Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99915 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99586 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99806 * 180.02562 * 15 13 12 17 17 H 1.09003 * 110.45742 * 327.60514 * 16 15 13 18 18 C 1.54507 * 110.51352 * 90.35590 * 16 15 13 19 19 C 1.54478 * 104.06353 * 118.64456 * 18 16 15 20 20 O 1.44423 * 104.80051 * 336.02128 * 19 18 16 21 21 C 1.44425 * 105.27591 * 40.51510 * 20 19 18 22 22 H 1.08999 * 110.37404 * 78.31905 * 21 20 19 23 23 C 1.52999 * 110.46172 * 200.60594 * 21 20 19 24 24 C 1.52998 * 117.50127 * 4.18316 * 23 21 20 25 25 C 1.52995 * 117.50145 * 295.52117 * 23 21 20 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 34 34 H 0.96995 * 119.99967 * 359.97438 * 15 13 12 35 35 H 1.09000 * 110.51099 * 237.29196 * 18 16 15 36 36 H 1.09009 * 110.51054 * 359.97438 * 18 16 15 37 37 H 1.08994 * 110.36866 * 217.18864 * 19 18 16 38 38 H 1.09005 * 110.36937 * 94.85366 * 19 18 16 39 39 H 1.09002 * 115.54741 * 149.84943 * 23 21 20 40 40 H 1.08994 * 117.50119 * 359.97438 * 24 23 21 41 41 H 1.09002 * 117.49640 * 145.02234 * 24 23 21 42 42 H 1.09007 * 117.49945 * 214.98133 * 25 23 21 43 43 H 1.08999 * 117.49886 * 359.97336 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7873 -7.5934 -0.0280 15 7 2.8585 -8.3958 -0.0303 16 6 2.3701 -9.7769 -0.0370 17 1 1.4294 -9.8510 0.5087 18 6 2.1999 -10.2841 -1.4865 19 6 3.1723 -11.4806 -1.5822 20 8 4.1638 -11.2327 -0.5617 21 6 3.4251 -10.7271 0.5717 22 1 2.9380 -11.5449 1.1026 23 6 4.3528 -9.9587 1.5150 24 6 5.8074 -9.7725 1.0787 25 6 5.4656 -10.7470 2.2085 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8531 -5.0490 0.8724 32 1 0.8537 -5.0406 -0.9075 33 1 3.3857 -5.9235 -0.0201 34 1 3.8121 -8.2185 -0.0291 35 1 1.1743 -10.6106 -1.6589 36 1 2.4787 -9.5069 -2.1982 37 1 3.6400 -11.5116 -2.5662 38 1 2.6462 -12.4140 -1.3815 39 1 3.8873 -9.1471 2.0741 40 1 6.1036 -10.1977 0.1198 41 1 6.2990 -8.8385 1.3512 42 1 5.7325 -10.4537 3.2239 43 1 5.5366 -11.8131 1.9932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367007131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = -63.117669 kcal Electronic energy + Delta-G solvation = -22015.533658 eV Core-core repulsion = 18675.129461 eV Total energy + Delta-G solvation = -3340.404197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70756 -39.21507 -36.77167 -35.53627 -34.43454 -33.29491 -31.50663 -30.58494 -28.99997 -26.53265 -24.03318 -23.13739 -22.66716 -21.66236 -20.95867 -20.55389 -20.05578 -18.27713 -17.11374 -16.36865 -16.28548 -15.86655 -15.53583 -15.46097 -14.94954 -14.56743 -14.35317 -14.03790 -13.86592 -13.75146 -12.72891 -12.28630 -12.22987 -12.11647 -11.83057 -11.78472 -11.67511 -11.65022 -11.24347 -10.88135 -10.71438 -10.61815 -10.57020 -10.49426 -10.10411 -10.05405 -9.85007 -9.43490 -9.19558 -9.13210 -8.60642 -8.36521 -6.01341 -4.04484 2.78282 3.32200 3.33103 3.36971 3.38845 3.39830 3.53184 4.12081 4.35033 4.36910 4.45814 4.62214 4.66462 4.72378 4.82368 4.97458 5.09310 5.18052 5.34317 5.34678 5.39783 5.42439 5.59360 5.62414 5.73006 5.79193 5.82232 5.84109 5.96389 6.19091 6.38247 6.53447 6.54623 6.63036 6.81687 7.02915 7.09361 7.64100 7.77260 7.97551 8.15979 8.38487 8.75646 9.02045 9.59550 11.09948 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.002720 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.034807 B =10292.450243 C =10860.567023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.699 3.301 14 O -0.594 6.594 15 N -0.738 5.738 16 C 0.141 3.859 17 H 0.105 0.895 18 C -0.168 4.168 19 C 0.045 3.955 20 O -0.367 6.367 21 C 0.097 3.903 22 H 0.085 0.915 23 C -0.160 4.160 24 C -0.168 4.168 25 C -0.173 4.173 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -24.645 0.443 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.399 3.601 14 O -0.472 6.472 15 N -0.395 5.395 16 C 0.034 3.966 17 H 0.123 0.877 18 C -0.208 4.208 19 C -0.031 4.031 20 O -0.287 6.287 21 C 0.039 3.961 22 H 0.103 0.897 23 C -0.178 4.178 24 C -0.204 4.204 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.976 -24.728 0.432 26.311 hybrid contribution 1.044 1.177 -0.054 1.574 sum 10.020 -23.552 0.378 25.597 Atomic orbital electron populations 1.69958 1.06060 1.26797 1.50473 1.25030 0.94858 0.99285 0.95276 0.86642 0.79560 0.83099 0.78581 1.20253 1.21268 1.20245 1.21175 0.92953 0.90974 1.51057 0.92708 1.19018 0.93842 0.90785 0.97670 1.21889 0.99786 0.93348 1.00816 1.21507 0.91283 0.84148 1.01853 1.45392 1.10449 1.04446 1.79245 1.16048 0.85314 0.80830 0.77872 1.90910 1.14136 1.84118 1.58032 1.45146 1.09146 1.04376 1.80849 1.22041 0.98028 0.80743 0.95761 0.87746 1.23447 1.00826 0.98741 0.97739 1.23415 0.89983 0.97087 0.92656 1.89135 1.30444 1.85117 1.23960 1.22735 0.91037 0.94660 0.87693 0.89685 1.22285 0.90728 1.02690 1.02097 1.22947 0.96312 1.01172 1.00012 1.22950 1.02545 0.98102 0.97407 0.92864 0.96260 0.96262 0.92789 0.92775 0.91970 0.91983 0.77338 0.76644 0.89703 0.89909 0.88917 0.92074 0.86261 0.87584 0.88790 0.88760 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 11 C 0.14 2.42 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -10.77 5.56 -65.23 -0.36 -11.14 16 13 C 0.70 10.58 8.57 -86.91 -0.74 9.83 16 14 O -0.59 -11.44 15.99 5.29 0.08 -11.36 16 15 N -0.74 -8.11 4.15 -57.14 -0.24 -8.35 16 16 C 0.14 1.40 3.33 -66.37 -0.22 1.18 16 17 H 0.10 1.17 7.55 -51.93 -0.39 0.78 16 18 C -0.17 -1.50 6.88 -25.16 -0.17 -1.67 16 19 C 0.05 0.33 7.63 37.93 0.29 0.62 16 20 O -0.37 -3.28 9.79 -35.23 -0.34 -3.62 16 21 C 0.10 0.80 3.59 -25.96 -0.09 0.71 16 22 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 23 C -0.16 -1.27 4.20 -90.62 -0.38 -1.65 16 24 C -0.17 -1.26 9.67 -26.70 -0.26 -1.52 16 25 C -0.17 -1.25 10.25 -26.70 -0.27 -1.53 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.61 8.49 -40.82 -0.35 4.26 16 34 H 0.40 3.67 7.32 -40.82 -0.30 3.37 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.84 7.97 -51.92 -0.41 0.43 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.12 1.02 7.71 -51.93 -0.40 0.62 16 40 H 0.11 0.89 7.07 -51.93 -0.37 0.52 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -32.63 352.25 -9.66 -42.30 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.26 Total: 3.62 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.57 Total: -7.08 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.14 Total: -45.65 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.26 Total: -14.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.63 -9.66 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367007131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.822 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds