Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46923 * 2 1 4 4 C 1.53007 * 109.46948 * 119.99610 * 2 1 3 5 5 H 1.08998 * 110.53313 * 302.83000 * 4 2 1 6 6 N 1.47309 * 110.53026 * 65.87008 * 4 2 1 7 7 C 1.34525 * 106.61823 * 118.87479 * 6 4 2 8 8 O 1.21543 * 123.77085 * 179.85399 * 7 6 4 9 9 N 1.33791 * 112.45685 * 359.58762 * 7 6 4 10 10 C 1.46500 * 124.17509 * 180.23558 * 9 7 6 11 11 C 1.53001 * 109.47359 * 90.02230 * 10 9 7 12 12 C 1.52997 * 109.46793 * 299.99773 * 11 10 9 13 13 C 1.52997 * 109.47242 * 59.99827 * 11 10 9 14 14 C 1.53004 * 109.47079 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47038 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99921 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00196 * 179.97438 * 15 14 11 18 18 N 1.31506 * 120.00422 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99424 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47062 * 90.00094 * 19 17 15 21 21 H 1.48504 * 109.46885 * 209.99356 * 19 17 15 22 22 H 1.48494 * 109.47526 * 329.99784 * 19 17 15 23 23 C 1.34766 * 111.64749 * 0.26475 * 9 7 6 24 24 O 1.21226 * 127.15862 * 180.02562 * 23 9 7 25 25 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 26 26 H 1.08999 * 109.46943 * 60.00301 * 1 2 3 27 27 H 1.08999 * 109.46762 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47326 * 239.99822 * 2 1 3 29 29 H 1.08999 * 109.47065 * 299.99624 * 3 2 1 30 30 H 1.08997 * 109.47265 * 59.99785 * 3 2 1 31 31 H 1.09003 * 109.46716 * 180.02562 * 3 2 1 32 32 H 0.97005 * 126.68989 * 298.75955 * 6 4 2 33 33 H 1.08999 * 109.46956 * 210.02219 * 10 9 7 34 34 H 1.09004 * 109.47087 * 330.02121 * 10 9 7 35 35 H 1.09001 * 109.47532 * 60.00363 * 12 11 10 36 36 H 1.09005 * 109.46797 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47400 * 299.99954 * 12 11 10 38 38 H 1.08999 * 109.47013 * 60.00048 * 13 11 10 39 39 H 1.08995 * 109.47083 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46848 * 300.00137 * 13 11 10 41 41 H 1.08999 * 109.47080 * 299.99894 * 14 11 10 42 42 H 1.08995 * 109.47205 * 59.99710 * 14 11 10 43 43 H 0.96995 * 120.00286 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6457 -0.2508 2.1501 6 7 1.6805 -2.1490 1.2046 7 6 2.8363 -2.8373 1.2146 8 8 2.9003 -4.0508 1.1880 9 7 3.9076 -2.0367 1.2516 10 6 5.2922 -2.5149 1.2653 11 6 5.8000 -2.6485 -0.1718 12 6 4.9235 -3.6460 -0.9317 13 6 5.7381 -1.2851 -0.8634 14 6 7.2459 -3.1485 -0.1574 15 6 7.7458 -3.2807 -1.5729 16 1 7.0973 -3.0324 -2.4001 17 6 9.0316 -3.7175 -1.8121 18 7 9.4680 -3.8324 -3.0473 19 14 10.1535 -4.1463 -0.3813 20 1 9.9941 -5.5829 -0.0406 21 1 11.5643 -3.8815 -0.7620 22 1 9.7941 -3.3155 0.7958 23 6 3.5556 -0.7360 1.2752 24 8 4.2968 0.2226 1.3096 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 0.7849 -2.5206 1.1754 33 1 5.9167 -1.8042 1.8067 34 1 5.3363 -3.4862 1.7580 35 1 3.8932 -3.2903 -0.9420 36 1 5.2855 -3.7415 -1.9554 37 1 4.9675 -4.6174 -0.4390 38 1 6.3626 -0.5745 -0.3220 39 1 6.1003 -1.3802 -1.8870 40 1 4.7079 -0.9294 -0.8736 41 1 7.8707 -2.4382 0.3841 42 1 7.2896 -4.1199 0.3351 43 1 10.3723 -4.1401 -3.2155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348953042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -62.276873 kcal Electronic energy + Delta-G solvation = -23945.481546 eV Core-core repulsion = 20605.113809 eV Total energy + Delta-G solvation = -3340.367737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52205 -38.57291 -37.60346 -36.39435 -35.15566 -33.20649 -32.05633 -28.18307 -27.63852 -27.07100 -26.51082 -26.44056 -22.89277 -22.78212 -20.92842 -20.35886 -18.28912 -17.76152 -17.12673 -16.71713 -16.54654 -15.47752 -15.27858 -15.08450 -14.49259 -14.13513 -14.04948 -13.69848 -13.58924 -13.27263 -12.94072 -12.64514 -12.45132 -12.28370 -12.03430 -11.96608 -11.53590 -11.21290 -11.09821 -10.99374 -10.98722 -10.90924 -10.67646 -10.51303 -10.00650 -9.90616 -9.81170 -9.67200 -9.52480 -9.23399 -8.84845 -8.49377 -5.99621 -3.96446 1.67531 2.31713 3.08483 3.14506 3.34203 3.41702 3.44591 3.90870 4.28091 4.47248 4.49033 4.83987 4.88717 5.14457 5.20920 5.33745 5.36116 5.46289 5.48936 5.55639 5.62539 5.64151 5.74628 5.77875 5.91680 6.08341 6.12384 6.16654 6.29830 6.42355 6.70240 6.71458 6.75505 6.95642 7.10839 7.14709 7.17526 7.23042 7.41785 7.47903 7.82285 8.20391 8.58431 9.05028 9.62704 11.13366 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.004787 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.622676 B = 5847.801925 C = 6129.448672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.157 4.157 4 C 0.096 3.904 5 H 0.122 0.878 6 N -0.730 5.730 7 C 0.701 3.299 8 O -0.536 6.536 9 N -0.566 5.566 10 C 0.122 3.878 11 C -0.066 4.066 12 C -0.120 4.120 13 C -0.122 4.122 14 C -0.001 4.001 15 C -0.508 4.508 16 H 0.077 0.923 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.524 3.476 24 O -0.460 6.460 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.436 0.564 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 8.597 9.627 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.214 4.214 4 C -0.014 4.014 5 H 0.140 0.860 6 N -0.395 5.395 7 C 0.402 3.598 8 O -0.408 6.408 9 N -0.311 5.311 10 C 0.002 3.998 11 C -0.067 4.067 12 C -0.177 4.177 13 C -0.179 4.179 14 C -0.038 4.038 15 C -0.546 4.546 16 H 0.095 0.905 17 C -0.134 4.134 18 N -0.544 5.544 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 C 0.310 3.690 24 O -0.329 6.329 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.280 0.720 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.033 0.967 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.219 8.383 9.547 22.211 hybrid contribution 0.276 -0.481 0.651 0.855 sum -17.943 7.902 10.198 22.099 Atomic orbital electron populations 1.21827 0.93753 1.01994 1.02639 1.21303 0.96845 0.97238 0.95974 1.21956 1.03433 0.93868 1.02162 1.22198 0.93252 0.83822 1.02093 0.86034 1.45565 1.08072 1.05968 1.79902 1.15890 0.81024 0.85477 0.77414 1.91024 1.85344 1.10188 1.54291 1.46435 1.09300 1.08147 1.67249 1.22118 0.76445 1.00916 1.00314 1.20821 0.98124 0.96426 0.91294 1.21715 0.96143 0.98210 1.01661 1.21736 0.98518 0.95402 1.02263 1.19584 0.90021 0.95584 0.98655 1.21063 0.98345 1.44053 0.91122 0.90461 1.24992 0.97947 0.95198 0.95286 1.69898 1.17661 1.47755 1.19049 0.86853 0.80085 0.79173 0.83608 1.20365 1.21529 1.19036 1.20696 0.90419 0.82968 0.74918 1.90777 1.59165 1.37521 1.45445 0.92167 0.91672 0.92532 0.89876 0.91939 0.92257 0.90398 0.72023 0.89203 0.89026 0.95590 0.91383 0.92983 0.93100 0.91148 0.95727 0.96375 0.96746 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.10 37.16 0.34 -0.49 16 2 C -0.09 -0.77 2.72 -90.61 -0.25 -1.02 16 3 C -0.16 -1.33 8.85 37.16 0.33 -1.00 16 4 C 0.10 0.87 3.22 -68.20 -0.22 0.65 16 5 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 6 N -0.73 -7.11 5.95 -59.19 -0.35 -7.47 16 7 C 0.70 10.09 7.05 -88.02 -0.62 9.47 16 8 O -0.54 -9.53 16.32 5.33 0.09 -9.44 16 9 N -0.57 -8.41 2.13 -120.73 -0.26 -8.67 16 10 C 0.12 2.07 4.73 -4.04 -0.02 2.05 16 11 C -0.07 -1.31 0.60 -154.51 -0.09 -1.40 16 12 C -0.12 -2.42 7.09 37.16 0.26 -2.16 16 13 C -0.12 -2.38 7.23 37.16 0.27 -2.11 16 14 C 0.00 -0.01 3.11 -27.88 -0.09 -0.10 16 15 C -0.51 -14.05 8.20 -34.44 -0.28 -14.33 16 16 H 0.08 2.29 5.92 -52.48 -0.31 1.98 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 19 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 23 C 0.52 6.95 5.72 -10.55 -0.06 6.89 16 24 O -0.46 -7.04 14.73 5.60 0.08 -6.95 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.29 7.39 -51.93 -0.38 -0.09 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 32 H 0.44 3.09 8.39 -40.82 -0.34 2.75 16 33 H 0.09 1.46 8.00 -51.93 -0.42 1.04 16 34 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 35 H 0.03 0.48 6.18 -51.93 -0.32 0.16 16 36 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 37 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.52 6.62 -51.93 -0.34 1.18 16 40 H 0.02 0.43 6.19 -51.93 -0.32 0.10 16 41 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -32.54 331.70 -6.68 -39.22 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.81 Total: -0.05 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.53 Total: -1.73 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.16 Total: -43.12 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.17 Total: -16.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.54 -6.68 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348953042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.058 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds