Wall clock time and date at job start Tue Mar 31 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.42907 * 113.99648 * 150.00501 * 6 4 3 8 8 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 9 9 N 1.29951 * 126.29116 * 74.69126 * 8 4 3 10 10 O 1.21300 * 110.25104 * 179.84005 * 9 8 4 11 11 C 1.33644 * 109.81054 * 0.42255 * 10 9 8 12 12 C 1.50698 * 126.54888 * 179.75777 * 11 10 9 13 13 C 1.52993 * 109.47312 * 269.97636 * 12 11 10 14 14 C 1.53001 * 109.47460 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47235 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99856 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99888 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46852 * 90.00151 * 20 18 16 22 22 H 1.48500 * 109.47085 * 210.00096 * 20 18 16 23 23 H 1.48500 * 109.47152 * 330.00377 * 20 18 16 24 24 N 1.31129 * 106.89878 * 359.74005 * 11 10 9 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.08998 * 109.46833 * 59.99905 * 7 6 4 33 33 H 1.08995 * 109.46420 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46528 * 300.00034 * 7 6 4 35 35 H 1.09010 * 109.46945 * 29.97726 * 12 11 10 36 36 H 1.09003 * 109.47112 * 149.97183 * 12 11 10 37 37 H 1.09002 * 109.47182 * 299.99612 * 13 12 11 38 38 H 1.09003 * 109.47402 * 59.99725 * 13 12 11 39 39 H 1.08997 * 109.46826 * 300.00290 * 14 13 12 40 40 H 1.09003 * 109.47091 * 59.99469 * 14 13 12 41 41 H 1.09002 * 109.47182 * 299.99548 * 15 14 13 42 42 H 1.09003 * 109.47402 * 59.99660 * 15 14 13 43 43 H 0.97002 * 120.00180 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 5.3064 0.2088 1.0989 8 6 4.0723 2.8578 -0.1245 9 7 4.0684 3.7599 0.8109 10 8 4.5431 4.7964 0.3965 11 6 4.8976 4.6522 -0.8840 12 6 5.5189 5.7035 -1.7670 13 6 4.4155 6.4891 -2.4784 14 6 5.0463 7.5561 -3.3754 15 6 3.9430 8.3413 -4.0873 16 6 4.5643 9.3918 -4.9713 17 1 5.6388 9.4898 -5.0201 18 6 3.7612 10.2277 -5.7177 19 7 2.4528 10.1080 -5.6587 20 14 4.5314 11.5303 -6.8130 21 1 4.7710 10.9624 -8.1640 22 1 3.6134 12.6927 -6.9203 23 1 5.8219 11.9712 -6.2253 24 7 4.6018 3.4211 -1.2250 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.0602 0.9192 0.7593 33 1 5.5984 -0.1961 2.0678 34 1 5.2209 -0.6032 0.3768 35 1 6.1145 6.3837 -1.1581 36 1 6.1588 5.2239 -2.5077 37 1 3.8199 5.8089 -3.0873 38 1 3.7755 6.9687 -1.7377 39 1 5.6422 8.2363 -2.7669 40 1 5.6860 7.0762 -4.1161 41 1 3.3475 7.6608 -4.6959 42 1 3.3029 8.8212 -3.3469 43 1 1.8877 10.6964 -6.1835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351136124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:54 Heat of formation + Delta-G solvation = -17.140048 kcal Electronic energy + Delta-G solvation = -21519.472140 eV Core-core repulsion = 18181.061682 eV Total energy + Delta-G solvation = -3338.410458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.60224 -38.95386 -36.19713 -35.50165 -34.93161 -33.36225 -32.01642 -30.07449 -29.28371 -26.77210 -25.79372 -25.28392 -23.54423 -22.39583 -21.56905 -20.74764 -20.19216 -18.05581 -17.64249 -17.04699 -16.22625 -15.91427 -15.67177 -15.15744 -15.05659 -14.65068 -14.34754 -13.81143 -13.67284 -13.04119 -12.94884 -12.64969 -12.41921 -12.22948 -12.11830 -12.00057 -11.74821 -11.60306 -11.36200 -11.21851 -11.09326 -11.01844 -10.89113 -10.67149 -10.59662 -10.54857 -10.31582 -9.96560 -9.72458 -9.31971 -9.05692 -8.35375 -6.00330 -4.02917 1.14287 2.11499 2.83673 3.13373 3.31703 3.38106 3.41098 3.54601 4.08271 4.44816 4.46637 4.58187 4.75680 4.85842 4.96447 5.01253 5.05927 5.18583 5.21161 5.26253 5.30320 5.35619 5.37580 5.44173 5.55016 5.60195 5.77010 5.81765 5.85176 5.90219 6.01197 6.03469 6.05488 6.33413 6.66259 6.68242 6.81592 7.08998 7.66922 7.80669 7.99653 8.15298 8.41520 9.04505 9.61320 11.11030 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002592 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.074392 B =10800.793528 C =11567.243288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.185 3.815 5 H 0.094 0.906 6 O -0.366 6.366 7 C 0.027 3.973 8 C 0.135 3.865 9 N -0.365 5.365 10 O 0.077 5.923 11 C 0.197 3.803 12 C -0.031 4.031 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.483 5.483 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -20.520 12.685 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.125 3.875 5 H 0.111 0.889 6 O -0.283 6.283 7 C -0.069 4.069 8 C -0.139 4.139 9 N -0.072 5.072 10 O 0.018 5.982 11 C -0.023 4.023 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 N -0.218 5.218 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.302 -20.972 13.353 24.969 hybrid contribution 0.624 0.944 -0.940 1.471 sum 2.926 -20.028 12.414 23.744 Atomic orbital electron populations 1.21762 0.95398 1.01752 1.02098 1.21463 0.96182 0.95531 1.02541 1.21735 0.90731 0.98758 1.03862 1.20301 0.95055 0.83466 0.88674 0.88864 1.88018 1.36865 1.72164 1.31251 1.22882 0.85205 0.95937 1.02881 1.26441 1.01110 1.00499 0.85808 1.74629 1.16123 0.93439 1.23016 1.85331 1.56008 1.30535 1.26374 1.29175 0.95009 0.94176 0.83954 1.20546 0.98871 0.92129 0.95422 1.21739 0.96449 0.98077 0.99146 1.21632 1.00017 0.95720 0.97230 1.19101 0.93178 0.94446 0.95006 1.21259 0.92996 1.16465 1.25222 0.92632 1.25035 0.94828 0.97624 0.97040 1.69964 1.03158 1.39010 1.41379 0.86602 0.79122 0.81341 0.80979 1.20679 1.21250 1.19864 1.71895 1.17626 1.05736 1.26533 0.92556 0.92580 0.92571 0.91911 0.91064 0.90349 0.89960 0.94176 0.89114 0.93375 0.88028 0.87304 0.91486 0.91625 0.92888 0.92921 0.96583 0.96554 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.12 -0.95 5.83 -26.74 -0.16 -1.11 16 3 C -0.11 -1.13 4.90 -26.73 -0.13 -1.26 16 4 C 0.19 2.07 2.66 -27.88 -0.07 2.00 16 5 H 0.09 0.91 7.79 -51.93 -0.40 0.51 16 6 O -0.37 -4.11 9.87 -35.23 -0.35 -4.46 16 7 C 0.03 0.23 10.81 101.05 1.09 1.32 16 8 C 0.14 1.90 7.06 -156.37 -1.10 0.80 16 9 N -0.36 -5.58 12.16 30.90 0.38 -5.20 16 10 O 0.08 1.13 11.31 18.10 0.20 1.34 16 11 C 0.20 2.71 7.77 -13.06 -0.10 2.61 16 12 C -0.03 -0.37 5.84 -27.89 -0.16 -0.53 16 13 C -0.12 -1.78 5.20 -26.73 -0.14 -1.92 16 14 C -0.11 -2.04 5.15 -26.73 -0.14 -2.17 16 15 C 0.02 0.49 4.97 -27.89 -0.14 0.36 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 N -0.48 -7.07 11.55 -9.87 -0.11 -7.18 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -31.81 363.72 -7.32 -39.13 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -7.54 Total: -5.42 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.09 Total: -14.00 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 1.00 Total: -38.52 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.14 Total: -3.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.81 -7.32 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351136124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.989 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds