Wall clock time and date at job start Tue Mar 31 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 C 1.52999 * 109.46726 * 175.00127 * 3 2 1 5 5 C 1.53001 * 109.47109 * 185.00360 * 4 3 2 6 6 N 1.46493 * 109.47170 * 294.99985 * 3 2 1 7 7 C 1.46765 * 124.35316 * 120.00449 * 6 3 2 8 8 C 1.54831 * 105.49704 * 197.05968 * 7 6 3 9 9 H 1.08999 * 111.07622 * 216.48807 * 8 7 6 10 10 C 1.50698 * 111.01133 * 92.61336 * 8 7 6 11 11 O 1.21275 * 120.00527 * 6.33932 * 10 8 7 12 12 N 1.34777 * 119.99674 * 186.33343 * 10 8 7 13 13 C 1.46499 * 120.00190 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47395 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99699 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00346 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99736 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47274 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47179 * 120.00009 * 18 16 14 21 21 H 1.48505 * 109.47326 * 239.99834 * 18 16 14 22 22 C 1.54631 * 101.60220 * 334.56264 * 8 7 6 23 23 C 1.34418 * 124.35106 * 300.02753 * 6 3 2 24 24 O 1.21284 * 124.94191 * 359.53151 * 23 6 3 25 25 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46946 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.46614 * 60.00038 * 1 2 3 28 28 H 1.08998 * 109.46946 * 240.00123 * 2 1 3 29 29 H 1.09000 * 109.46614 * 119.99962 * 2 1 3 30 30 H 1.08997 * 109.47252 * 55.00160 * 3 2 1 31 31 H 1.09004 * 109.47022 * 304.99888 * 4 3 2 32 32 H 1.08992 * 109.47482 * 65.00100 * 4 3 2 33 33 H 1.09004 * 109.46793 * 299.99668 * 5 4 3 34 34 H 1.08997 * 109.47305 * 59.99075 * 5 4 3 35 35 H 1.09001 * 109.47255 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.23936 * 316.03618 * 7 6 3 37 37 H 1.08998 * 110.24401 * 77.94164 * 7 6 3 38 38 H 0.97005 * 119.99838 * 0.02562 * 12 10 8 39 39 H 1.08997 * 109.47626 * 300.00868 * 13 12 10 40 40 H 1.09003 * 109.46369 * 60.00624 * 13 12 10 41 41 H 0.96996 * 120.00177 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.48855 * 266.08223 * 22 8 7 43 43 H 1.08998 * 110.48570 * 143.57284 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0646 2.8849 0.2512 6 7 1.6525 2.0975 -1.2517 7 6 0.8077 3.2948 -1.3329 8 6 0.3172 3.3564 -2.8002 9 1 0.2602 4.3866 -3.1516 10 6 -1.0110 2.6615 -2.9555 11 8 -1.5994 2.2522 -1.9772 12 7 -1.5450 2.4949 -4.1817 13 6 -2.8359 1.8189 -4.3329 14 6 -3.2054 1.7623 -5.7928 15 1 -2.5446 2.1871 -6.5339 16 6 -4.3871 1.1683 -6.1821 17 7 -5.1921 0.6516 -5.2796 18 14 -4.8449 1.0976 -7.9918 19 1 -3.7783 1.7441 -8.7979 20 1 -4.9906 -0.3197 -8.4105 21 1 -6.1294 1.8115 -8.2059 22 6 1.4361 2.5822 -3.5349 23 6 2.0246 1.6788 -2.4737 24 8 2.7301 0.7171 -2.6934 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6055 1.9815 0.8418 31 1 3.8571 0.8800 1.0113 32 1 4.0030 0.9836 -0.7596 33 1 3.7724 3.4493 -0.6344 34 1 3.6264 3.3457 1.1365 35 1 5.1509 2.8863 0.3403 36 1 -0.0413 3.2039 -0.6554 37 1 1.3895 4.1841 -1.0904 38 1 -1.0742 2.8220 -4.9642 39 1 -2.7641 0.8059 -3.9370 40 1 -3.6006 2.3697 -3.7852 41 1 -6.0233 0.2334 -5.5536 42 1 2.1923 3.2708 -3.9119 43 1 1.0190 1.9914 -4.3504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331210892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:43 Heat of formation + Delta-G solvation = -93.176838 kcal Electronic energy + Delta-G solvation = -23301.289172 eV Core-core repulsion = 19959.581511 eV Total energy + Delta-G solvation = -3341.707661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88866 -38.66805 -36.54033 -35.46686 -34.26623 -32.42612 -32.06115 -30.87854 -27.66130 -27.37499 -26.27622 -23.62594 -22.12776 -21.94589 -21.72933 -19.61156 -18.75985 -17.61577 -16.85399 -16.21864 -15.44460 -15.35067 -15.03205 -14.67402 -14.46077 -14.16019 -14.15686 -13.68353 -13.27283 -13.05809 -12.98143 -12.68040 -12.58394 -12.42757 -12.03668 -11.80148 -11.62823 -11.60971 -11.42129 -11.10619 -10.98876 -10.93117 -10.88228 -10.79618 -10.68892 -10.34009 -9.48457 -9.41734 -9.13650 -8.77540 -8.57743 -7.95446 -6.19684 -4.26758 2.70013 3.04284 3.19406 3.22168 3.29457 3.32195 3.89653 4.32277 4.32636 4.40172 4.71284 4.86700 4.92007 4.99619 5.16274 5.17337 5.25280 5.38602 5.42246 5.45016 5.47772 5.55405 5.65794 5.76192 5.80877 5.83668 5.86922 5.94864 6.01855 6.15488 6.19188 6.31845 6.66968 6.73763 7.22717 7.25297 7.35358 7.46799 7.61746 7.93076 8.29846 8.54143 8.72539 9.00194 9.40044 10.90496 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.003940 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.075688 B = 7104.833867 C = 7337.136731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.163 3.837 4 C -0.141 4.141 5 C -0.146 4.146 6 N -0.604 5.604 7 C 0.116 3.884 8 C -0.127 4.127 9 H 0.120 0.880 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.708 5.708 13 C 0.250 3.750 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.150 4.150 23 C 0.522 3.478 24 O -0.532 6.532 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.265 0.735 42 H 0.110 0.890 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.713 6.822 9.172 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.061 3.939 4 C -0.180 4.180 5 C -0.204 4.204 6 N -0.338 5.338 7 C -0.007 4.007 8 C -0.149 4.149 9 H 0.138 0.862 10 C 0.288 3.712 11 O -0.424 6.424 12 N -0.356 5.356 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.190 4.190 23 C 0.310 3.690 24 O -0.410 6.410 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.459 5.873 9.844 19.245 hybrid contribution -0.271 0.153 -1.361 1.396 sum 15.188 6.026 8.482 18.410 Atomic orbital electron populations 1.21776 0.94495 1.01639 1.03099 1.21938 0.97163 0.95760 1.02892 1.21040 0.94259 0.93594 0.85056 1.21953 0.95137 0.97673 1.03200 1.21714 1.00551 0.96588 1.01531 1.48222 1.50637 1.28868 1.06028 1.22077 0.94862 0.87203 0.96565 1.22415 0.93955 1.01816 0.96694 0.86236 1.20041 0.86256 0.80530 0.84372 1.90650 1.62711 1.50752 1.38281 1.46440 1.24253 1.58138 1.06722 1.19122 0.78363 0.92571 0.96961 1.21252 1.05781 1.39521 0.91657 0.91816 1.24946 0.95963 0.94821 0.98240 1.69978 1.11626 1.37278 1.33354 0.86367 0.78475 0.77922 0.84190 1.19593 1.20780 1.20793 1.22399 0.98378 0.99570 0.98670 1.20700 0.79672 0.84409 0.84249 1.90675 1.38437 1.27962 1.83876 0.93200 0.93262 0.90793 0.90533 0.91489 0.89560 0.91100 0.90257 0.92792 0.92947 0.92951 0.88421 0.90820 0.77631 0.95534 0.95445 0.92478 0.87212 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.80 37.16 0.36 -1.93 16 2 C -0.14 -1.83 5.36 -26.73 -0.14 -1.97 16 3 C 0.16 1.89 2.26 -67.93 -0.15 1.74 16 4 C -0.14 -1.47 5.36 -26.73 -0.14 -1.62 16 5 C -0.15 -1.29 9.80 37.16 0.36 -0.92 16 6 N -0.60 -7.65 1.74 -164.63 -0.29 -7.94 16 7 C 0.12 1.31 6.69 -2.93 -0.02 1.29 16 8 C -0.13 -1.53 3.56 -89.95 -0.32 -1.85 16 9 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 10 C 0.50 9.05 7.16 -10.99 -0.08 8.98 16 11 O -0.55 -11.76 14.17 5.56 0.08 -11.68 16 12 N -0.71 -13.92 5.27 -61.47 -0.32 -14.24 16 13 C 0.25 6.42 5.43 -5.19 -0.03 6.39 16 14 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 18 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.15 -1.79 6.38 -26.74 -0.17 -1.96 16 23 C 0.52 7.70 7.37 -10.86 -0.08 7.62 16 24 O -0.53 -9.54 15.02 5.55 0.08 -9.45 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.35 6.36 -51.93 -0.33 1.02 16 28 H 0.08 1.20 6.65 -51.93 -0.35 0.86 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.02 6.62 -51.93 -0.34 0.68 16 33 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.26 6.95 -51.93 -0.36 0.90 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.39 6.56 8.14 -40.82 -0.33 6.23 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 1.42 7.51 -51.93 -0.39 1.03 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -32.55 347.76 -7.43 -39.97 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.11 Total: 4.88 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.83 Total: 2.65 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.13 Total: -47.24 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.16 Total: -21.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.55 -7.43 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331210892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.204 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds