Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 112.78910 * 2 1 4 4 C 1.53647 * 113.53438 * 130.96134 * 2 1 3 5 5 H 1.08996 * 113.53774 * 335.36157 * 4 2 1 6 6 N 1.46507 * 113.52959 * 204.79555 * 4 2 1 7 7 C 1.34769 * 120.00053 * 156.28419 * 6 4 2 8 8 O 1.21583 * 120.00137 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99920 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00199 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.53735 * 87.65137 * 90.08299 * 4 2 1 21 21 H 1.09003 * 116.36674 * 265.52712 * 20 4 2 22 22 C 1.56247 * 111.98238 * 127.14614 * 20 4 2 23 23 C 1.54457 * 104.36020 * 266.67483 * 22 20 4 24 24 O 1.44393 * 104.80578 * 24.87537 * 23 22 20 25 25 C 1.44249 * 105.40416 * 319.42040 * 24 23 22 26 26 H 1.09001 * 114.90102 * 270.15816 * 25 24 23 27 27 H 1.09002 * 109.47259 * 289.04067 * 1 2 3 28 28 H 1.08999 * 109.47180 * 49.03940 * 1 2 3 29 29 H 1.09000 * 109.47140 * 169.04255 * 1 2 3 30 30 H 1.08996 * 109.47206 * 190.95968 * 3 2 1 31 31 H 1.09001 * 109.47722 * 310.95988 * 3 2 1 32 32 H 1.09000 * 109.47109 * 70.95927 * 3 2 1 33 33 H 0.97000 * 119.99599 * 336.27584 * 6 4 2 34 34 H 0.97000 * 120.00317 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.47334 * 60.00095 * 10 9 7 36 36 H 1.08999 * 109.47608 * 300.00432 * 10 9 7 37 37 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 38 38 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 39 39 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.75473 * 148.25023 * 22 20 4 41 41 H 1.09001 * 111.13397 * 25.78333 * 22 20 4 42 42 H 1.08998 * 110.37001 * 266.04320 * 23 22 20 43 43 H 1.09000 * 110.36976 * 143.71119 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1227 1.4105 0.0000 4 6 2.1436 -0.9235 1.0638 5 1 1.4846 -1.1082 1.9121 6 7 3.4951 -0.5304 1.4703 7 6 3.9724 -0.9046 2.6738 8 8 3.2812 -1.5681 3.4224 9 7 5.2159 -0.5434 3.0475 10 6 5.7346 -0.9498 4.3560 11 6 7.1569 -0.4133 4.5299 12 6 7.6906 -0.8318 5.8756 13 1 7.0767 -1.4211 6.5406 14 6 8.9624 -0.4616 6.2584 15 7 9.7098 0.2564 5.4488 16 14 9.6238 -0.9797 7.9268 17 1 9.2868 0.0559 8.9362 18 1 9.0115 -2.2738 8.3217 19 1 11.0987 -1.1333 7.8486 20 6 2.1204 -2.0450 0.0125 21 1 1.2509 -2.7021 0.0248 22 6 3.5196 -2.7205 -0.1529 23 6 4.1817 -1.9503 -1.3165 24 8 3.5377 -0.6580 -1.3174 25 6 2.1433 -0.9246 -1.0619 26 1 1.5377 -1.0937 -1.9522 27 1 -0.3634 0.3353 0.9714 28 1 -0.3633 0.6737 -0.7760 29 1 -0.3633 -1.0089 -0.1953 30 1 3.1935 1.3547 -0.1954 31 1 1.6424 2.0065 -0.7760 32 1 1.9543 1.8754 0.9714 33 1 4.0464 -0.0009 0.8731 34 1 5.7672 -0.0138 2.4505 35 1 5.7459 -2.0378 4.4205 36 1 5.0958 -0.5459 5.1415 37 1 7.1451 0.6748 4.4657 38 1 7.7959 -0.8168 3.7445 39 1 10.6044 0.5173 5.7182 40 1 3.3928 -3.7712 -0.4138 41 1 4.1131 -2.6228 0.7562 42 1 4.0035 -2.4637 -2.2613 43 1 5.2516 -1.8410 -1.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408183605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -78.850106 kcal Electronic energy + Delta-G solvation = -23062.521420 eV Core-core repulsion = 19721.435013 eV Total energy + Delta-G solvation = -3341.086407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.59220 -40.47632 -37.22196 -36.51025 -34.88346 -34.37613 -32.79286 -31.29181 -29.82538 -28.17782 -26.92735 -25.45001 -23.97880 -22.97996 -22.10827 -21.41232 -20.01615 -19.10516 -18.44256 -17.45798 -17.02673 -16.97079 -16.49403 -16.44037 -16.08609 -15.64710 -15.21928 -15.04647 -14.54304 -14.34843 -14.24270 -14.03240 -13.68154 -13.22008 -13.19699 -13.01080 -12.94232 -12.76367 -12.52246 -12.26644 -12.12085 -11.94070 -11.87537 -11.67600 -11.50421 -11.42685 -11.20360 -11.02273 -10.60543 -10.46893 -10.24493 -9.67440 -8.23974 -6.34454 1.41838 1.42653 1.53994 1.75155 2.15629 2.41403 2.70849 3.10783 3.20736 3.32108 3.60805 3.69419 3.93930 4.12664 4.17535 4.24016 4.38990 4.42276 4.45688 4.51294 4.58758 4.71908 4.81960 4.83092 4.85346 4.87407 4.96143 5.01917 5.12273 5.13164 5.19338 5.31221 5.39210 5.44413 5.51062 5.58632 5.61455 5.78772 5.93813 6.07967 6.17175 6.78619 7.12865 7.34882 7.61589 8.88023 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030281 B = 0.003350 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.445400 B = 8355.346705 C = 8530.519791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.133 4.133 4 C 0.143 3.857 5 H 0.082 0.918 6 N -0.706 5.706 7 C 0.700 3.300 8 O -0.638 6.638 9 N -0.735 5.735 10 C 0.163 3.837 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.266 1.266 19 H -0.279 1.279 20 C -0.151 4.151 21 H 0.136 0.864 22 C -0.146 4.146 23 C 0.051 3.949 24 O -0.373 6.373 25 C 0.062 3.938 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.408 0.592 34 H 0.404 0.596 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.358 -1.407 -17.992 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.190 4.190 4 C 0.036 3.964 5 H 0.100 0.900 6 N -0.362 5.362 7 C 0.400 3.600 8 O -0.521 6.521 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.013 4.013 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.190 1.190 19 H -0.205 1.205 20 C -0.171 4.171 21 H 0.154 0.846 22 C -0.184 4.184 23 C -0.025 4.025 24 O -0.292 6.292 25 C 0.005 3.995 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.246 0.754 34 H 0.239 0.761 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.678 -1.707 -17.352 24.830 hybrid contribution 1.263 0.072 0.585 1.394 sum -16.415 -1.636 -16.767 23.521 Atomic orbital electron populations 1.21550 0.89770 1.03576 1.03129 1.22270 0.97320 0.94912 0.93426 1.21560 1.01027 0.94682 1.01728 1.21864 0.82671 0.95532 0.96299 0.90034 1.44713 1.17088 1.58141 1.16262 1.16127 0.81732 0.79813 0.82305 1.90845 1.59639 1.46404 1.55165 1.45238 1.14717 1.58488 1.20512 1.21052 0.95057 0.97976 0.82089 1.19119 0.90098 0.95654 0.96422 1.21458 1.00216 1.34310 1.02509 0.92291 1.25879 0.97065 0.94832 1.01389 1.70066 1.10260 1.38160 1.38131 0.85430 0.77396 0.79000 0.79138 1.19747 1.19025 1.20471 1.24972 0.98826 0.96453 0.96875 0.84599 1.23078 0.95688 1.00713 0.98918 1.23506 0.97884 0.83334 0.97772 1.88955 1.19504 1.27946 1.92790 1.24294 0.83874 0.95007 0.96364 0.86919 0.91924 0.90137 0.90768 0.92599 0.90966 0.93253 0.75419 0.76112 0.93881 0.93936 0.97439 0.97369 0.92542 0.89869 0.93102 0.90372 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.08 71.98 0.65 -0.77 16 2 C -0.08 -1.29 1.31 -51.77 -0.07 -1.36 16 3 C -0.13 -2.34 8.45 71.98 0.61 -1.73 16 4 C 0.14 3.30 3.65 45.46 0.17 3.46 16 5 H 0.08 2.24 7.44 -2.39 -0.02 2.22 16 6 N -0.71 -19.17 3.14 -455.59 -1.43 -20.60 16 7 C 0.70 25.51 7.73 179.06 1.38 26.90 16 8 O -0.64 -28.38 15.96 -3.98 -0.06 -28.44 16 9 N -0.74 -27.35 5.56 -478.55 -2.66 -30.01 16 10 C 0.16 7.32 5.61 86.38 0.48 7.80 16 11 C 0.02 1.27 5.09 29.85 0.15 1.43 16 12 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 16 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 C -0.15 -2.74 4.84 -8.65 -0.04 -2.78 16 21 H 0.14 1.92 8.04 -2.39 -0.02 1.90 16 22 C -0.15 -2.96 6.25 32.22 0.20 -2.76 16 23 C 0.05 0.90 7.61 72.48 0.55 1.45 16 24 O -0.37 -7.26 8.56 -148.98 -1.28 -8.53 16 25 C 0.06 0.98 4.67 31.56 0.15 1.13 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 30 H 0.06 1.10 5.72 -2.39 -0.01 1.09 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 10.00 5.92 -92.71 -0.55 9.45 16 34 H 0.40 13.16 8.49 -92.71 -0.79 12.37 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.39 6.34 -2.39 -0.02 1.37 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -68.92 339.58 1.49 -67.43 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.32 Total: 25.86 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.93 Total: 2.81 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.81 Total: -105.22 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.34 Total: -36.97 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.92 1.49 -67.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408183605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.415 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds