Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53001 * 109.47049 * 174.99763 * 3 2 1 5 5 C 1.53005 * 109.46852 * 185.00062 * 4 3 2 6 6 N 1.46500 * 109.47170 * 294.99688 * 3 2 1 7 7 C 1.46765 * 124.35123 * 119.72632 * 6 3 2 8 8 C 1.54660 * 105.38475 * 162.85569 * 7 6 3 9 9 H 1.09001 * 110.85231 * 143.78909 * 8 7 6 10 10 C 1.50695 * 111.19175 * 267.59487 * 8 7 6 11 11 O 1.21282 * 120.00184 * 353.85570 * 10 8 7 12 12 N 1.34773 * 119.99896 * 173.86150 * 10 8 7 13 13 C 1.46504 * 119.99934 * 179.97438 * 12 10 8 14 14 C 1.50705 * 109.46853 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00237 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99862 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00393 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00019 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47143 * 89.99852 * 18 16 14 20 20 H 1.48496 * 109.47043 * 210.00105 * 18 16 14 21 21 H 1.48503 * 109.47097 * 330.00244 * 18 16 14 22 22 C 1.54625 * 101.68129 * 25.76632 * 8 7 6 23 23 C 1.34418 * 124.35152 * 300.02760 * 6 3 2 24 24 O 1.21281 * 124.93696 * 0.42734 * 23 6 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 29 29 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 30 30 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 31 31 H 1.08995 * 109.47139 * 304.99688 * 4 3 2 32 32 H 1.08997 * 109.47230 * 65.00203 * 4 3 2 33 33 H 1.09004 * 109.46986 * 299.99593 * 5 4 3 34 34 H 1.08992 * 109.47402 * 59.99707 * 5 4 3 35 35 H 1.09000 * 109.46659 * 180.02562 * 5 4 3 36 36 H 1.09003 * 110.24544 * 281.98646 * 7 6 3 37 37 H 1.09004 * 110.24764 * 43.97869 * 7 6 3 38 38 H 0.97002 * 120.00511 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.47076 * 299.99705 * 13 12 10 40 40 H 1.08997 * 109.47100 * 60.00574 * 13 12 10 41 41 H 0.96997 * 120.00301 * 179.97438 * 17 16 14 42 42 H 1.09001 * 110.48461 * 216.30902 * 22 8 7 43 43 H 1.09008 * 110.48722 * 93.66830 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6526 2.0974 -1.2518 7 6 0.8030 3.2914 -1.3333 8 6 1.0296 3.8601 -2.7536 9 1 0.1064 4.2762 -3.1568 10 6 2.1297 4.8900 -2.7589 11 8 2.6283 5.2501 -1.7136 12 7 2.5594 5.4110 -3.9252 13 6 3.6285 6.4127 -3.9303 14 6 3.9190 6.8300 -5.3490 15 1 3.3633 6.3925 -6.1651 16 6 4.8951 7.7695 -5.6051 17 7 5.1484 8.1341 -6.8430 18 14 5.8569 8.5257 -4.1934 19 1 7.0658 7.7066 -3.9232 20 1 6.2655 9.9064 -4.5564 21 1 5.0040 8.5651 -2.9784 22 6 1.4531 2.5941 -3.5338 23 6 2.0247 1.6787 -2.4737 24 8 2.7175 0.7080 -2.6941 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.6054 1.9816 0.8418 31 1 3.8571 0.8801 1.0114 32 1 4.0030 0.9836 -0.7595 33 1 3.7723 3.4493 -0.6345 34 1 3.6264 3.3458 1.1364 35 1 5.1509 2.8863 0.3404 36 1 -0.2436 3.0198 -1.1953 37 1 1.1059 4.0218 -0.5830 38 1 2.1608 5.1228 -4.7613 39 1 3.3142 7.2824 -3.3533 40 1 4.5276 5.9867 -3.4852 41 1 5.8348 8.7953 -7.0231 42 1 2.2129 2.8396 -4.2758 43 1 0.5882 2.1325 -4.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331210891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -89.272155 kcal Electronic energy + Delta-G solvation = -23372.605576 eV Core-core repulsion = 20031.067235 eV Total energy + Delta-G solvation = -3341.538341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96937 -38.81355 -36.59438 -35.55874 -34.40069 -32.44864 -32.11994 -30.99452 -28.07142 -27.63323 -26.38338 -23.54708 -22.14070 -21.98040 -21.53479 -19.80089 -18.82312 -17.72736 -16.91322 -16.49888 -15.64174 -15.41650 -15.10535 -14.76025 -14.45399 -14.27099 -14.11670 -13.75156 -13.27601 -13.14694 -13.04890 -12.87051 -12.71808 -12.53539 -12.36779 -11.99322 -11.77049 -11.66780 -11.50686 -11.15811 -11.06652 -10.94134 -10.86071 -10.82471 -10.74486 -10.01062 -9.54048 -9.53499 -9.31144 -8.81621 -8.63759 -8.23838 -6.24575 -4.27318 2.65057 2.97838 3.04491 3.24443 3.31132 3.38264 3.76373 4.26291 4.30206 4.32827 4.65461 4.79958 4.86953 4.94139 5.08005 5.10862 5.19817 5.33182 5.36138 5.38881 5.41412 5.48966 5.58134 5.71021 5.74622 5.77426 5.81493 5.88765 5.96840 6.10075 6.12042 6.24716 6.56824 6.67695 6.74262 7.01400 7.12946 7.17605 7.33573 8.05910 8.24642 8.43624 8.69287 8.82185 9.35058 10.87329 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.004302 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.009786 B = 6507.135022 C = 6869.501854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.163 3.837 4 C -0.139 4.139 5 C -0.153 4.153 6 N -0.605 5.605 7 C 0.117 3.883 8 C -0.126 4.126 9 H 0.122 0.878 10 C 0.507 3.493 11 O -0.547 6.547 12 N -0.701 5.701 13 C 0.221 3.779 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.150 4.150 23 C 0.522 3.478 24 O -0.531 6.531 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.397 0.603 39 H 0.026 0.974 40 H 0.020 0.980 41 H 0.268 0.732 42 H 0.109 0.891 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -12.897 12.765 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.061 3.939 4 C -0.178 4.178 5 C -0.210 4.210 6 N -0.339 5.339 7 C -0.007 4.007 8 C -0.148 4.148 9 H 0.140 0.860 10 C 0.291 3.709 11 O -0.426 6.426 12 N -0.349 5.349 13 C 0.099 3.901 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.190 4.190 23 C 0.309 3.691 24 O -0.408 6.408 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.231 0.769 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.635 -13.024 13.336 21.462 hybrid contribution 0.349 0.484 0.121 0.609 sum -10.286 -12.540 13.457 21.075 Atomic orbital electron populations 1.21716 0.95678 1.01395 1.01608 1.21957 0.96216 0.96394 1.03426 1.21041 0.95082 0.92777 0.85033 1.21935 0.94663 0.98385 1.02783 1.21777 1.00416 0.95869 1.02956 1.48237 1.50510 1.29103 1.06031 1.22054 0.94291 0.87113 0.97220 1.22361 1.00198 0.95141 0.97130 0.86045 1.20091 0.83744 0.82421 0.84671 1.90643 1.58332 1.62002 1.31670 1.46157 1.38745 1.42366 1.07592 1.19506 0.85449 0.86766 0.98345 1.21078 1.21547 1.24890 0.90791 0.90198 1.24789 0.96279 0.95727 0.95740 1.69873 1.32380 1.31809 1.18755 0.86829 0.80987 0.78902 0.83031 1.19845 1.20870 1.18545 1.22416 1.03864 0.94485 0.98284 1.20705 0.79447 0.84683 0.84239 1.90681 1.38074 1.28184 1.83847 0.92775 0.92908 0.92958 0.91088 0.90227 0.89569 0.91443 0.90494 0.90876 0.93248 0.93238 0.90678 0.88456 0.76900 0.95610 0.96168 0.92215 0.87304 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.80 37.16 0.36 -0.88 16 2 C -0.14 -1.42 5.36 -26.73 -0.14 -1.56 16 3 C 0.16 1.81 2.26 -67.93 -0.15 1.65 16 4 C -0.14 -1.75 5.36 -26.73 -0.14 -1.89 16 5 C -0.15 -2.16 9.80 37.16 0.36 -1.80 16 6 N -0.60 -7.33 1.74 -164.73 -0.29 -7.61 16 7 C 0.12 1.23 6.69 -3.03 -0.02 1.21 16 8 C -0.13 -1.44 3.54 -90.05 -0.32 -1.76 16 9 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.51 8.60 7.16 -10.99 -0.08 8.52 16 11 O -0.55 -11.06 14.17 5.56 0.08 -10.98 16 12 N -0.70 -13.19 5.27 -61.47 -0.32 -13.52 16 13 C 0.22 5.25 4.50 -5.19 -0.02 5.23 16 14 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 18 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 22 C -0.15 -1.73 6.38 -26.75 -0.17 -1.90 16 23 C 0.52 7.43 7.37 -10.86 -0.08 7.35 16 24 O -0.53 -9.29 15.02 5.56 0.08 -9.20 16 25 H 0.05 0.49 7.75 -51.93 -0.40 0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.00 6.62 -51.93 -0.34 0.66 16 30 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.16 6.65 -51.93 -0.35 0.82 16 33 H 0.07 1.26 6.35 -51.93 -0.33 0.93 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.17 6.97 -51.93 -0.36 0.81 16 38 H 0.40 6.55 8.14 -40.82 -0.33 6.22 16 39 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 40 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 1.40 7.51 -51.93 -0.39 1.01 16 43 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -32.66 344.15 -7.07 -39.73 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.07 Total: 3.98 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.84 Total: 1.30 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.16 Total: -46.56 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.16 Total: -20.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.66 -7.07 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331210891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.545 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds