Wall clock time and date at job start Tue Mar 31 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.52999 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47431 * 55.00530 * 4 3 2 6 6 C 1.52999 * 109.47189 * 175.00090 * 4 3 2 7 7 N 1.46500 * 109.47187 * 295.00188 * 4 3 2 8 8 C 1.46766 * 124.34898 * 120.02451 * 7 4 3 9 9 C 1.54480 * 105.47221 * 162.98294 * 8 7 4 10 10 H 1.08996 * 110.99848 * 143.54821 * 9 8 7 11 11 C 1.50697 * 110.97084 * 267.30093 * 9 8 7 12 12 O 1.21287 * 120.00230 * 353.82835 * 11 9 8 13 13 N 1.34778 * 120.00190 * 173.83755 * 11 9 8 14 14 C 1.46502 * 119.99925 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46709 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00251 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99996 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47080 * 90.00609 * 19 17 15 21 21 H 1.48505 * 109.47047 * 210.00301 * 19 17 15 22 22 H 1.48495 * 109.47591 * 330.00428 * 19 17 15 23 23 C 1.54627 * 101.76536 * 25.41761 * 9 8 7 24 24 C 1.34413 * 124.34944 * 300.02636 * 7 4 3 25 25 O 1.21279 * 124.94390 * 0.66828 * 24 7 4 26 26 H 1.09002 * 109.46883 * 299.99840 * 1 2 3 27 27 H 1.08999 * 109.47676 * 59.99581 * 1 2 3 28 28 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46603 * 240.00622 * 2 1 3 30 30 H 1.08990 * 109.47152 * 120.00623 * 2 1 3 31 31 H 1.09002 * 109.47115 * 60.00302 * 3 2 1 32 32 H 1.09001 * 109.47372 * 299.99959 * 3 2 1 33 33 H 1.08994 * 109.47462 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.47287 * 300.00098 * 6 4 3 35 35 H 1.09008 * 109.47055 * 60.00133 * 6 4 3 36 36 H 1.09003 * 110.24225 * 43.98865 * 8 7 4 37 37 H 1.08996 * 110.32077 * 282.02069 * 8 7 4 38 38 H 0.97001 * 119.99758 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.46965 * 299.99159 * 14 13 11 40 40 H 1.08993 * 109.47452 * 59.99631 * 14 13 11 41 41 H 0.96997 * 119.99435 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.48832 * 216.52571 * 23 9 8 43 43 H 1.08997 * 110.48725 * 93.87473 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0800 2.8794 -0.1263 7 7 4.0588 0.8585 1.2508 8 6 4.9065 -0.3369 1.3313 9 6 5.5136 -0.3168 2.7516 10 1 5.5984 -1.3260 3.1546 11 6 6.8513 0.3771 2.7565 12 8 7.3567 0.7275 1.7111 13 7 7.4864 0.6082 3.9227 14 6 8.7871 1.2822 3.9273 15 6 9.2775 1.4177 5.3459 16 1 8.6799 1.0400 6.1622 17 6 10.4893 2.0240 5.6015 18 7 11.2168 2.4844 4.6073 19 14 11.0967 2.1926 7.3598 20 1 11.9000 0.9974 7.7228 21 1 11.9394 3.4097 7.4778 22 1 9.9341 2.3047 8.2767 23 6 4.4616 0.5043 3.5326 24 6 3.7886 1.3486 2.4729 25 8 3.1012 2.3230 2.6942 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.1699 2.8794 -0.1273 34 1 3.7163 3.3139 -1.0575 35 1 3.7170 3.4688 0.7158 36 1 5.6971 -0.2897 0.5824 37 1 4.3070 -1.2362 1.1901 38 1 7.0822 0.3282 4.7588 39 1 9.5021 0.6961 3.3498 40 1 8.6851 2.2719 3.4824 41 1 12.0690 2.9113 4.7872 42 1 4.9467 1.1387 4.2746 43 1 3.7383 -0.1573 4.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340457076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:16 Heat of formation + Delta-G solvation = -94.746588 kcal Electronic energy + Delta-G solvation = -22849.673619 eV Core-core repulsion = 19507.897889 eV Total energy + Delta-G solvation = -3341.775730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84820 -38.66864 -36.54341 -35.58803 -34.26827 -32.98291 -32.31619 -30.01444 -27.66726 -27.21541 -26.76011 -23.75823 -22.53117 -21.96020 -21.45048 -19.61351 -18.80627 -17.64268 -16.85203 -16.16425 -15.50056 -15.27101 -15.15264 -14.93532 -14.42085 -14.28228 -14.00797 -13.69757 -13.56840 -13.21847 -12.78893 -12.71753 -12.62716 -12.12693 -12.04735 -11.97848 -11.78116 -11.71377 -11.47759 -11.45958 -11.04466 -10.97204 -10.90407 -10.81662 -10.78777 -10.33949 -9.50381 -9.43580 -9.14794 -8.77291 -8.61318 -7.96162 -6.19474 -4.26644 2.69607 3.03033 3.19180 3.22858 3.29253 3.31636 3.89451 4.31883 4.32735 4.40085 4.64957 4.82303 4.86144 4.90163 5.09856 5.16974 5.18846 5.25360 5.38880 5.44279 5.45701 5.50366 5.62114 5.66951 5.70367 5.76709 5.81896 5.86142 5.88173 5.99507 6.07120 6.19365 6.32067 6.70705 7.21668 7.25014 7.34502 7.46704 7.61489 7.93162 8.29005 8.53825 8.72250 8.99815 9.39963 10.90717 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.003453 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.105342 B = 8106.913840 C = 8205.390059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.159 3.841 5 H 0.086 0.914 6 C -0.169 4.169 7 N -0.607 5.607 8 C 0.116 3.884 9 C -0.127 4.127 10 H 0.120 0.880 11 C 0.505 3.495 12 O -0.548 6.548 13 N -0.708 5.708 14 C 0.250 3.750 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.149 4.149 24 C 0.522 3.478 25 O -0.532 6.532 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.108 0.892 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.918 -7.824 -7.451 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.175 4.175 4 C 0.057 3.943 5 H 0.104 0.896 6 C -0.227 4.227 7 N -0.341 5.341 8 C -0.007 4.007 9 C -0.149 4.149 10 H 0.138 0.862 11 C 0.288 3.712 12 O -0.427 6.427 13 N -0.355 5.355 14 C 0.130 3.870 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.190 4.190 24 C 0.310 3.690 25 O -0.409 6.409 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.722 -6.905 -8.196 20.711 hybrid contribution 0.401 -0.094 1.347 1.408 sum -17.321 -6.999 -6.850 19.898 Atomic orbital electron populations 1.21757 0.95995 1.01330 1.01754 1.21482 0.95695 0.96838 1.01783 1.22058 0.94580 0.97332 1.03493 1.20948 0.93523 0.94780 0.85027 0.89550 1.22175 1.02132 0.95877 1.02558 1.48282 1.50912 1.28810 1.06085 1.22010 0.94035 0.87265 0.97385 1.22354 0.93936 1.01603 0.96980 0.86184 1.20057 0.85984 0.80283 0.84852 1.90663 1.67652 1.52689 1.31733 1.46439 1.23226 1.58738 1.07144 1.19125 0.77875 0.92550 0.97488 1.21213 1.04961 1.40283 0.91801 0.91849 1.24956 0.96341 0.94889 0.97820 1.69974 1.13002 1.38121 1.31153 0.86407 0.78857 0.77744 0.83871 1.20447 1.20993 1.19694 1.22402 0.98523 0.99753 0.98281 1.20710 0.79971 0.84075 0.84270 1.90674 1.39741 1.26650 1.83856 0.92784 0.92891 0.92966 0.92278 0.92104 0.90165 0.91074 0.91800 0.91795 0.91136 0.88442 0.90762 0.77591 0.95447 0.95535 0.92415 0.87373 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.07 5.82 -26.73 -0.16 -1.22 16 3 C -0.14 -1.42 4.64 -26.73 -0.12 -1.54 16 4 C 0.16 1.86 2.86 -67.93 -0.19 1.66 16 5 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 6 C -0.17 -2.21 9.20 37.16 0.34 -1.87 16 7 N -0.61 -7.85 2.28 -164.84 -0.38 -8.22 16 8 C 0.12 1.33 6.68 -3.12 -0.02 1.31 16 9 C -0.13 -1.56 3.54 -90.14 -0.32 -1.88 16 10 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.50 9.30 7.16 -10.99 -0.08 9.22 16 12 O -0.55 -12.33 15.51 5.55 0.09 -12.24 16 13 N -0.71 -14.13 5.27 -61.47 -0.32 -14.46 16 14 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 15 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.75 5.46 -17.81 -0.10 1.66 16 18 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.15 -1.81 6.39 -26.74 -0.17 -1.98 16 24 C 0.52 7.80 7.39 -10.86 -0.08 7.72 16 25 O -0.53 -9.59 15.07 5.56 0.08 -9.51 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 31 H 0.08 1.04 6.62 -51.93 -0.34 0.70 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.08 6.81 -51.92 -0.35 0.73 16 36 H 0.10 1.28 6.94 -51.93 -0.36 0.92 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.39 6.62 8.14 -40.82 -0.33 6.29 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.11 1.44 7.51 -51.93 -0.39 1.05 16 43 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -33.25 351.48 -7.61 -40.86 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.21 Total: 3.94 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.88 Total: 3.83 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.04 Total: -47.85 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.25 -7.61 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340457076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.891 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds