0.98778 0.98292 0.94247 1.21340 1.00202 0.95851 0.97492 1.20823 0.96871 0.98934 0.96169 1.22585 0.95591 0.99431 0.99780 1.22542 0.97754 0.96496 1.01068 1.20836 1.02145 0.93197 0.96660 1.21079 0.94984 1.02530 0.94502 0.92980 0.80087 0.92811 0.95147 0.78903 0.91832 0.90743 0.75525 0.88918 0.90503 0.91233 0.90916 0.90766 0.87646 0.87729 0.91012 0.91385 0.90840 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.97 55.49 0.78 -27.34 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.27 -6.67 6.52 56.52 0.37 -6.30 16 7 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 9 N -0.74 -16.39 4.31 -53.43 -0.23 -16.62 16 10 C 0.17 3.09 2.84 -67.93 -0.19 2.90 16 11 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 12 C 0.06 0.98 6.85 37.15 0.25 1.23 16 13 O -0.56 -9.54 12.64 -35.23 -0.45 -9.99 16 14 C 0.11 1.94 5.12 -4.04 -0.02 1.92 16 15 N -0.72 -11.52 5.19 -60.29 -0.31 -11.83 16 16 C 0.51 8.14 7.14 -10.98 -0.08 8.07 16 17 O -0.55 -10.53 15.76 5.57 0.09 -10.44 16 18 C -0.10 -1.28 2.06 -92.94 -0.19 -1.47 16 19 C -0.11 -1.41 4.87 -27.28 -0.13 -1.55 16 20 C -0.09 -0.99 5.62 -27.51 -0.15 -1.15 16 21 C -0.16 -1.63 9.34 -35.28 -0.33 -1.96 16 22 C -0.16 -1.60 9.34 -35.29 -0.33 -1.93 16 23 C -0.09 -0.88 5.62 -27.53 -0.15 -1.03 16 24 C -0.09 -1.10 4.30 -27.29 -0.12 -1.22 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.37 8.46 5.66 -40.82 -0.23 8.23 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.37 4.40 9.12 45.56 0.42 4.81 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.42 7.39 -51.93 -0.38 1.03 16 32 H 0.41 6.44 7.15 -40.82 -0.29 6.15 16 33 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 34 H 0.08 1.06 6.99 -51.93 -0.36 0.70 16 35 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.74 6.68 -51.93 -0.35 0.39 16 38 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.07 0.65 6.68 -51.93 -0.35 0.31 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 43 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.22 341.66 -7.54 -39.76 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -6.15 Total: 17.10 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.70 Total: -2.72 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.23 Total: -55.78 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.36 Total: -20.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.22 -7.54 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755645889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.809 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds