Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 113.18101 * 2 1 4 4 C 1.55636 * 114.06420 * 132.61108 * 2 1 3 5 5 H 1.08991 * 114.05938 * 323.64891 * 4 2 1 6 6 N 1.46507 * 114.05791 * 191.47643 * 4 2 1 7 7 C 1.34775 * 119.99847 * 157.92740 * 6 4 2 8 8 O 1.21587 * 119.99648 * 0.02562 * 7 6 4 9 9 N 1.34769 * 120.00187 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00241 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46949 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00167 * 359.72205 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47405 * 60.00219 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 19 19 C 1.50570 * 84.46817 * 77.56634 * 4 2 1 20 20 H 1.09002 * 113.16290 * 282.01844 * 19 4 2 21 21 C 1.51848 * 124.09652 * 139.20727 * 19 4 2 22 22 C 1.54388 * 105.22669 * 203.41007 * 21 19 4 23 23 C 1.52406 * 112.06667 * 53.98016 * 22 21 19 24 24 O 1.44158 * 112.91423 * 309.97315 * 23 22 21 25 25 C 1.40849 * 109.95048 * 56.65058 * 24 23 22 26 26 H 1.08997 * 111.48319 * 53.36023 * 25 24 23 27 27 H 1.08999 * 109.47356 * 287.39086 * 1 2 3 28 28 H 1.08994 * 109.47131 * 47.39368 * 1 2 3 29 29 H 1.09007 * 109.46996 * 167.39006 * 1 2 3 30 30 H 1.09005 * 109.47406 * 192.61055 * 3 2 1 31 31 H 1.09003 * 109.47273 * 312.60860 * 3 2 1 32 32 H 1.09000 * 109.47622 * 72.60859 * 3 2 1 33 33 H 0.96996 * 120.00112 * 337.93341 * 6 4 2 34 34 H 0.97010 * 119.99849 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47175 * 60.00333 * 10 9 7 36 36 H 1.09001 * 109.47297 * 299.99840 * 10 9 7 37 37 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 38 38 H 1.08994 * 110.11842 * 84.54313 * 21 19 4 39 39 H 1.09003 * 110.50994 * 322.47725 * 21 19 4 40 40 H 1.09004 * 108.96239 * 293.31797 * 22 21 19 41 41 H 1.08996 * 108.96466 * 174.65239 * 22 21 19 42 42 H 1.09004 * 108.79219 * 189.09474 * 23 22 21 43 43 H 1.08994 * 108.79409 * 70.86640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1322 1.4064 0.0000 4 6 2.1646 -0.9621 1.0459 5 1 1.6139 -1.0239 1.9844 6 7 3.6052 -0.7735 1.2340 7 6 4.1963 -1.1889 2.3717 8 8 3.5340 -1.7206 3.2418 9 7 5.5216 -1.0159 2.5446 10 6 6.1643 -1.4680 3.7811 11 6 7.6381 -1.1586 3.7234 12 1 8.0552 -0.6778 2.8509 13 6 8.4548 -1.4941 4.7824 14 7 7.9478 -2.0845 5.8425 15 14 10.2815 -1.1100 4.7111 16 1 10.4739 0.3545 4.5597 17 1 10.9329 -1.5684 5.9645 18 1 10.8901 -1.8116 3.5524 19 6 1.8108 -2.0386 0.0543 20 1 0.7553 -2.3100 0.0745 21 6 2.7116 -3.2130 -0.2847 22 6 2.2651 -3.6744 -1.6888 23 6 2.2773 -2.5320 -2.6976 24 8 1.5851 -1.3590 -2.2255 25 6 2.1417 -0.9313 -1.0044 26 1 3.2202 -0.7949 -1.0834 27 1 -0.3634 0.3071 0.9807 28 1 -0.3633 0.6956 -0.7563 29 1 -0.3633 -1.0029 -0.2244 30 1 3.1972 1.3457 -0.2244 31 1 1.6357 2.0143 -0.7564 32 1 1.9929 1.8614 0.9806 33 1 4.1336 -0.3496 0.5398 34 1 6.0501 -0.5920 1.8503 35 1 6.0224 -2.5430 3.8923 36 1 5.7183 -0.9527 4.6318 37 1 8.5225 -2.3209 6.5873 38 1 2.5705 -4.0151 0.4397 39 1 3.7557 -2.9006 -0.3034 40 1 1.2550 -4.0790 -1.6241 41 1 2.9379 -4.4593 -2.0343 42 1 1.8041 -2.8721 -3.6188 43 1 3.3118 -2.2660 -2.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408365704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -37.379498 kcal Electronic energy + Delta-G solvation = -23250.301285 eV Core-core repulsion = 19911.013179 eV Total energy + Delta-G solvation = -3339.288106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85988 -38.86071 -37.09049 -34.14165 -33.70420 -32.95406 -32.09695 -30.25460 -27.70368 -27.24831 -26.24869 -24.35802 -22.78557 -22.05485 -20.64304 -19.92110 -18.93464 -18.13337 -16.33678 -16.14554 -16.05656 -15.51684 -15.11255 -14.75888 -14.72372 -14.20481 -14.05180 -13.91183 -13.47334 -13.21618 -13.03537 -12.45682 -12.31261 -12.24688 -12.13956 -11.95088 -11.83241 -11.65695 -11.20882 -11.01447 -10.96032 -10.88307 -10.60940 -10.53958 -10.29601 -10.20248 -9.41355 -9.38205 -9.01528 -8.74628 -8.64515 -7.77022 -6.14936 -4.21631 3.21540 3.25794 3.31017 3.32715 3.36343 3.88204 4.09298 4.32906 4.53120 4.54865 4.72088 4.81084 4.88000 5.00528 5.05369 5.16814 5.21128 5.25619 5.27587 5.46238 5.55826 5.59730 5.65851 5.69353 5.73768 5.79919 5.83094 5.89749 6.01096 6.02666 6.17846 6.24057 6.31187 6.87754 7.00233 7.10988 7.51107 7.54617 7.57592 7.90381 8.04190 8.76279 8.93721 9.33386 9.48299 10.95255 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.003789 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.842056 B = 7387.913245 C = 7718.763223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.136 4.136 4 C 0.170 3.830 5 H 0.108 0.892 6 N -0.736 5.736 7 C 0.696 3.304 8 O -0.597 6.597 9 N -0.729 5.729 10 C 0.268 3.732 11 C -0.543 4.543 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.175 4.175 20 H 0.108 0.892 21 C -0.101 4.101 22 C -0.151 4.151 23 C 0.063 3.937 24 O -0.360 6.360 25 C 0.050 3.950 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.390 0.610 34 H 0.385 0.615 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 2.637 -17.020 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.194 4.194 4 C 0.062 3.938 5 H 0.126 0.874 6 N -0.392 5.392 7 C 0.396 3.604 8 O -0.475 6.475 9 N -0.381 5.381 10 C 0.147 3.853 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.195 4.195 20 H 0.125 0.875 21 C -0.138 4.138 22 C -0.189 4.189 23 C -0.014 4.014 24 O -0.279 6.279 25 C -0.008 4.008 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.217 0.783 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.256 2.122 -16.066 20.937 hybrid contribution 1.812 0.320 -0.597 1.934 sum -11.444 2.443 -16.664 20.362 Atomic orbital electron populations 1.21576 0.91518 1.02827 1.02196 1.22080 0.96984 0.94358 0.93100 1.21703 1.00416 0.94836 1.02422 1.21084 0.81642 0.93362 0.97685 0.87392 1.44849 1.07615 1.66983 1.19793 1.16093 0.82908 0.79591 0.81794 1.90874 1.63782 1.49704 1.43185 1.45718 1.05418 1.63874 1.23085 1.18972 0.91129 0.95341 0.79867 1.21186 0.92345 1.41259 1.03309 0.92045 1.24935 0.99214 0.94760 0.95044 1.69967 1.36070 1.39881 1.06356 0.86480 0.84214 0.78743 0.77473 1.20091 1.21070 1.20128 1.23889 1.01093 0.95635 0.98921 0.87454 1.21351 0.99192 0.98006 0.95290 1.22137 1.02418 0.98308 0.96058 1.22517 0.96879 0.85397 0.96594 1.87896 1.58017 1.43256 1.38734 1.23629 0.96406 0.97202 0.83549 0.90759 0.91844 0.91804 0.91539 0.92496 0.92222 0.91612 0.77585 0.78265 0.95770 0.95726 0.92406 0.91390 0.91446 0.91489 0.90907 0.89171 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.02 37.16 0.34 -0.82 16 2 C -0.06 -0.68 1.44 -157.22 -0.23 -0.90 16 3 C -0.14 -1.33 8.89 37.16 0.33 -1.00 16 4 C 0.17 2.26 3.89 -71.37 -0.28 1.98 16 5 H 0.11 1.66 7.52 -51.93 -0.39 1.27 16 6 N -0.74 -10.81 4.15 -62.11 -0.26 -11.07 16 7 C 0.70 14.13 8.57 -86.93 -0.74 13.38 16 8 O -0.60 -14.77 15.97 5.29 0.08 -14.68 16 9 N -0.73 -15.44 5.55 -66.41 -0.37 -15.80 16 10 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 11 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 12 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 C -0.18 -2.11 3.19 -93.03 -0.30 -2.41 16 20 H 0.11 1.24 6.23 -51.93 -0.32 0.92 16 21 C -0.10 -1.23 5.97 -26.59 -0.16 -1.39 16 22 C -0.15 -1.46 5.95 -26.31 -0.16 -1.62 16 23 C 0.06 0.59 6.66 36.85 0.25 0.84 16 24 O -0.36 -4.16 10.93 -34.61 -0.38 -4.54 16 25 C 0.05 0.56 3.04 -29.84 -0.09 0.47 16 26 H 0.07 0.83 6.18 -51.93 -0.32 0.51 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.63 6.19 -51.92 -0.32 0.31 16 30 H 0.06 0.54 6.90 -51.93 -0.36 0.18 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.39 4.74 6.38 -40.82 -0.26 4.48 16 34 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.89 7.69 -51.93 -0.40 0.49 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -32.22 338.41 -8.49 -40.71 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.90 Total: 7.57 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.49 Total: 2.30 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.11 Total: -52.28 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.29 Total: -19.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.22 -8.49 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.328 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds