Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00025 * 2 1 4 4 C 1.50704 * 120.00149 * 180.02562 * 2 1 3 5 5 H 1.09008 * 109.98943 * 5.36709 * 4 2 1 6 6 O 1.43740 * 109.88084 * 126.44725 * 4 2 1 7 7 C 1.44386 * 106.97317 * 145.93715 * 6 4 2 8 8 C 1.54994 * 103.49169 * 319.94259 * 7 6 4 9 9 C 1.54094 * 109.88026 * 244.28525 * 4 2 1 10 10 H 1.09003 * 110.60037 * 357.27711 * 9 4 2 11 11 C 1.53001 * 110.48850 * 119.86774 * 9 4 2 12 12 N 1.46507 * 109.46919 * 181.22252 * 11 9 4 13 13 C 1.34777 * 120.00076 * 180.02562 * 12 11 9 14 14 O 1.21593 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34767 * 120.00348 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00210 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46987 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47155 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99593 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00315 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00198 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47220 * 90.00107 * 22 20 18 24 24 H 1.48498 * 109.47440 * 210.00337 * 22 20 18 25 25 H 1.48503 * 109.46938 * 330.00216 * 22 20 18 26 26 H 1.07996 * 119.99955 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.00213 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47221 * 239.99913 * 3 2 1 29 29 H 1.08995 * 109.47305 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47274 * 120.00560 * 3 2 1 31 31 H 1.08998 * 110.61222 * 78.44803 * 7 6 4 32 32 H 1.08995 * 110.61685 * 201.28199 * 7 6 4 33 33 H 1.09004 * 110.90489 * 155.21801 * 8 7 6 34 34 H 1.08995 * 110.91026 * 278.78756 * 8 7 6 35 35 H 1.08997 * 109.47323 * 301.21793 * 11 9 4 36 36 H 1.08999 * 109.47208 * 61.22442 * 11 9 4 37 37 H 0.97001 * 119.99847 * 359.97438 * 12 11 9 38 38 H 0.96999 * 120.00016 * 0.02562 * 15 13 12 39 39 H 1.08995 * 109.47081 * 300.00339 * 16 15 13 40 40 H 1.08999 * 109.46506 * 60.00604 * 16 15 13 41 41 H 1.08998 * 109.47727 * 300.00507 * 17 16 15 42 42 H 1.09007 * 109.47231 * 60.00623 * 17 16 15 43 43 H 0.97002 * 120.00643 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3666 -2.1378 -0.0968 6 8 3.0034 -1.3264 -1.0879 7 6 4.1556 -2.0691 -0.6347 8 6 4.3359 -1.5981 0.8309 9 6 2.8701 -1.4451 1.3050 10 1 2.7596 -0.5530 1.9215 11 6 2.4250 -2.6877 2.0787 12 7 3.1845 -2.7831 3.3279 13 6 2.9602 -3.8058 4.1766 14 8 2.1272 -4.6492 3.9056 15 7 3.6592 -3.8939 5.3255 16 6 3.4150 -5.0053 6.2482 17 6 4.3322 -4.8688 7.4651 18 6 4.0806 -6.0117 8.4146 19 1 3.3408 -6.7607 8.1738 20 6 4.7956 -6.1017 9.5900 21 7 5.6969 -5.1899 9.8829 22 14 4.4842 -7.5188 10.7665 23 1 5.3808 -8.6521 10.4247 24 1 4.7548 -7.0757 12.1578 25 1 3.0693 -7.9551 10.6523 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1335 0.0005 30 1 2.6902 1.3628 0.8900 31 1 3.9604 -3.1408 -0.6722 32 1 5.0326 -1.8189 -1.2314 33 1 4.8586 -2.3515 1.4202 34 1 4.8598 -0.6432 0.8709 35 1 1.3614 -2.6133 2.3050 36 1 2.6067 -3.5765 1.4744 37 1 3.8493 -2.1105 3.5439 38 1 4.3234 -3.2210 5.5418 39 1 2.3749 -4.9856 6.5735 40 1 3.6197 -5.9489 5.7425 41 1 5.3725 -4.8882 7.1401 42 1 4.1271 -3.9251 7.9707 43 1 6.1997 -5.2529 10.7100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280938745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -75.643850 kcal Electronic energy + Delta-G solvation = -21771.964530 eV Core-core repulsion = 18431.017157 eV Total energy + Delta-G solvation = -3340.947373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45626 -39.35188 -35.49942 -35.41570 -34.59483 -32.88747 -32.02324 -29.74674 -29.08488 -27.59669 -25.89186 -24.32011 -23.21233 -21.21541 -20.79409 -20.55748 -19.13828 -18.12487 -16.59896 -16.40875 -16.22573 -15.80625 -15.51066 -15.31437 -14.52047 -14.46972 -14.21411 -13.79700 -13.71648 -13.52232 -13.38116 -13.18084 -12.75694 -12.32075 -12.26846 -11.89965 -11.77243 -11.46327 -11.26808 -11.19186 -11.02879 -10.97103 -10.63312 -10.32063 -10.04692 -9.96850 -9.57335 -9.42824 -9.26352 -9.05367 -8.49008 -8.25758 -6.09604 -4.12211 1.80372 2.98776 3.29532 3.35688 3.40344 3.57706 3.65361 4.09771 4.26195 4.38835 4.44509 4.62980 4.68591 4.74320 4.83836 4.95006 5.03194 5.27211 5.27604 5.35403 5.41585 5.44784 5.50809 5.54689 5.58028 5.67671 5.71573 5.86694 6.24168 6.28833 6.39460 6.43714 6.55125 6.58136 6.77301 6.99037 7.21116 7.56271 7.62839 7.89630 8.25412 8.41920 8.92353 8.98597 9.52618 11.02100 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.002499 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.615880 B =11203.965333 C =11323.922231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.125 4.125 3 C -0.114 4.114 4 C 0.121 3.879 5 H 0.078 0.922 6 O -0.367 6.367 7 C 0.045 3.955 8 C -0.153 4.153 9 C -0.128 4.128 10 H 0.095 0.905 11 C 0.150 3.850 12 N -0.753 5.753 13 C 0.698 3.302 14 O -0.598 6.598 15 N -0.738 5.738 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.394 0.606 38 H 0.393 0.607 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 13.283 -20.751 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.125 4.125 3 C -0.171 4.171 4 C 0.063 3.937 5 H 0.096 0.904 6 O -0.286 6.286 7 C -0.031 4.031 8 C -0.191 4.191 9 C -0.147 4.147 10 H 0.113 0.887 11 C 0.025 3.975 12 N -0.410 5.410 13 C 0.398 3.602 14 O -0.477 6.477 15 N -0.392 5.392 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.227 0.773 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.370 12.607 -21.045 24.919 hybrid contribution 0.585 -0.193 1.172 1.324 sum -3.785 12.414 -19.873 23.735 Atomic orbital electron populations 1.23790 0.94920 1.02378 1.00611 1.21635 0.95106 0.95145 1.00645 1.20780 1.00229 0.93632 1.02461 1.21671 0.91156 0.95319 0.85542 0.90394 1.88920 1.28631 1.75172 1.35908 1.23580 0.89110 0.96201 0.94238 1.23249 0.95983 1.02927 0.96903 1.22812 0.95352 0.99492 0.97016 0.88713 1.21094 0.95897 0.96425 0.84108 1.45095 1.44924 1.29005 1.21985 1.16058 0.81903 0.81804 0.80469 1.90895 1.37692 1.42235 1.76851 1.45533 1.42435 1.30838 1.20368 1.21593 1.00478 0.86530 0.89675 1.19324 0.94374 0.98056 0.90693 1.21055 1.21562 1.09472 1.03836 0.92212 1.24994 0.94980 0.96344 0.97999 1.69953 1.24191 1.34392 1.24865 0.86507 0.78771 0.82246 0.80006 1.20558 1.21180 1.19710 0.87846 0.88162 0.91062 0.92085 0.91721 0.91860 0.88788 0.89421 0.90136 0.91444 0.91610 0.77255 0.77416 0.92785 0.92785 0.95991 0.95980 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 13.93 29.02 0.40 -0.99 16 2 C -0.13 -1.05 4.95 -101.07 -0.50 -1.55 16 3 C -0.11 -0.82 9.79 36.00 0.35 -0.47 16 4 C 0.12 1.08 3.30 -27.31 -0.09 0.99 16 5 H 0.08 0.71 7.37 -51.92 -0.38 0.32 16 6 O -0.37 -3.65 11.02 -35.23 -0.39 -4.03 16 7 C 0.05 0.35 7.72 38.21 0.29 0.65 16 8 C -0.15 -1.10 6.49 -24.72 -0.16 -1.26 16 9 C -0.13 -1.04 2.59 -89.09 -0.23 -1.27 16 10 H 0.09 0.73 6.96 -51.93 -0.36 0.37 16 11 C 0.15 1.62 4.81 -4.04 -0.02 1.60 16 12 N -0.75 -9.16 5.11 -65.22 -0.33 -9.50 16 13 C 0.70 12.11 8.57 -86.93 -0.74 11.36 16 14 O -0.60 -12.90 16.34 5.28 0.09 -12.81 16 15 N -0.74 -12.96 5.56 -65.23 -0.36 -13.32 16 16 C 0.14 3.02 5.61 -4.04 -0.02 2.99 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.10 0.67 7.83 -52.49 -0.41 0.26 16 27 H 0.10 0.73 7.86 -52.48 -0.41 0.32 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.38 7.78 -51.93 -0.40 -0.02 16 30 H 0.06 0.43 7.41 -51.93 -0.38 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.65 7.47 -51.93 -0.39 0.26 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.39 3.70 8.28 -40.82 -0.34 3.36 16 38 H 0.39 5.87 8.49 -40.82 -0.35 5.52 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -32.86 356.52 -8.38 -41.24 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.20 Total: 3.07 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.27 Total: -1.00 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.04 Total: -48.21 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.30 Total: -16.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.86 -8.38 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280938745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.403 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds