Wall clock time and date at job start Tue Mar 31 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.55446 * 2 1 4 4 C 1.53300 * 109.50939 * 120.12266 * 2 1 3 5 5 N 1.47151 * 108.38416 * 172.22595 * 4 2 1 6 6 C 1.34783 * 120.98251 * 129.44155 * 5 4 2 7 7 O 1.21586 * 119.99437 * 5.20341 * 6 5 4 8 8 N 1.34767 * 120.00135 * 185.20326 * 6 5 4 9 9 C 1.46497 * 120.00231 * 185.12953 * 8 6 5 10 10 C 1.53004 * 109.47274 * 184.91778 * 9 8 6 11 11 C 1.50694 * 115.55062 * 300.58779 * 10 9 8 12 12 H 1.07997 * 120.00274 * 144.04795 * 11 10 9 13 13 C 1.37884 * 119.99869 * 324.04414 * 11 10 9 14 14 N 1.31507 * 120.00019 * 350.78901 * 13 11 10 15 15 Si 1.86796 * 119.99688 * 170.78674 * 13 11 10 16 16 H 1.48498 * 109.47441 * 60.00218 * 15 13 11 17 17 H 1.48504 * 109.46930 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47428 * 299.99829 * 15 13 11 19 19 C 1.52997 * 117.49726 * 154.91357 * 10 9 8 20 20 C 1.53005 * 117.49794 * 86.25679 * 10 9 8 21 21 C 1.47148 * 118.03640 * 309.72028 * 5 4 2 22 22 C 1.52875 * 108.61152 * 50.22125 * 21 5 4 23 23 O 1.42959 * 109.51359 * 239.86741 * 2 1 3 24 24 H 1.09005 * 109.47477 * 299.87897 * 1 2 3 25 25 H 1.09004 * 109.47010 * 59.87560 * 1 2 3 26 26 H 1.08998 * 109.47414 * 179.87626 * 1 2 3 27 27 H 1.09004 * 109.47279 * 180.12693 * 3 2 1 28 28 H 1.09005 * 109.47086 * 300.12565 * 3 2 1 29 29 H 1.08998 * 109.47483 * 60.12259 * 3 2 1 30 30 H 1.08999 * 109.68037 * 52.49937 * 4 2 1 31 31 H 1.09006 * 109.68012 * 291.94997 * 4 2 1 32 32 H 0.97006 * 119.99829 * 5.13356 * 8 6 5 33 33 H 1.08998 * 109.47120 * 64.91710 * 9 8 6 34 34 H 1.08997 * 109.47308 * 304.91922 * 9 8 6 35 35 H 0.97004 * 119.99975 * 185.00404 * 14 13 11 36 36 H 1.08996 * 117.50168 * 0.02562 * 19 10 9 37 37 H 1.09007 * 117.49543 * 145.02016 * 19 10 9 38 38 H 1.08993 * 117.49439 * 214.97917 * 20 10 9 39 39 H 1.08997 * 117.49616 * 359.97345 * 20 10 9 40 40 H 1.09001 * 109.68480 * 170.01126 * 21 5 4 41 41 H 1.09000 * 109.67786 * 290.55625 * 21 5 4 42 42 H 1.08998 * 109.58670 * 187.92648 * 22 21 5 43 43 H 1.09003 * 109.40901 * 67.84184 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5011 -0.8762 1.1338 6 6 4.3193 -0.5033 2.1378 7 8 3.8515 -0.1230 3.1937 8 7 5.6558 -0.5520 1.9714 9 6 6.5454 -0.2550 3.0968 10 6 7.9974 -0.2603 2.6144 11 6 8.4768 -1.5548 2.0100 12 1 9.1658 -1.5401 1.1785 13 6 8.0358 -2.7581 2.5188 14 7 7.3453 -2.7855 3.6377 15 14 8.4190 -4.3493 1.6185 16 1 9.8909 -4.5197 1.5191 17 1 7.8372 -5.4932 2.3657 18 1 7.8332 -4.3001 0.2548 19 6 9.0096 0.5649 3.4115 20 6 8.5524 1.0404 2.0302 21 6 4.0410 -1.4406 -0.1133 22 6 3.4313 -0.6856 -1.2946 23 8 2.0076 -0.6764 -1.1654 24 1 -0.3634 0.5120 0.8911 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3634 -1.0276 -0.0022 27 1 3.1321 1.4402 -0.0023 28 1 1.6777 1.9568 -0.8889 29 1 1.6814 1.9555 0.8910 30 1 1.5757 -1.7078 1.3210 31 1 1.8030 -0.1397 2.1377 32 1 6.0287 -0.7836 1.1064 33 1 6.4170 -1.0115 3.8709 34 1 6.3013 0.7263 3.5038 35 1 7.0975 -3.6355 4.0340 36 1 8.6413 1.1111 4.2798 37 1 10.0225 0.1715 3.4985 38 1 9.2646 0.9596 1.2090 39 1 7.8831 1.8996 1.9891 40 1 5.1252 -1.3288 -0.1278 41 1 3.7795 -2.4965 -0.1818 42 1 3.7091 -1.1788 -2.2261 43 1 3.8029 0.3391 -1.3003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336403241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:38 Heat of formation + Delta-G solvation = -39.540241 kcal Electronic energy + Delta-G solvation = -23816.685747 eV Core-core repulsion = 20477.303944 eV Total energy + Delta-G solvation = -3339.381803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37298 -38.47830 -36.70670 -34.40191 -33.84342 -32.82111 -32.20876 -29.04737 -27.42737 -26.95589 -25.66573 -24.45757 -23.25792 -21.25014 -20.03698 -19.33455 -18.89352 -17.81708 -16.63022 -16.16033 -15.61612 -15.44307 -14.92179 -14.80947 -14.62834 -14.10205 -13.79188 -13.48621 -13.25220 -13.12132 -12.68735 -12.38633 -12.14392 -12.01454 -11.77624 -11.70887 -11.51719 -11.38739 -11.22965 -11.05917 -10.82364 -10.53677 -10.43549 -10.29737 -9.95549 -9.69031 -9.30143 -9.12488 -8.84979 -8.38004 -8.21229 -7.72245 -6.06587 -4.20485 3.09626 3.19037 3.27617 3.27822 3.68062 3.90738 4.26371 4.53312 4.70472 4.85339 4.89830 4.97748 5.04561 5.19933 5.30073 5.47513 5.50870 5.53001 5.62006 5.71316 5.78839 5.83332 5.91236 5.94723 6.02015 6.05452 6.20549 6.30713 6.55071 6.61625 6.70674 6.73373 6.90734 7.05079 7.17096 7.26471 7.46850 7.58838 7.67351 7.97796 8.31179 8.70380 8.84499 9.35441 9.41425 10.87605 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.005565 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.726705 B = 5029.838733 C = 5604.239622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.096 3.904 3 C -0.173 4.173 4 C 0.112 3.888 5 N -0.638 5.638 6 C 0.705 3.295 7 O -0.604 6.604 8 N -0.709 5.709 9 C 0.170 3.830 10 C 0.038 3.962 11 C -0.499 4.499 12 H 0.061 0.939 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.194 4.194 20 C -0.212 4.212 21 C 0.078 3.922 22 C 0.046 3.954 23 O -0.374 6.374 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.394 0.606 33 H 0.115 0.885 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 4.081 -8.917 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 C -0.230 4.230 4 C -0.012 4.012 5 N -0.377 5.377 6 C 0.406 3.594 7 O -0.484 6.484 8 N -0.362 5.362 9 C 0.047 3.953 10 C 0.037 3.963 11 C -0.537 4.537 12 H 0.079 0.921 13 C -0.129 4.129 14 N -0.503 5.503 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.233 4.233 20 C -0.249 4.249 21 C -0.046 4.046 22 C -0.032 4.032 23 O -0.293 6.293 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.230 0.770 33 H 0.132 0.868 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.396 4.120 -8.114 13.817 hybrid contribution 0.849 -0.918 -0.685 1.426 sum -9.547 3.202 -8.799 13.372 Atomic orbital electron populations 1.21702 0.91872 1.02974 1.02670 1.21931 0.94938 0.91723 0.85811 1.22329 1.02374 0.95864 1.02441 1.22014 0.79799 1.00811 0.98546 1.47193 1.05905 1.68166 1.16478 1.15857 0.81870 0.78743 0.82911 1.90828 1.75698 1.55555 1.26275 1.45153 1.02994 1.72551 1.15492 1.21072 0.86362 0.99115 0.88741 1.19193 0.90227 0.89613 0.97229 1.20446 1.27727 0.88605 1.16885 0.92117 1.24975 0.94167 0.99004 0.94732 1.69754 1.37071 1.26072 1.17400 0.86665 0.78703 0.82801 0.79916 1.20195 1.21210 1.20073 1.22910 1.01072 1.06483 0.92796 1.22930 1.04931 1.00221 0.96814 1.22176 0.99724 0.98313 0.84427 1.22914 0.81536 1.00442 0.98291 1.87956 1.20818 1.76971 1.43543 0.90826 0.91635 0.91652 0.91834 0.92058 0.91380 0.91592 0.88318 0.77035 0.86762 0.95731 0.92513 0.91486 0.90187 0.90675 0.91428 0.88905 0.90978 0.87889 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.85 37.16 0.33 -0.98 16 2 C 0.10 1.19 1.11 -90.47 -0.10 1.09 16 3 C -0.17 -2.09 8.10 37.16 0.30 -1.79 16 4 C 0.11 1.67 5.29 -3.53 -0.02 1.65 16 5 N -0.64 -10.90 2.55 -178.26 -0.45 -11.36 16 6 C 0.70 15.02 8.31 -86.92 -0.72 14.30 16 7 O -0.60 -14.86 15.82 5.29 0.08 -14.78 16 8 N -0.71 -15.28 5.34 -65.23 -0.35 -15.63 16 9 C 0.17 4.08 4.89 -4.04 -0.02 4.06 16 10 C 0.04 0.90 1.91 -155.66 -0.30 0.60 16 11 C -0.50 -12.55 8.52 -34.44 -0.29 -12.84 16 12 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 13 C 0.08 1.93 5.27 -17.82 -0.09 1.84 16 14 N -0.87 -23.25 10.64 55.43 0.59 -22.66 16 15 Si 0.89 19.85 29.55 -169.99 -5.02 14.82 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 C -0.19 -4.27 9.95 -26.70 -0.27 -4.54 16 20 C -0.21 -4.40 9.95 -26.69 -0.27 -4.66 16 21 C 0.08 1.11 6.62 -3.75 -0.02 1.09 16 22 C 0.05 0.55 6.58 37.09 0.24 0.79 16 23 O -0.37 -4.90 10.23 -35.23 -0.36 -5.26 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.87 6.11 -51.93 -0.32 0.56 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.57 7.12 -51.93 -0.37 1.20 16 32 H 0.39 7.97 5.66 -40.82 -0.23 7.74 16 33 H 0.11 3.13 5.69 -51.93 -0.30 2.84 16 34 H 0.02 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.35 5.65 -51.93 -0.29 1.06 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.70 6.25 -51.93 -0.32 0.38 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -29.24 339.18 -8.50 -37.74 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.87 Total: 11.41 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.23 Total: 0.61 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.21 Total: -49.65 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.28 Total: -20.04 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.24 -8.50 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336403241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.800 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds