Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 110.43488 * 2 1 4 4 N 1.46492 * 109.47373 * 300.70167 * 3 2 1 5 5 C 1.34779 * 120.00109 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00246 * 355.07723 * 5 4 3 7 7 N 1.34781 * 119.99876 * 175.07256 * 5 4 3 8 8 C 1.46495 * 119.99884 * 184.93961 * 7 5 4 9 9 C 1.52999 * 109.47081 * 185.63070 * 8 7 5 10 10 C 1.50698 * 115.55345 * 32.55426 * 9 8 7 11 11 H 1.07996 * 120.00444 * 267.33559 * 10 9 8 12 12 C 1.37879 * 119.99916 * 87.33091 * 10 9 8 13 13 N 1.31512 * 120.00067 * 178.80096 * 12 10 9 14 14 Si 1.86797 * 119.99976 * 358.80177 * 12 10 9 15 15 H 1.48504 * 109.47265 * 91.25063 * 14 12 10 16 16 H 1.48502 * 109.47270 * 211.25014 * 14 12 10 17 17 H 1.48505 * 109.47385 * 331.25263 * 14 12 10 18 18 C 1.53001 * 117.49713 * 246.84897 * 9 8 7 19 19 C 1.53003 * 60.00103 * 252.50645 * 18 9 8 20 20 C 1.54807 * 110.48819 * 122.54530 * 2 1 3 21 21 C 1.55344 * 101.93414 * 97.82723 * 20 2 1 22 22 O 1.44382 * 103.49940 * 37.05170 * 21 20 2 23 23 C 1.43738 * 106.97635 * 319.90967 * 22 21 20 24 24 H 1.09006 * 109.47204 * 59.30261 * 1 2 3 25 25 H 1.09000 * 109.47382 * 299.29751 * 1 2 3 26 26 H 1.09001 * 109.47208 * 179.29737 * 1 2 3 27 27 H 1.09007 * 109.47139 * 60.70148 * 3 2 1 28 28 H 1.09000 * 109.46928 * 180.69690 * 3 2 1 29 29 H 0.97006 * 120.00156 * 0.02562 * 4 3 2 30 30 H 0.97003 * 119.99970 * 4.95181 * 7 5 4 31 31 H 1.08999 * 109.47419 * 305.62764 * 8 7 5 32 32 H 1.08999 * 109.47126 * 65.63344 * 8 7 5 33 33 H 0.97002 * 119.99953 * 179.97438 * 13 12 10 34 34 H 1.09001 * 117.49850 * 359.97438 * 18 9 8 35 35 H 1.09002 * 117.50044 * 145.02204 * 18 9 8 36 36 H 1.08993 * 117.50311 * 252.51207 * 19 18 9 37 37 H 1.09004 * 117.51658 * 107.47767 * 19 18 9 38 38 H 1.09007 * 110.91010 * 215.99340 * 20 2 1 39 39 H 1.09000 * 110.90858 * 339.59591 * 20 2 1 40 40 H 1.09005 * 110.63721 * 278.53603 * 21 20 2 41 41 H 1.08998 * 110.59189 * 155.54596 * 21 20 2 42 42 H 1.08997 * 109.88018 * 267.09108 * 23 22 21 43 43 H 1.09000 * 110.00648 * 146.00807 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 7 1.5739 2.1376 -1.1875 5 6 1.9183 3.4233 -1.3990 6 8 2.5610 4.0262 -0.5613 7 7 1.5503 4.0408 -2.5392 8 6 2.0152 5.4017 -2.8181 9 6 1.3473 5.9173 -4.0944 10 6 -0.0506 5.4137 -4.3455 11 1 -0.2065 4.5304 -4.9470 12 6 -1.1307 6.0805 -3.8072 13 7 -2.3519 5.6548 -4.0458 14 14 -0.8594 7.5888 -2.7390 15 1 -0.8802 8.8069 -3.5881 16 1 -1.9382 7.6757 -1.7221 17 1 0.4558 7.4828 -2.0577 18 6 2.2417 6.1571 -5.3124 19 6 1.6732 7.3459 -4.5348 20 6 2.0718 -0.7801 1.2224 21 6 2.3781 -2.1723 0.6050 22 8 2.8755 -1.8545 -0.7127 23 6 2.0694 -0.7765 -1.2168 24 1 -0.3634 0.5247 -0.8837 25 1 -0.3634 0.5029 0.8962 26 1 -0.3634 -1.0276 -0.0126 27 1 1.7197 1.9498 0.8963 28 1 3.1539 1.4154 -0.0125 29 1 1.0007 1.6785 -1.8214 30 1 0.9774 3.5841 -3.1749 31 1 1.7552 6.0528 -1.9835 32 1 3.0971 5.3960 -2.9510 33 1 -3.1118 6.1237 -3.6667 34 1 3.3060 5.9480 -5.2043 35 1 1.8190 5.9505 -6.2956 36 1 0.8766 7.9212 -5.0064 37 1 2.3632 7.9186 -3.9150 38 1 2.9797 -0.3166 1.6085 39 1 1.3140 -0.8566 2.0021 40 1 1.4698 -2.7713 0.5383 41 1 3.1393 -2.6910 1.1878 42 1 1.2392 -1.1756 -1.7995 43 1 2.6751 -0.1171 -1.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430676920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -57.064677 kcal Electronic energy + Delta-G solvation = -22804.342985 eV Core-core repulsion = 19464.201265 eV Total energy + Delta-G solvation = -3340.141720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30849 -39.14065 -37.14277 -35.47212 -33.32932 -32.61835 -32.18978 -29.82426 -27.36684 -26.53499 -25.66917 -24.72103 -22.79811 -21.69747 -20.25423 -19.67720 -19.28611 -17.72922 -16.63444 -16.40727 -15.93285 -15.63843 -15.21206 -15.11877 -14.84649 -14.11847 -14.04622 -13.74101 -13.40374 -13.17144 -12.94103 -12.81488 -12.72414 -12.47071 -12.25009 -11.92631 -11.70525 -11.17998 -11.11563 -10.97435 -10.82711 -10.67213 -10.50869 -10.18869 -9.87432 -9.75742 -9.56588 -9.16804 -8.85353 -8.66592 -8.60641 -7.98376 -6.21593 -4.26820 3.20066 3.27740 3.37625 3.44806 3.71765 3.78040 4.19933 4.37749 4.40840 4.59577 4.75475 4.86163 4.92804 4.95543 5.00319 5.14777 5.37378 5.44387 5.46313 5.52731 5.58736 5.71196 5.74204 5.74724 5.87212 5.92322 6.00052 6.03938 6.09416 6.32805 6.45839 6.54604 6.62518 6.72153 6.79267 6.92748 7.08220 7.31818 7.51656 7.66843 8.35979 8.68528 8.78075 9.20628 9.42695 10.88839 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.004013 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.192478 B = 6975.974587 C = 7278.605078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.158 3.842 4 N -0.753 5.753 5 C 0.699 3.301 6 O -0.610 6.610 7 N -0.714 5.714 8 C 0.171 3.829 9 C -0.015 4.015 10 C -0.493 4.493 11 H 0.079 0.921 12 C 0.085 3.915 13 N -0.893 5.893 14 Si 0.878 3.122 15 H -0.279 1.279 16 H -0.295 1.295 17 H -0.254 1.254 18 C -0.179 4.179 19 C -0.196 4.196 20 C -0.143 4.143 21 C 0.047 3.953 22 O -0.378 6.378 23 C 0.052 3.948 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.407 0.593 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -12.699 7.568 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C 0.033 3.967 4 N -0.410 5.410 5 C 0.399 3.601 6 O -0.490 6.490 7 N -0.368 5.368 8 C 0.046 3.954 9 C -0.017 4.017 10 C -0.530 4.530 11 H 0.096 0.904 12 C -0.119 4.119 13 N -0.530 5.530 14 Si 0.706 3.294 15 H -0.205 1.205 16 H -0.222 1.222 17 H -0.178 1.178 18 C -0.216 4.216 19 C -0.234 4.234 20 C -0.181 4.181 21 C -0.030 4.030 22 O -0.296 6.296 23 C -0.025 4.025 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.244 0.756 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.945 -12.201 8.220 16.268 hybrid contribution -0.857 0.659 0.075 1.084 sum 6.088 -11.541 8.295 15.462 Atomic orbital electron populations 1.21887 0.92681 1.02029 1.03149 1.22229 0.97197 0.95544 0.95916 1.21080 0.98437 0.88943 0.88251 1.45091 1.56485 1.12022 1.27425 1.16013 0.80242 0.81053 0.82829 1.90851 1.46849 1.65517 1.45794 1.45106 1.53948 1.17107 1.20663 1.20875 0.95337 0.81556 0.97599 1.19632 0.96285 0.94753 0.90983 1.20118 0.86060 1.13591 1.33216 0.90351 1.24938 0.94777 0.97083 0.95067 1.69884 0.98203 1.40626 1.44266 0.86882 0.78647 0.83296 0.80583 1.20469 1.22204 1.17838 1.22912 0.97277 1.03734 0.97659 1.22952 1.03186 0.92187 1.05087 1.23254 1.02221 0.95481 0.97148 1.23599 0.99343 0.96162 0.83860 1.88877 1.56463 1.52884 1.31413 1.23379 0.95219 0.88456 0.95406 0.91656 0.91754 0.92230 0.91514 0.91647 0.77061 0.75586 0.92181 0.93960 0.92468 0.90836 0.89504 0.89287 0.90752 0.89918 0.89703 0.92185 0.89013 0.91918 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.08 37.15 0.30 -0.97 16 2 C -0.11 -1.04 0.68 -152.98 -0.10 -1.14 16 3 C 0.16 1.99 4.33 -4.04 -0.02 1.97 16 4 N -0.75 -10.99 4.88 -65.23 -0.32 -11.31 16 5 C 0.70 13.52 8.55 -86.91 -0.74 12.77 16 6 O -0.61 -13.92 16.32 5.29 0.09 -13.83 16 7 N -0.71 -14.17 5.29 -65.23 -0.34 -14.51 16 8 C 0.17 3.64 5.63 -4.04 -0.02 3.62 16 9 C -0.02 -0.34 1.24 -155.66 -0.19 -0.53 16 10 C -0.49 -12.52 7.79 -34.44 -0.27 -12.79 16 11 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 12 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 13 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 14 Si 0.88 21.40 25.16 -169.99 -4.28 17.12 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.25 -6.06 5.30 56.52 0.30 -5.76 16 18 C -0.18 -3.45 9.88 -26.73 -0.26 -3.72 16 19 C -0.20 -4.04 7.60 -26.73 -0.20 -4.24 16 20 C -0.14 -1.15 6.29 -24.54 -0.15 -1.31 16 21 C 0.05 0.39 7.73 38.40 0.30 0.68 16 22 O -0.38 -4.33 11.52 -35.23 -0.41 -4.74 16 23 C 0.05 0.54 6.61 37.73 0.25 0.79 16 24 H 0.06 0.64 6.88 -51.93 -0.36 0.28 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.40 4.98 7.07 -40.82 -0.29 4.69 16 30 H 0.41 7.84 7.30 -40.82 -0.30 7.55 16 31 H 0.06 1.40 6.38 -51.93 -0.33 1.07 16 32 H 0.04 0.85 7.89 -51.93 -0.41 0.44 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 35 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.09 1.92 7.22 -51.93 -0.37 1.54 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 39 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.59 7.69 -51.93 -0.40 0.19 16 43 H 0.09 0.99 7.47 -51.93 -0.39 0.61 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -31.05 339.70 -7.71 -38.76 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.12 Total: 10.92 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.22 Total: -2.67 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.11 Total: -50.68 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.32 Total: -18.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.28 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.05 -7.71 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430676920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.305 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds