Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 113.18105 * 2 1 4 4 C 1.55630 * 114.06274 * 227.16180 * 2 1 3 5 5 H 1.09000 * 114.05850 * 168.52310 * 4 2 1 6 6 N 1.46495 * 114.06280 * 36.34828 * 4 2 1 7 7 C 1.34776 * 120.00348 * 154.99915 * 6 4 2 8 8 O 1.21586 * 119.99787 * 0.02562 * 7 6 4 9 9 N 1.34780 * 120.00334 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46762 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00200 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99471 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00219 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47243 * 89.99421 * 15 13 11 17 17 H 1.48500 * 109.47193 * 209.99965 * 15 13 11 18 18 H 1.48507 * 109.47158 * 329.99685 * 15 13 11 19 19 C 1.50365 * 84.39627 * 282.41363 * 4 2 1 20 20 H 1.08996 * 113.28989 * 78.02678 * 19 4 2 21 21 C 1.52049 * 124.10452 * 220.66990 * 19 4 2 22 22 C 1.54388 * 105.23805 * 156.69532 * 21 19 4 23 23 C 1.52407 * 112.06702 * 306.09205 * 22 21 19 24 24 O 1.44160 * 112.91251 * 50.02522 * 23 22 21 25 25 C 1.40849 * 109.95671 * 303.35927 * 24 23 22 26 26 H 1.09001 * 111.47817 * 306.61924 * 25 24 23 27 27 H 1.09003 * 109.46968 * 306.89446 * 1 2 3 28 28 H 1.08997 * 109.47041 * 66.89588 * 1 2 3 29 29 H 1.08999 * 109.46840 * 186.89277 * 1 2 3 30 30 H 1.08994 * 109.47171 * 173.10686 * 3 2 1 31 31 H 1.09001 * 109.46945 * 293.10834 * 3 2 1 32 32 H 1.09002 * 109.47045 * 53.10335 * 3 2 1 33 33 H 0.97006 * 120.00375 * 335.00013 * 6 4 2 34 34 H 0.96998 * 119.99512 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46648 * 300.00212 * 10 9 7 36 36 H 1.09004 * 109.47095 * 59.99914 * 10 9 7 37 37 H 0.96999 * 120.00157 * 180.02562 * 14 13 11 38 38 H 1.09002 * 110.31050 * 37.72251 * 21 19 4 39 39 H 1.09002 * 110.30799 * 275.66755 * 21 19 4 40 40 H 1.09000 * 108.96388 * 66.75816 * 22 21 19 41 41 H 1.08999 * 108.96442 * 185.42759 * 22 21 19 42 42 H 1.08998 * 108.79413 * 170.90919 * 23 22 21 43 43 H 1.08995 * 108.79637 * 289.25410 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1323 1.4065 0.0000 4 6 2.1646 -0.9662 -1.0420 5 1 3.2364 -0.8265 -1.1826 6 7 1.4244 -1.0544 -2.3031 7 6 2.0618 -1.4134 -3.4351 8 8 3.2512 -1.6645 -3.4094 9 7 1.3809 -1.4940 -4.5954 10 6 2.0738 -1.8848 -5.8257 11 6 1.0946 -1.8974 -6.9712 12 1 0.0597 -1.6406 -6.7998 13 6 1.5199 -2.2380 -8.2378 14 7 2.7801 -2.5513 -8.4463 15 14 0.3062 -2.2545 -9.6576 16 1 0.2749 -0.9149 -10.2976 17 1 0.7260 -3.2705 -10.6559 18 1 -1.0474 -2.5913 -9.1478 19 6 1.8110 -2.0359 -0.0462 20 1 0.7560 -2.3092 -0.0637 21 6 2.7114 -3.2120 0.2975 22 6 2.2646 -3.6677 1.7034 23 6 2.2769 -2.5214 2.7077 24 8 1.5850 -1.3500 2.2309 25 6 2.1417 -0.9273 1.0081 26 1 3.2202 -0.7905 1.0866 27 1 -0.3633 0.6170 0.8219 28 1 -0.3633 0.4032 -0.9452 29 1 -0.3633 -1.0202 0.1233 30 1 3.2131 1.3389 0.1233 31 1 1.9045 1.8992 -0.9452 32 1 1.7081 1.9833 0.8219 33 1 0.4754 -0.8544 -2.3236 34 1 0.4322 -1.2933 -4.6159 35 1 2.8700 -1.1709 -6.0366 36 1 2.5013 -2.8797 -5.7015 37 1 3.0793 -2.7905 -9.3374 38 1 3.7547 -2.8970 0.3157 39 1 2.5728 -4.0178 -0.4232 40 1 1.2545 -4.0724 1.6402 41 1 2.9373 -4.4513 2.0521 42 1 1.8036 -2.8577 3.6301 43 1 3.3114 -2.2533 2.9219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408365706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -43.894289 kcal Electronic energy + Delta-G solvation = -22986.450993 eV Core-core repulsion = 19646.880384 eV Total energy + Delta-G solvation = -3339.570609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.73086 -38.90667 -37.11103 -34.11273 -33.69042 -33.00150 -32.08292 -30.36600 -27.77847 -27.30826 -26.30971 -24.16168 -22.75512 -21.82801 -20.50794 -20.03461 -19.20877 -18.00246 -16.72305 -16.08654 -16.00436 -15.33775 -14.92665 -14.76439 -14.60565 -14.52009 -13.99239 -13.97825 -13.52800 -13.03928 -12.90387 -12.57643 -12.35443 -12.23039 -12.07127 -11.94015 -11.82319 -11.68908 -11.20407 -11.04415 -10.94443 -10.91466 -10.72041 -10.62025 -10.28092 -10.26490 -9.40483 -9.35161 -9.07811 -8.72155 -8.58522 -7.73133 -6.13691 -4.20082 3.15654 3.25834 3.31889 3.34315 3.57212 3.89135 4.08236 4.34373 4.48244 4.55295 4.68187 4.77376 4.85785 4.96571 5.11280 5.16428 5.21186 5.22469 5.28453 5.42483 5.46309 5.54693 5.61414 5.65370 5.72385 5.79125 5.82923 5.85847 5.96492 5.99085 6.14442 6.23127 6.33526 6.87859 6.99675 7.16460 7.54448 7.58181 7.59673 7.93799 8.07188 8.78911 8.97598 9.36337 9.50834 10.96576 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.003453 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.715652 B = 8105.778374 C = 8472.821061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.137 4.137 4 C 0.172 3.828 5 H 0.120 0.880 6 N -0.741 5.741 7 C 0.694 3.306 8 O -0.601 6.601 9 N -0.730 5.730 10 C 0.267 3.733 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.175 4.175 20 H 0.104 0.896 21 C -0.105 4.105 22 C -0.152 4.152 23 C 0.062 3.938 24 O -0.357 6.357 25 C 0.052 3.948 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.392 0.608 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 3.169 21.616 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C -0.194 4.194 4 C 0.065 3.935 5 H 0.137 0.863 6 N -0.397 5.397 7 C 0.393 3.607 8 O -0.480 6.480 9 N -0.382 5.382 10 C 0.146 3.854 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.195 4.195 20 H 0.122 0.878 21 C -0.143 4.143 22 C -0.189 4.189 23 C -0.014 4.014 24 O -0.276 6.276 25 C -0.007 4.007 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.218 0.782 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.965 2.933 21.529 21.929 hybrid contribution -1.240 -0.117 -0.926 1.552 sum -4.205 2.817 20.603 21.215 Atomic orbital electron populations 1.21586 0.92164 1.02789 1.02116 1.22040 0.96942 0.94498 0.93099 1.21738 1.00631 0.94782 1.02292 1.21797 0.97589 0.93511 0.80604 0.86271 1.45041 1.12057 1.75594 1.07018 1.16183 0.85481 0.78529 0.80466 1.90858 1.13927 1.57626 1.85631 1.45723 1.12267 1.72094 1.08080 1.18968 0.92578 0.95788 0.78055 1.21234 0.95546 1.48294 0.92903 0.91974 1.24944 0.95438 0.94829 0.98823 1.69979 1.14832 1.44994 1.22510 0.86419 0.80950 0.77882 0.81658 1.20491 1.21032 1.19785 1.23971 1.01394 0.95748 0.98361 0.87833 1.21505 0.98983 0.98350 0.95458 1.22140 1.02533 0.98311 0.95961 1.22543 0.96915 0.85375 0.96603 1.87905 1.58092 1.43477 1.38094 1.23150 0.96748 0.97252 0.83546 0.90327 0.91688 0.91996 0.91576 0.92225 0.91732 0.92216 0.77405 0.78233 0.95772 0.95793 0.92488 0.91461 0.91221 0.91444 0.90846 0.89092 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.26 37.16 0.31 -0.91 16 2 C -0.06 -0.68 1.42 -157.56 -0.22 -0.91 16 3 C -0.14 -1.34 9.26 37.16 0.34 -1.00 16 4 C 0.17 2.29 3.49 -71.49 -0.25 2.05 16 5 H 0.12 1.83 7.41 -51.93 -0.38 1.44 16 6 N -0.74 -11.14 5.33 -62.22 -0.33 -11.47 16 7 C 0.69 14.34 8.57 -86.92 -0.74 13.60 16 8 O -0.60 -14.98 15.94 5.29 0.08 -14.90 16 9 N -0.73 -15.72 5.55 -66.41 -0.37 -16.09 16 10 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 11 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.17 -2.08 3.04 -93.50 -0.28 -2.37 16 20 H 0.10 1.25 6.16 -51.93 -0.32 0.93 16 21 C -0.11 -1.22 6.19 -26.49 -0.16 -1.38 16 22 C -0.15 -1.37 5.95 -26.31 -0.16 -1.53 16 23 C 0.06 0.55 6.67 36.85 0.25 0.79 16 24 O -0.36 -4.01 10.93 -34.61 -0.38 -4.39 16 25 C 0.05 0.57 3.12 -29.97 -0.09 0.47 16 26 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 29 H 0.07 0.64 6.09 -51.93 -0.32 0.32 16 30 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.39 4.84 7.11 -40.82 -0.29 4.55 16 34 H 0.39 7.11 8.34 -40.82 -0.34 6.77 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.63 341.45 -8.62 -41.25 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.02 Total: 7.55 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.46 Total: 2.53 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.04 Total: -53.11 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.29 Total: -19.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.63 -8.62 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.649 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds