Wall clock time and date at job start Tue Mar 31 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 C 1.52999 * 109.46726 * 175.00127 * 3 2 1 5 5 C 1.53001 * 109.47109 * 185.00360 * 4 3 2 6 6 N 1.46493 * 109.47170 * 294.99985 * 3 2 1 7 7 C 1.46765 * 124.35316 * 120.00449 * 6 3 2 8 8 C 1.54831 * 105.49704 * 197.05968 * 7 6 3 9 9 H 1.08999 * 111.07622 * 216.48807 * 8 7 6 10 10 C 1.50698 * 111.01133 * 92.61336 * 8 7 6 11 11 O 1.21275 * 120.00527 * 6.33932 * 10 8 7 12 12 N 1.34777 * 119.99674 * 186.33343 * 10 8 7 13 13 C 1.46499 * 120.00190 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47395 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99699 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00346 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99736 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47274 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47179 * 120.00009 * 18 16 14 21 21 H 1.48505 * 109.47326 * 239.99834 * 18 16 14 22 22 C 1.54631 * 101.60220 * 334.56264 * 8 7 6 23 23 C 1.34418 * 124.35106 * 300.02753 * 6 3 2 24 24 O 1.21284 * 124.94191 * 359.53151 * 23 6 3 25 25 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46946 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.46614 * 60.00038 * 1 2 3 28 28 H 1.08998 * 109.46946 * 240.00123 * 2 1 3 29 29 H 1.09000 * 109.46614 * 119.99962 * 2 1 3 30 30 H 1.08997 * 109.47252 * 55.00160 * 3 2 1 31 31 H 1.09004 * 109.47022 * 304.99888 * 4 3 2 32 32 H 1.08992 * 109.47482 * 65.00100 * 4 3 2 33 33 H 1.09004 * 109.46793 * 299.99668 * 5 4 3 34 34 H 1.08997 * 109.47305 * 59.99075 * 5 4 3 35 35 H 1.09001 * 109.47255 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.23936 * 316.03618 * 7 6 3 37 37 H 1.08998 * 110.24401 * 77.94164 * 7 6 3 38 38 H 0.97005 * 119.99838 * 0.02562 * 12 10 8 39 39 H 1.08997 * 109.47626 * 300.00868 * 13 12 10 40 40 H 1.09003 * 109.46369 * 60.00624 * 13 12 10 41 41 H 0.96996 * 120.00177 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.48855 * 266.08223 * 22 8 7 43 43 H 1.08998 * 110.48570 * 143.57284 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0646 2.8849 0.2512 6 7 1.6525 2.0975 -1.2517 7 6 0.8077 3.2948 -1.3329 8 6 0.3172 3.3564 -2.8002 9 1 0.2602 4.3866 -3.1516 10 6 -1.0110 2.6615 -2.9555 11 8 -1.5994 2.2522 -1.9772 12 7 -1.5450 2.4949 -4.1817 13 6 -2.8359 1.8189 -4.3329 14 6 -3.2054 1.7623 -5.7928 15 1 -2.5446 2.1871 -6.5339 16 6 -4.3871 1.1683 -6.1821 17 7 -5.1921 0.6516 -5.2796 18 14 -4.8449 1.0976 -7.9918 19 1 -3.7783 1.7441 -8.7979 20 1 -4.9906 -0.3197 -8.4105 21 1 -6.1294 1.8115 -8.2059 22 6 1.4361 2.5822 -3.5349 23 6 2.0246 1.6788 -2.4737 24 8 2.7301 0.7171 -2.6934 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6055 1.9815 0.8418 31 1 3.8571 0.8800 1.0113 32 1 4.0030 0.9836 -0.7596 33 1 3.7724 3.4493 -0.6344 34 1 3.6264 3.3457 1.1365 35 1 5.1509 2.8863 0.3403 36 1 -0.0413 3.2039 -0.6554 37 1 1.3895 4.1841 -1.0904 38 1 -1.0742 2.8220 -4.9642 39 1 -2.7641 0.8059 -3.9370 40 1 -3.6006 2.3697 -3.7852 41 1 -6.0233 0.2334 -5.5536 42 1 2.1923 3.2708 -3.9119 43 1 1.0190 1.9914 -4.3504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331210892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:43 Heat of formation + Delta-G solvation = -115.051976 kcal Electronic energy + Delta-G solvation = -23302.237749 eV Core-core repulsion = 19959.581511 eV Total energy + Delta-G solvation = -3342.656238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99686 -40.12149 -37.63557 -36.59748 -36.08986 -34.35683 -33.02081 -31.99885 -29.33889 -28.58148 -27.33555 -25.27268 -23.45878 -22.95771 -22.88196 -21.10993 -19.84724 -19.08682 -17.97168 -17.78427 -17.05381 -16.75575 -16.39913 -16.02635 -15.73907 -15.45255 -15.29733 -14.77903 -14.65610 -14.31153 -14.05083 -13.93254 -13.84794 -13.79715 -13.44015 -13.19281 -12.88932 -12.82163 -12.74660 -12.51383 -12.45912 -12.22072 -12.00071 -11.89055 -11.78194 -11.75320 -11.45324 -10.81558 -10.69044 -10.57722 -9.79690 -9.58468 -8.29772 -6.45799 1.42778 1.43724 1.56970 1.60288 1.75675 2.09629 2.31496 2.56239 3.05687 3.33263 3.39136 3.75115 3.83322 3.97913 4.02659 4.13738 4.33100 4.42780 4.47334 4.54626 4.59676 4.61438 4.72942 4.79866 4.89336 4.91860 4.98428 4.99331 5.11670 5.13561 5.17086 5.24003 5.25245 5.36979 5.41492 5.50158 5.70338 5.75989 5.85734 6.22242 6.66143 6.91742 7.22066 7.23925 7.50792 8.82498 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.003940 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.075688 B = 7104.833867 C = 7337.136731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.158 3.842 4 C -0.134 4.134 5 C -0.141 4.141 6 N -0.601 5.601 7 C 0.115 3.885 8 C -0.110 4.110 9 H 0.169 0.831 10 C 0.497 3.503 11 O -0.586 6.586 12 N -0.706 5.706 13 C 0.269 3.731 14 C -0.554 4.554 15 H 0.084 0.916 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.252 1.252 20 H -0.282 1.282 21 H -0.278 1.278 22 C -0.143 4.143 23 C 0.506 3.494 24 O -0.575 6.575 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.408 0.592 39 H -0.020 1.020 40 H -0.009 1.009 41 H 0.268 0.732 42 H 0.154 0.846 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.540 9.299 8.679 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.056 3.944 4 C -0.173 4.173 5 C -0.199 4.199 6 N -0.334 5.334 7 C -0.007 4.007 8 C -0.131 4.131 9 H 0.187 0.813 10 C 0.284 3.716 11 O -0.467 6.467 12 N -0.356 5.356 13 C 0.146 3.854 14 C -0.592 4.592 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.805 3.195 19 H -0.175 1.175 20 H -0.208 1.208 21 H -0.203 1.203 22 C -0.183 4.183 23 C 0.295 3.705 24 O -0.456 6.456 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.244 0.756 39 H -0.002 1.002 40 H 0.009 0.991 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.320 8.399 9.360 21.404 hybrid contribution -0.859 -0.664 -1.091 1.539 sum 16.461 7.735 8.269 19.979 Atomic orbital electron populations 1.21700 0.96068 1.00803 1.01886 1.21895 0.95494 0.97337 1.02505 1.21205 0.95368 0.92497 0.85376 1.21876 0.93768 0.99130 1.02498 1.21680 1.01037 0.95064 1.02094 1.48362 1.49950 1.29154 1.05916 1.22291 0.94816 0.88198 0.95394 1.22443 0.89569 1.03234 0.97845 0.81343 1.21178 0.88006 0.79531 0.82853 1.90638 1.64437 1.52103 1.39489 1.46161 1.22609 1.58273 1.08526 1.18482 0.80440 0.90120 0.96337 1.21668 1.06181 1.39203 0.92144 0.89768 1.26038 0.95910 0.94182 1.03449 1.70138 1.12301 1.38449 1.36121 0.85153 0.78579 0.77855 0.77895 1.17511 1.20817 1.20335 1.22447 0.98948 0.99592 0.97273 1.21253 0.79416 0.84297 0.85522 1.90652 1.40532 1.29785 1.84607 0.93952 0.91818 0.94447 0.93688 0.89041 0.87418 0.89600 0.93170 0.93113 0.91315 0.92325 0.90129 0.85978 0.75624 1.00186 0.99113 0.92339 0.82814 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.80 71.99 0.71 -3.87 16 2 C -0.13 -3.55 5.36 30.60 0.16 -3.38 16 3 C 0.16 3.44 2.26 44.99 0.10 3.54 16 4 C -0.13 -2.57 5.36 30.59 0.16 -2.41 16 5 C -0.14 -2.05 9.80 71.98 0.71 -1.34 16 6 N -0.60 -14.38 1.74 -793.36 -1.38 -15.76 16 7 C 0.12 2.26 6.69 86.95 0.58 2.84 16 8 C -0.11 -2.33 3.56 -10.36 -0.04 -2.37 16 9 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 10 C 0.50 17.87 7.16 87.66 0.63 18.49 16 11 O -0.59 -26.26 14.17 -3.01 -0.04 -26.31 16 12 N -0.71 -28.07 5.27 -466.80 -2.46 -30.53 16 13 C 0.27 14.48 5.43 85.63 0.46 14.94 16 14 C -0.55 -29.77 9.28 25.60 0.24 -29.53 16 15 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 18 Si 0.98 42.25 29.54 68.60 2.03 44.28 16 19 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.14 -3.07 6.38 30.59 0.20 -2.87 16 23 C 0.51 14.57 7.37 87.90 0.65 15.22 16 24 O -0.58 -21.08 15.02 -3.04 -0.05 -21.13 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.43 6.36 -2.39 -0.02 1.42 16 28 H 0.04 1.48 6.65 -2.39 -0.02 1.47 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.28 6.62 -2.39 -0.02 1.26 16 33 H 0.05 0.77 7.75 -2.39 -0.02 0.75 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.94 6.95 -2.39 -0.02 1.92 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.41 13.24 8.14 -92.70 -0.75 12.48 16 39 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 2.34 7.51 -2.39 -0.02 2.32 16 Total: -1.00 -77.45 347.76 3.65 -73.80 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.24 Total: 21.58 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.02 Total: 9.93 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.55 Total: -102.15 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.09 Total: -47.43 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -77.45 3.65 -73.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331210892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.251 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds