Wall clock time and date at job start Tue Mar 31 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 C 1.53004 * 109.47236 * 239.99476 * 2 1 3 5 5 C 1.50701 * 109.47051 * 60.00304 * 4 2 1 6 6 H 1.08004 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99910 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00328 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47174 * 59.99801 * 9 7 5 11 11 H 1.48498 * 109.47279 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46958 * 300.00203 * 9 7 5 13 13 C 1.53007 * 109.46917 * 119.99889 * 2 1 3 14 14 N 1.46502 * 109.46906 * 299.99776 * 13 2 1 15 15 C 1.34776 * 119.99736 * 180.02562 * 14 13 2 16 16 O 1.21275 * 120.00203 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99478 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.13322 * 40.52009 * 17 15 14 19 19 C 1.52925 * 109.30143 * 281.03333 * 17 15 14 20 20 C 1.53344 * 108.67454 * 188.93734 * 19 17 15 21 21 C 1.53070 * 108.42534 * 67.52837 * 20 19 17 22 22 C 1.50168 * 109.89584 * 311.10257 * 21 20 19 23 23 O 1.21283 * 118.25154 * 197.60580 * 22 21 20 24 24 N 1.33354 * 123.50750 * 17.57658 * 22 21 20 25 25 H 1.08996 * 109.47396 * 300.00526 * 1 2 3 26 26 H 1.09005 * 109.46894 * 60.00377 * 1 2 3 27 27 H 1.08995 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47296 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46807 * 299.99677 * 3 2 1 30 30 H 1.08996 * 109.47293 * 59.99411 * 3 2 1 31 31 H 1.09001 * 109.47198 * 180.02562 * 4 2 1 32 32 H 1.08995 * 109.47229 * 300.00312 * 4 2 1 33 33 H 0.96993 * 120.00132 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47023 * 179.97438 * 13 2 1 35 35 H 1.08995 * 109.47253 * 59.99869 * 13 2 1 36 36 H 0.96996 * 119.99648 * 0.02562 * 14 13 2 37 37 H 1.08995 * 109.59942 * 69.17977 * 19 17 15 38 38 H 1.08997 * 109.60530 * 308.68947 * 19 17 15 39 39 H 1.09000 * 109.67086 * 307.79748 * 20 19 17 40 40 H 1.08994 * 109.67784 * 187.26631 * 20 19 17 41 41 H 1.09007 * 109.39922 * 190.96855 * 21 20 19 42 42 H 1.09001 * 109.39908 * 71.23432 * 21 20 19 43 43 H 0.97004 * 117.94628 * 177.49432 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4825 -3.7319 8 7 2.6265 -1.5518 -3.8525 9 14 1.2484 0.3984 -5.2572 10 1 1.7445 1.7981 -5.2574 11 1 1.7423 -0.3024 -6.4696 12 1 -0.2366 0.3997 -5.2571 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8776 -0.4907 3.6696 16 8 2.5755 -1.4762 3.7809 17 6 1.3747 0.2195 4.8999 18 1 0.3402 0.5228 4.7396 19 6 2.2318 1.4605 5.1530 20 6 1.8577 2.0451 6.5204 21 6 2.3012 1.0604 7.6052 22 6 1.8313 -0.3239 7.2619 23 8 1.8056 -1.1566 8.1434 24 7 1.4400 -0.6866 6.0398 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 2.8608 -1.8832 -4.7334 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 0.9937 0.7579 2.3563 37 1 2.0430 2.2001 4.3750 38 1 3.2860 1.1837 5.1497 39 1 0.7787 2.1896 6.5749 40 1 2.3639 2.9999 6.6623 41 1 1.8751 1.3605 8.5626 42 1 3.3888 1.0662 7.6767 43 1 1.1868 -1.6125 5.8996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359759462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:08 Heat of formation + Delta-G solvation = -126.062141 kcal Electronic energy + Delta-G solvation = -22554.152657 eV Core-core repulsion = 19211.018983 eV Total energy + Delta-G solvation = -3343.133674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81351 -40.47632 -38.72679 -37.26707 -35.29965 -33.99589 -33.92014 -31.10207 -29.07815 -27.91843 -27.80909 -26.04846 -24.62817 -23.76711 -21.71734 -20.13818 -20.00381 -18.63245 -18.33547 -18.05836 -17.42016 -16.60404 -16.43713 -16.24860 -16.05499 -15.35528 -15.15749 -14.99212 -14.68903 -14.54707 -14.43780 -14.24299 -13.91028 -13.72012 -13.02846 -12.83168 -12.74442 -12.62118 -12.53122 -12.29391 -12.20675 -12.01111 -11.97457 -11.85402 -11.50841 -11.36302 -11.03128 -10.87462 -10.72033 -10.49914 -10.19010 -10.08561 -8.13267 -6.21247 1.43695 1.45453 1.46605 1.50712 1.52739 1.98221 2.39270 2.46365 3.21498 3.53653 3.59420 3.69531 3.88826 3.98596 4.08655 4.10976 4.25236 4.27742 4.55558 4.70967 4.74121 4.79678 4.82601 4.86180 4.97875 5.00680 5.11088 5.12707 5.16872 5.31570 5.39367 5.47250 5.53988 5.57152 5.58958 5.62195 5.83194 5.91505 6.24323 6.31057 6.53088 6.94684 7.09852 7.19744 7.46991 8.99094 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042651 B = 0.003065 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.337582 B = 9133.884728 C = 9439.940966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.266 1.266 13 C 0.141 3.859 14 N -0.697 5.697 15 C 0.495 3.505 16 O -0.585 6.585 17 C 0.131 3.869 18 H 0.139 0.861 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.134 4.134 22 C 0.516 3.484 23 O -0.612 6.612 24 N -0.702 5.702 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.078 0.922 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.259 0.741 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.418 0.582 37 H 0.124 0.876 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 13.971 18.464 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.191 1.191 13 C 0.017 3.983 14 N -0.350 5.350 15 C 0.281 3.719 16 O -0.465 6.465 17 C 0.023 3.977 18 H 0.156 0.844 19 C -0.167 4.167 20 C -0.148 4.148 21 C -0.174 4.174 22 C 0.306 3.694 23 O -0.494 6.494 24 N -0.352 5.352 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.003 0.997 32 H 0.001 0.999 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.926 13.010 18.881 23.452 hybrid contribution -0.016 -0.874 -1.559 1.788 sum -4.942 12.136 17.321 21.719 Atomic orbital electron populations 1.21711 0.93419 1.00910 1.01957 1.20713 0.96803 0.96507 0.92488 1.21706 0.99898 0.94297 1.02019 1.18979 0.94199 0.94121 0.92589 1.21587 1.30379 1.12123 0.91013 0.90678 1.25957 0.95689 0.95840 1.02792 1.70117 1.38866 1.25066 1.24127 0.85610 0.78978 0.78818 0.78306 1.18970 1.21980 1.19107 1.21213 0.97816 0.95340 0.83962 1.45872 1.52740 1.32065 1.04341 1.21455 0.80122 0.84437 0.85871 1.90746 1.39725 1.28711 1.87311 1.21179 1.03781 0.90534 0.82221 0.84377 1.21998 0.99102 0.94475 1.01136 1.21679 1.03721 0.98757 0.90615 1.21764 1.03896 0.89101 1.02595 1.21013 0.75149 0.92223 0.81044 1.90740 1.56966 1.54471 1.47240 1.45421 1.66786 1.14200 1.08759 0.90489 0.92635 0.94738 0.94519 0.92690 0.90315 0.99749 0.99908 0.93237 0.93616 0.93829 0.74256 0.85787 0.91764 0.88992 0.87160 0.86767 0.87524 0.77037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.05 71.98 0.58 -3.08 16 2 C -0.06 -2.22 0.54 -52.18 -0.03 -2.24 16 3 C -0.12 -3.56 8.05 71.98 0.58 -2.98 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.51 -26.53 7.65 25.60 0.20 -26.33 16 6 H 0.08 3.58 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 9 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.14 4.53 4.56 86.38 0.39 4.93 16 14 N -0.70 -15.09 4.96 -463.06 -2.30 -17.39 16 15 C 0.50 11.65 6.99 87.66 0.61 12.26 16 16 O -0.59 -20.46 16.37 -3.01 -0.05 -20.51 16 17 C 0.13 1.86 3.46 44.36 0.15 2.01 16 18 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 19 C -0.13 -1.15 5.29 30.68 0.16 -0.98 16 20 C -0.11 -0.59 6.03 30.73 0.19 -0.40 16 21 C -0.13 -1.60 6.03 29.70 0.18 -1.42 16 22 C 0.52 11.48 7.71 87.71 0.68 12.16 16 23 O -0.61 -19.79 17.78 -3.04 -0.05 -19.84 16 24 N -0.70 -14.39 4.79 -450.22 -2.16 -16.55 16 25 H 0.08 1.55 6.86 -2.39 -0.02 1.54 16 26 H 0.05 1.82 6.62 -2.38 -0.02 1.80 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.77 6.62 -2.38 -0.02 1.75 16 30 H 0.08 1.51 6.86 -2.39 -0.02 1.49 16 31 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 5.82 6.16 -92.71 -0.57 5.24 16 37 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.84 8.10 -2.39 -0.02 0.83 16 39 H 0.09 0.27 8.13 -2.39 -0.02 0.25 16 40 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.39 9.54 8.44 -92.71 -0.78 8.76 16 Total: -1.00 -78.54 343.24 1.69 -76.85 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.34 Total: 13.13 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.27 Total: -3.94 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -4.17 Total: -90.18 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.10 Total: -40.35 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -78.54 1.69 -76.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.212 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds