Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00025 * 2 1 4 4 C 1.50704 * 120.00149 * 180.02562 * 2 1 3 5 5 H 1.09008 * 109.98943 * 5.36709 * 4 2 1 6 6 O 1.43740 * 109.88084 * 126.44725 * 4 2 1 7 7 C 1.44386 * 106.97317 * 145.93715 * 6 4 2 8 8 C 1.54994 * 103.49169 * 319.94259 * 7 6 4 9 9 C 1.54094 * 109.88026 * 244.28525 * 4 2 1 10 10 H 1.09003 * 110.60037 * 357.27711 * 9 4 2 11 11 C 1.53001 * 110.48850 * 119.86774 * 9 4 2 12 12 N 1.46507 * 109.46919 * 181.22252 * 11 9 4 13 13 C 1.34777 * 120.00076 * 180.02562 * 12 11 9 14 14 O 1.21593 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34767 * 120.00348 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00210 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46987 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47155 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99593 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00315 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00198 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47220 * 90.00107 * 22 20 18 24 24 H 1.48498 * 109.47440 * 210.00337 * 22 20 18 25 25 H 1.48503 * 109.46938 * 330.00216 * 22 20 18 26 26 H 1.07996 * 119.99955 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.00213 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47221 * 239.99913 * 3 2 1 29 29 H 1.08995 * 109.47305 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47274 * 120.00560 * 3 2 1 31 31 H 1.08998 * 110.61222 * 78.44803 * 7 6 4 32 32 H 1.08995 * 110.61685 * 201.28199 * 7 6 4 33 33 H 1.09004 * 110.90489 * 155.21801 * 8 7 6 34 34 H 1.08995 * 110.91026 * 278.78756 * 8 7 6 35 35 H 1.08997 * 109.47323 * 301.21793 * 11 9 4 36 36 H 1.08999 * 109.47208 * 61.22442 * 11 9 4 37 37 H 0.97001 * 119.99847 * 359.97438 * 12 11 9 38 38 H 0.96999 * 120.00016 * 0.02562 * 15 13 12 39 39 H 1.08995 * 109.47081 * 300.00339 * 16 15 13 40 40 H 1.08999 * 109.46506 * 60.00604 * 16 15 13 41 41 H 1.08998 * 109.47727 * 300.00507 * 17 16 15 42 42 H 1.09007 * 109.47231 * 60.00623 * 17 16 15 43 43 H 0.97002 * 120.00643 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3666 -2.1378 -0.0968 6 8 3.0034 -1.3264 -1.0879 7 6 4.1556 -2.0691 -0.6347 8 6 4.3359 -1.5981 0.8309 9 6 2.8701 -1.4451 1.3050 10 1 2.7596 -0.5530 1.9215 11 6 2.4250 -2.6877 2.0787 12 7 3.1845 -2.7831 3.3279 13 6 2.9602 -3.8058 4.1766 14 8 2.1272 -4.6492 3.9056 15 7 3.6592 -3.8939 5.3255 16 6 3.4150 -5.0053 6.2482 17 6 4.3322 -4.8688 7.4651 18 6 4.0806 -6.0117 8.4146 19 1 3.3408 -6.7607 8.1738 20 6 4.7956 -6.1017 9.5900 21 7 5.6969 -5.1899 9.8829 22 14 4.4842 -7.5188 10.7665 23 1 5.3808 -8.6521 10.4247 24 1 4.7548 -7.0757 12.1578 25 1 3.0693 -7.9551 10.6523 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1335 0.0005 30 1 2.6902 1.3628 0.8900 31 1 3.9604 -3.1408 -0.6722 32 1 5.0326 -1.8189 -1.2314 33 1 4.8586 -2.3515 1.4202 34 1 4.8598 -0.6432 0.8709 35 1 1.3614 -2.6133 2.3050 36 1 2.6067 -3.5765 1.4744 37 1 3.8493 -2.1105 3.5439 38 1 4.3234 -3.2210 5.5418 39 1 2.3749 -4.9856 6.5735 40 1 3.6197 -5.9489 5.7425 41 1 5.3725 -4.8882 7.1401 42 1 4.1271 -3.9251 7.9707 43 1 6.1997 -5.2529 10.7100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280938745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -98.317793 kcal Electronic energy + Delta-G solvation = -21772.947746 eV Core-core repulsion = 18431.017157 eV Total energy + Delta-G solvation = -3341.930589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34641 -40.56164 -36.85509 -36.07682 -36.00930 -34.81732 -33.05112 -31.33203 -29.97013 -28.15825 -27.20743 -25.91130 -23.86465 -22.95707 -21.99312 -21.60464 -19.80784 -19.45377 -18.42065 -17.35646 -17.22980 -16.78768 -16.66006 -16.47173 -16.25344 -15.47296 -15.38047 -15.12976 -14.86592 -14.39179 -14.30435 -14.21437 -13.94236 -13.71330 -13.20800 -12.95712 -12.93843 -12.55934 -12.51886 -12.40835 -12.22898 -12.10855 -11.92446 -11.68531 -11.62793 -11.49762 -11.21302 -10.72277 -10.60114 -10.36348 -10.04086 -9.72714 -8.23626 -6.33672 1.18925 1.42524 1.42910 1.54247 1.74027 2.15964 2.41816 3.01464 3.11358 3.30284 3.46835 3.61663 3.80903 4.03394 4.06600 4.17358 4.26867 4.37915 4.47503 4.53007 4.61477 4.66780 4.79015 4.85089 4.85592 4.87638 4.92075 4.97453 5.06051 5.14212 5.19109 5.31665 5.45455 5.52296 5.60602 5.64780 5.79528 5.82771 5.94470 6.04199 6.18066 6.79624 7.12682 7.35710 7.59249 8.88299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.002499 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.615880 B =11203.965333 C =11323.922231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C -0.112 4.112 4 C 0.119 3.881 5 H 0.070 0.930 6 O -0.383 6.383 7 C 0.040 3.960 8 C -0.147 4.147 9 C -0.115 4.115 10 H 0.106 0.894 11 C 0.151 3.849 12 N -0.729 5.729 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.732 5.732 16 C 0.160 3.840 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.412 0.588 38 H 0.407 0.593 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 14.020 -20.947 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.139 4.139 3 C -0.169 4.169 4 C 0.061 3.939 5 H 0.088 0.912 6 O -0.303 6.303 7 C -0.036 4.036 8 C -0.184 4.184 9 C -0.134 4.134 10 H 0.124 0.876 11 C 0.027 3.973 12 N -0.386 5.386 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.387 5.387 16 C 0.036 3.964 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.191 1.191 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.248 0.752 38 H 0.243 0.757 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.080 13.401 -21.271 25.469 hybrid contribution 0.490 -0.390 1.158 1.316 sum -3.591 13.011 -20.113 24.222 Atomic orbital electron populations 1.23964 0.94945 1.03025 0.99893 1.21768 0.95430 0.95369 1.01326 1.20781 1.00353 0.93245 1.02497 1.21678 0.91102 0.95559 0.85567 0.91235 1.88908 1.29350 1.75456 1.36588 1.23722 0.89067 0.95895 0.94959 1.23240 0.95183 1.03728 0.96293 1.22694 0.95974 0.98269 0.96474 0.87581 1.21158 0.95277 0.97547 0.83354 1.44876 1.44750 1.27702 1.21304 1.16163 0.81251 0.82295 0.80594 1.90869 1.39535 1.44186 1.77745 1.45198 1.43055 1.30311 1.20127 1.21068 0.98835 0.87429 0.89073 1.19123 0.94186 0.96604 0.91397 1.21471 1.21758 1.10379 1.04882 0.92348 1.25853 0.94631 0.98949 0.99695 1.70050 1.24946 1.36056 1.25567 0.85456 0.78888 0.79016 0.77761 1.19757 1.20501 1.19125 0.86543 0.88285 0.91608 0.91157 0.91028 0.92301 0.87261 0.89410 0.88551 0.92425 0.92532 0.75169 0.75704 0.93942 0.93856 0.97213 0.97260 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 13.93 67.78 0.94 -1.65 16 2 C -0.14 -2.14 4.95 -16.48 -0.08 -2.23 16 3 C -0.11 -1.41 9.79 71.23 0.70 -0.71 16 4 C 0.12 2.00 3.30 30.22 0.10 2.10 16 5 H 0.07 1.26 7.37 -2.38 -0.02 1.24 16 6 O -0.38 -7.20 11.02 -148.98 -1.64 -8.85 16 7 C 0.04 0.56 7.72 72.66 0.56 1.12 16 8 C -0.15 -1.80 6.49 31.89 0.21 -1.59 16 9 C -0.12 -1.68 2.59 -9.80 -0.03 -1.71 16 10 H 0.11 1.36 6.96 -2.39 -0.02 1.35 16 11 C 0.15 3.13 4.81 86.38 0.42 3.54 16 12 N -0.73 -16.69 5.11 -478.52 -2.45 -19.14 16 13 C 0.70 23.72 8.57 179.06 1.53 25.25 16 14 O -0.64 -27.74 16.34 -4.01 -0.07 -27.81 16 15 N -0.73 -25.26 5.56 -478.54 -2.66 -27.92 16 16 C 0.16 6.95 5.61 86.38 0.48 7.44 16 17 C 0.02 1.23 5.09 29.85 0.15 1.38 16 18 C -0.55 -30.51 9.11 25.60 0.23 -30.27 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.03 13.29 21.44 0.28 -53.75 16 22 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H 0.12 1.32 7.83 -2.91 -0.02 1.30 16 27 H 0.10 1.40 7.86 -2.91 -0.02 1.37 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.74 7.78 -2.39 -0.02 0.72 16 30 H 0.07 0.78 7.41 -2.38 -0.02 0.76 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.10 7.47 -2.38 -0.02 1.08 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.41 6.73 8.28 -92.71 -0.77 5.96 16 38 H 0.41 11.69 8.49 -92.71 -0.79 10.90 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.01 0.47 8.14 -2.38 -0.02 0.46 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.88 356.52 0.63 -69.26 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.55 Total: 19.11 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.68 Total: 3.55 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.82 Total: -100.81 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.71 Total: -36.66 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.88 0.63 -69.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280938745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.060 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds