Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47158 * 175.00590 * 3 2 1 5 5 H 1.08999 * 109.47421 * 305.29971 * 4 3 2 6 6 O 1.42900 * 109.47342 * 65.30043 * 4 3 2 7 7 C 1.42896 * 114.00245 * 205.18077 * 6 4 3 8 8 C 1.50703 * 109.47223 * 185.29700 * 4 3 2 9 9 N 1.29952 * 126.28320 * 285.02540 * 8 4 3 10 10 O 1.21298 * 110.24623 * 179.73296 * 9 8 4 11 11 C 1.33641 * 109.81598 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55304 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47457 * 269.97653 * 12 11 10 14 14 C 1.52995 * 109.47436 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47484 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47515 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00056 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99818 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47384 * 119.99815 * 20 18 16 23 23 H 1.48500 * 109.47451 * 239.99926 * 20 18 16 24 24 N 1.31136 * 106.89480 * 0.02562 * 11 10 9 25 25 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47208 * 300.00556 * 1 2 3 27 27 H 1.09008 * 109.46906 * 60.00079 * 1 2 3 28 28 H 1.08999 * 109.47208 * 239.99444 * 2 1 3 29 29 H 1.09008 * 109.46906 * 119.99921 * 2 1 3 30 30 H 1.08992 * 109.47168 * 55.00428 * 3 2 1 31 31 H 1.08999 * 109.46535 * 295.00421 * 3 2 1 32 32 H 1.09007 * 109.47613 * 64.97196 * 7 6 4 33 33 H 1.09004 * 109.47383 * 184.97261 * 7 6 4 34 34 H 1.09003 * 109.47469 * 304.97767 * 7 6 4 35 35 H 1.09000 * 109.47237 * 29.97735 * 12 11 10 36 36 H 1.09005 * 109.47068 * 149.97791 * 12 11 10 37 37 H 1.09004 * 109.47404 * 300.00422 * 13 12 11 38 38 H 1.09005 * 109.46869 * 60.00016 * 13 12 11 39 39 H 1.09000 * 109.47339 * 300.00131 * 14 13 12 40 40 H 1.09000 * 109.47075 * 60.00674 * 14 13 12 41 41 H 1.09004 * 109.47058 * 300.00351 * 15 14 13 42 42 H 1.08997 * 109.47298 * 59.99578 * 15 14 13 43 43 H 0.97003 * 120.00380 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4442 0.1256 5 1 3.8574 0.8754 1.0081 6 8 4.1394 0.8465 -1.0383 7 6 5.4342 0.2819 -0.8229 8 6 4.0565 2.8628 0.2564 9 7 4.1344 3.7408 -0.6984 10 8 4.5652 4.7904 -0.2693 11 6 4.8098 4.6785 1.0397 12 6 5.3517 5.7531 1.9466 13 6 6.8799 5.6818 1.9656 14 6 7.4300 6.7733 2.8858 15 6 8.9583 6.7024 2.9043 16 6 9.5001 7.7771 3.8112 17 1 8.8223 8.4442 4.3229 18 6 10.8613 7.9092 3.9868 19 7 11.6867 7.0973 3.3633 20 14 11.5330 9.2418 5.1104 21 1 10.4056 10.0162 5.6890 22 1 12.3171 8.6169 6.2058 23 1 12.4101 10.1514 4.3304 24 7 4.4893 3.4544 1.3840 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6055 1.9815 0.8418 31 1 1.7516 1.9297 -0.9314 32 1 5.3553 -0.5533 -0.1268 33 1 5.8385 -0.0725 -1.7711 34 1 6.0968 1.0406 -0.4062 35 1 5.0380 6.7304 1.5797 36 1 4.9685 5.6039 2.9561 37 1 7.1936 4.7045 2.3324 38 1 7.2631 5.8311 0.9561 39 1 7.1164 7.7504 2.5185 40 1 7.0469 6.6245 3.8954 41 1 9.2723 5.7253 3.2713 42 1 9.3411 6.8514 1.8947 43 1 12.6443 7.1905 3.4865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351136123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = -17.335391 kcal Electronic energy + Delta-G solvation = -21512.671887 eV Core-core repulsion = 18174.252959 eV Total energy + Delta-G solvation = -3338.418929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.60874 -38.93052 -36.19966 -35.50153 -34.97349 -33.36760 -32.01935 -30.08937 -29.29560 -26.69829 -25.80244 -25.31328 -23.55321 -22.40513 -21.58215 -20.77492 -20.19619 -18.04697 -17.64657 -17.04353 -16.23620 -15.89536 -15.64962 -15.17318 -15.07456 -14.65373 -14.34502 -13.80748 -13.67245 -13.04520 -12.96338 -12.71609 -12.41910 -12.23252 -12.12062 -11.97780 -11.73925 -11.61988 -11.41786 -11.23327 -11.10838 -11.03889 -10.91702 -10.68091 -10.60001 -10.53743 -10.27721 -9.97101 -9.73544 -9.32862 -9.05274 -8.36499 -6.01158 -4.03668 1.13714 2.11040 2.83172 3.17511 3.30260 3.37889 3.41643 3.52105 4.08384 4.44332 4.45545 4.55575 4.71060 4.86326 4.97947 5.08139 5.09595 5.18067 5.20643 5.24506 5.29692 5.34881 5.40982 5.42797 5.51320 5.55110 5.75276 5.76662 5.84340 5.86207 5.98162 6.00594 6.04703 6.32402 6.65569 6.71214 6.80717 7.08219 7.66335 7.79689 7.98839 8.14767 8.40795 9.03968 9.60647 11.10198 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.002449 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.276794 B =11430.040923 C =11746.639110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.185 3.815 5 H 0.093 0.907 6 O -0.366 6.366 7 C 0.027 3.973 8 C 0.134 3.866 9 N -0.365 5.365 10 O 0.077 5.923 11 C 0.197 3.803 12 C -0.031 4.031 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.483 5.483 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 -12.963 -6.759 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.124 3.876 5 H 0.111 0.889 6 O -0.283 6.283 7 C -0.070 4.070 8 C -0.140 4.140 9 N -0.072 5.072 10 O 0.018 5.982 11 C -0.023 4.023 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.218 5.218 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.009 -13.560 -7.531 25.317 hybrid contribution 0.898 0.881 0.874 1.532 sum -19.111 -12.679 -6.656 23.880 Atomic orbital electron populations 1.21765 0.95494 1.01777 1.01924 1.21469 0.96000 0.95564 1.02734 1.21689 0.90673 0.98699 1.03705 1.20326 0.94036 0.82995 0.90203 0.88923 1.88003 1.32712 1.74506 1.33095 1.22887 0.84154 0.97244 1.02691 1.26499 1.01750 1.00793 0.84982 1.74633 1.16456 0.93249 1.22897 1.85329 1.58540 1.29851 1.24530 1.29180 0.94468 0.94954 0.83713 1.20547 0.97934 0.92483 0.96016 1.21737 0.89924 1.01785 1.01952 1.21632 0.99945 0.95794 0.97232 1.19107 0.88284 0.97190 0.97196 1.21295 0.91620 1.15794 1.27138 0.92559 1.25042 0.97271 0.96211 0.96076 1.69972 1.02784 1.37783 1.42955 0.86543 0.79004 0.81876 0.80610 1.19714 1.21048 1.21038 1.71900 1.17921 1.04915 1.27037 0.92523 0.92706 0.92629 0.90973 0.91859 0.90151 0.90415 0.93338 0.89051 0.93940 0.88005 0.87255 0.91544 0.91669 0.92867 0.92895 0.96596 0.96564 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.89 5.78 -26.73 -0.15 -1.05 16 3 C -0.11 -1.01 4.90 -26.73 -0.13 -1.15 16 4 C 0.18 2.07 2.65 -27.88 -0.07 1.99 16 5 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 6 O -0.37 -4.29 9.99 -35.23 -0.35 -4.64 16 7 C 0.03 0.26 10.80 101.05 1.09 1.35 16 8 C 0.13 1.87 6.82 -156.37 -1.07 0.80 16 9 N -0.37 -5.56 12.16 30.90 0.38 -5.18 16 10 O 0.08 1.13 11.31 18.11 0.20 1.33 16 11 C 0.20 2.70 7.77 -13.05 -0.10 2.60 16 12 C -0.03 -0.37 5.84 -27.89 -0.16 -0.53 16 13 C -0.12 -1.78 5.20 -26.73 -0.14 -1.92 16 14 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 15 C 0.02 0.48 4.97 -27.89 -0.14 0.34 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 N -0.48 -7.05 11.55 -9.87 -0.11 -7.16 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.07 0.57 7.96 -51.93 -0.41 0.15 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.47 7.95 -51.93 -0.41 0.05 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -31.75 363.64 -7.29 -39.04 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -7.54 Total: -5.56 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.06 Total: -13.65 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 1.00 Total: -38.43 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.15 Total: -3.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.75 -7.29 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351136123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.702 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds