Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 112.78910 * 2 1 4 4 C 1.53647 * 113.53438 * 130.96134 * 2 1 3 5 5 H 1.08996 * 113.53774 * 335.36157 * 4 2 1 6 6 N 1.46507 * 113.52959 * 204.79555 * 4 2 1 7 7 C 1.34769 * 120.00053 * 156.28419 * 6 4 2 8 8 O 1.21583 * 120.00137 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99920 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00199 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.53735 * 87.65137 * 90.08299 * 4 2 1 21 21 H 1.09003 * 116.36674 * 265.52712 * 20 4 2 22 22 C 1.56247 * 111.98238 * 127.14614 * 20 4 2 23 23 C 1.54457 * 104.36020 * 266.67483 * 22 20 4 24 24 O 1.44393 * 104.80578 * 24.87537 * 23 22 20 25 25 C 1.44249 * 105.40416 * 319.42040 * 24 23 22 26 26 H 1.09001 * 114.90102 * 270.15816 * 25 24 23 27 27 H 1.09002 * 109.47259 * 289.04067 * 1 2 3 28 28 H 1.08999 * 109.47180 * 49.03940 * 1 2 3 29 29 H 1.09000 * 109.47140 * 169.04255 * 1 2 3 30 30 H 1.08996 * 109.47206 * 190.95968 * 3 2 1 31 31 H 1.09001 * 109.47722 * 310.95988 * 3 2 1 32 32 H 1.09000 * 109.47109 * 70.95927 * 3 2 1 33 33 H 0.97000 * 119.99599 * 336.27584 * 6 4 2 34 34 H 0.97000 * 120.00317 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.47334 * 60.00095 * 10 9 7 36 36 H 1.08999 * 109.47608 * 300.00432 * 10 9 7 37 37 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 38 38 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 39 39 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.75473 * 148.25023 * 22 20 4 41 41 H 1.09001 * 111.13397 * 25.78333 * 22 20 4 42 42 H 1.08998 * 110.37001 * 266.04320 * 23 22 20 43 43 H 1.09000 * 110.36976 * 143.71119 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1227 1.4105 0.0000 4 6 2.1436 -0.9235 1.0638 5 1 1.4846 -1.1082 1.9121 6 7 3.4951 -0.5304 1.4703 7 6 3.9724 -0.9046 2.6738 8 8 3.2812 -1.5681 3.4224 9 7 5.2159 -0.5434 3.0475 10 6 5.7346 -0.9498 4.3560 11 6 7.1569 -0.4133 4.5299 12 6 7.6906 -0.8318 5.8756 13 1 7.0767 -1.4211 6.5406 14 6 8.9624 -0.4616 6.2584 15 7 9.7098 0.2564 5.4488 16 14 9.6238 -0.9797 7.9268 17 1 9.2868 0.0559 8.9362 18 1 9.0115 -2.2738 8.3217 19 1 11.0987 -1.1333 7.8486 20 6 2.1204 -2.0450 0.0125 21 1 1.2509 -2.7021 0.0248 22 6 3.5196 -2.7205 -0.1529 23 6 4.1817 -1.9503 -1.3165 24 8 3.5377 -0.6580 -1.3174 25 6 2.1433 -0.9246 -1.0619 26 1 1.5377 -1.0937 -1.9522 27 1 -0.3634 0.3353 0.9714 28 1 -0.3633 0.6737 -0.7760 29 1 -0.3633 -1.0089 -0.1953 30 1 3.1935 1.3547 -0.1954 31 1 1.6424 2.0065 -0.7760 32 1 1.9543 1.8754 0.9714 33 1 4.0464 -0.0009 0.8731 34 1 5.7672 -0.0138 2.4505 35 1 5.7459 -2.0378 4.4205 36 1 5.0958 -0.5459 5.1415 37 1 7.1451 0.6748 4.4657 38 1 7.7959 -0.8168 3.7445 39 1 10.6044 0.5173 5.7182 40 1 3.3928 -3.7712 -0.4138 41 1 4.1131 -2.6228 0.7562 42 1 4.0035 -2.4637 -2.2613 43 1 5.2516 -1.8410 -1.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408183605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -57.803653 kcal Electronic energy + Delta-G solvation = -23061.608777 eV Core-core repulsion = 19721.435013 eV Total energy + Delta-G solvation = -3340.173764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70756 -39.05842 -36.35178 -34.75865 -33.35905 -32.72082 -31.87450 -29.48559 -28.99261 -27.48687 -25.30110 -24.10275 -23.22579 -21.24508 -20.77978 -20.31485 -18.95448 -17.88414 -16.59837 -16.27710 -16.16376 -15.82421 -15.20201 -15.05973 -14.50128 -14.45007 -13.85889 -13.61397 -13.57160 -13.22679 -12.88585 -12.86329 -12.56047 -12.38347 -12.25373 -11.97361 -11.32506 -11.20672 -11.16317 -11.08131 -10.99667 -10.62637 -10.58638 -10.30696 -10.21490 -9.88791 -9.70794 -9.51615 -9.23476 -8.89344 -8.45811 -8.20444 -6.07156 -4.09668 3.04822 3.31080 3.37132 3.41620 3.47168 3.59672 4.01003 4.31572 4.42865 4.53004 4.68982 4.77220 4.85419 4.92622 5.00127 5.11646 5.16665 5.29947 5.38011 5.43792 5.48609 5.55954 5.65004 5.70560 5.72206 5.81874 5.87904 6.04248 6.09237 6.20107 6.35361 6.42837 6.60334 6.78486 6.83531 7.04942 7.35274 7.60795 7.66231 7.92286 8.28986 8.50740 8.95601 9.06327 9.54940 11.04512 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030281 B = 0.003350 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.445400 B = 8355.346705 C = 8530.519791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.165 3.835 5 H 0.102 0.898 6 N -0.726 5.726 7 C 0.699 3.301 8 O -0.600 6.600 9 N -0.739 5.739 10 C 0.141 3.859 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.272 1.272 19 H -0.286 1.286 20 C -0.155 4.155 21 H 0.116 0.884 22 C -0.143 4.143 23 C 0.049 3.951 24 O -0.357 6.357 25 C 0.055 3.945 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.337 -1.164 -16.818 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C -0.190 4.190 4 C 0.057 3.943 5 H 0.120 0.880 6 N -0.383 5.383 7 C 0.399 3.601 8 O -0.479 6.479 9 N -0.392 5.392 10 C 0.018 3.982 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.197 1.197 19 H -0.212 1.212 20 C -0.176 4.176 21 H 0.134 0.866 22 C -0.181 4.181 23 C -0.027 4.027 24 O -0.276 6.276 25 C -0.003 4.003 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.639 -1.486 -16.120 23.215 hybrid contribution 0.974 -0.018 0.267 1.010 sum -15.665 -1.504 -15.854 22.338 Atomic orbital electron populations 1.21523 0.91714 1.02260 1.02744 1.22242 0.95996 0.95713 0.95039 1.21563 1.01499 0.94192 1.01715 1.21544 0.84102 0.92789 0.95893 0.87962 1.44872 1.16321 1.59165 1.17905 1.16070 0.82365 0.80221 0.81474 1.90877 1.58734 1.44596 1.53645 1.45534 1.14138 1.58106 1.21456 1.21570 0.97034 0.98995 0.80569 1.19321 0.88626 0.96780 0.97730 1.21055 0.99571 1.33945 1.01320 0.92244 1.24996 0.96860 0.95012 0.97443 1.69962 1.09815 1.37355 1.36210 0.86513 0.77957 0.79125 0.83968 1.20572 1.19721 1.21201 1.24913 0.98498 0.96465 0.97689 0.86590 1.23098 0.95614 0.99499 0.99914 1.23464 0.98159 0.83707 0.97372 1.88967 1.18589 1.27320 1.92716 1.24207 0.84264 0.96021 0.95785 0.89382 0.91429 0.91794 0.92083 0.91506 0.92579 0.92283 0.76318 0.77434 0.92866 0.92853 0.95983 0.96000 0.92887 0.91166 0.89744 0.92467 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.08 37.16 0.34 -0.55 16 2 C -0.09 -0.81 1.31 -153.87 -0.20 -1.02 16 3 C -0.13 -1.26 8.45 37.16 0.31 -0.95 16 4 C 0.16 1.94 3.65 -67.21 -0.24 1.70 16 5 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 6 N -0.73 -9.79 3.14 -57.97 -0.18 -9.97 16 7 C 0.70 12.43 7.73 -86.93 -0.67 11.76 16 8 O -0.60 -12.95 15.96 5.29 0.08 -12.87 16 9 N -0.74 -13.39 5.56 -65.23 -0.36 -13.76 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 C -0.16 -1.55 4.84 -87.31 -0.42 -1.97 16 21 H 0.12 0.97 8.04 -51.93 -0.42 0.55 16 22 C -0.14 -1.53 6.25 -24.22 -0.15 -1.68 16 23 C 0.05 0.47 7.61 37.92 0.29 0.76 16 24 O -0.36 -3.82 8.56 -35.23 -0.30 -4.12 16 25 C 0.06 0.51 4.67 -25.25 -0.12 0.39 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.07 0.70 5.72 -51.93 -0.30 0.40 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 4.93 5.92 -40.82 -0.24 4.69 16 34 H 0.39 6.26 8.49 -40.82 -0.35 5.92 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -31.89 339.58 -8.40 -40.30 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.03 Total: 6.01 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.64 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.19 Total: -49.30 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.22 Total: -16.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.89 -8.40 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408183605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.508 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds