Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 110.43488 * 2 1 4 4 N 1.46492 * 109.47373 * 300.70167 * 3 2 1 5 5 C 1.34779 * 120.00109 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00246 * 355.07723 * 5 4 3 7 7 N 1.34781 * 119.99876 * 175.07256 * 5 4 3 8 8 C 1.46495 * 119.99884 * 184.93961 * 7 5 4 9 9 C 1.52999 * 109.47081 * 185.63070 * 8 7 5 10 10 C 1.50698 * 115.55345 * 32.55426 * 9 8 7 11 11 H 1.07996 * 120.00444 * 267.33559 * 10 9 8 12 12 C 1.37879 * 119.99916 * 87.33091 * 10 9 8 13 13 N 1.31512 * 120.00067 * 178.80096 * 12 10 9 14 14 Si 1.86797 * 119.99976 * 358.80177 * 12 10 9 15 15 H 1.48504 * 109.47265 * 91.25063 * 14 12 10 16 16 H 1.48502 * 109.47270 * 211.25014 * 14 12 10 17 17 H 1.48505 * 109.47385 * 331.25263 * 14 12 10 18 18 C 1.53001 * 117.49713 * 246.84897 * 9 8 7 19 19 C 1.53003 * 60.00103 * 252.50645 * 18 9 8 20 20 C 1.54807 * 110.48819 * 122.54530 * 2 1 3 21 21 C 1.55344 * 101.93414 * 97.82723 * 20 2 1 22 22 O 1.44382 * 103.49940 * 37.05170 * 21 20 2 23 23 C 1.43738 * 106.97635 * 319.90967 * 22 21 20 24 24 H 1.09006 * 109.47204 * 59.30261 * 1 2 3 25 25 H 1.09000 * 109.47382 * 299.29751 * 1 2 3 26 26 H 1.09001 * 109.47208 * 179.29737 * 1 2 3 27 27 H 1.09007 * 109.47139 * 60.70148 * 3 2 1 28 28 H 1.09000 * 109.46928 * 180.69690 * 3 2 1 29 29 H 0.97006 * 120.00156 * 0.02562 * 4 3 2 30 30 H 0.97003 * 119.99970 * 4.95181 * 7 5 4 31 31 H 1.08999 * 109.47419 * 305.62764 * 8 7 5 32 32 H 1.08999 * 109.47126 * 65.63344 * 8 7 5 33 33 H 0.97002 * 119.99953 * 179.97438 * 13 12 10 34 34 H 1.09001 * 117.49850 * 359.97438 * 18 9 8 35 35 H 1.09002 * 117.50044 * 145.02204 * 18 9 8 36 36 H 1.08993 * 117.50311 * 252.51207 * 19 18 9 37 37 H 1.09004 * 117.51658 * 107.47767 * 19 18 9 38 38 H 1.09007 * 110.91010 * 215.99340 * 20 2 1 39 39 H 1.09000 * 110.90858 * 339.59591 * 20 2 1 40 40 H 1.09005 * 110.63721 * 278.53603 * 21 20 2 41 41 H 1.08998 * 110.59189 * 155.54596 * 21 20 2 42 42 H 1.08997 * 109.88018 * 267.09108 * 23 22 21 43 43 H 1.09000 * 110.00648 * 146.00807 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 7 1.5739 2.1376 -1.1875 5 6 1.9183 3.4233 -1.3990 6 8 2.5610 4.0262 -0.5613 7 7 1.5503 4.0408 -2.5392 8 6 2.0152 5.4017 -2.8181 9 6 1.3473 5.9173 -4.0944 10 6 -0.0506 5.4137 -4.3455 11 1 -0.2065 4.5304 -4.9470 12 6 -1.1307 6.0805 -3.8072 13 7 -2.3519 5.6548 -4.0458 14 14 -0.8594 7.5888 -2.7390 15 1 -0.8802 8.8069 -3.5881 16 1 -1.9382 7.6757 -1.7221 17 1 0.4558 7.4828 -2.0577 18 6 2.2417 6.1571 -5.3124 19 6 1.6732 7.3459 -4.5348 20 6 2.0718 -0.7801 1.2224 21 6 2.3781 -2.1723 0.6050 22 8 2.8755 -1.8545 -0.7127 23 6 2.0694 -0.7765 -1.2168 24 1 -0.3634 0.5247 -0.8837 25 1 -0.3634 0.5029 0.8962 26 1 -0.3634 -1.0276 -0.0126 27 1 1.7197 1.9498 0.8963 28 1 3.1539 1.4154 -0.0125 29 1 1.0007 1.6785 -1.8214 30 1 0.9774 3.5841 -3.1749 31 1 1.7552 6.0528 -1.9835 32 1 3.0971 5.3960 -2.9510 33 1 -3.1118 6.1237 -3.6667 34 1 3.3060 5.9480 -5.2043 35 1 1.8190 5.9505 -6.2956 36 1 0.8766 7.9212 -5.0064 37 1 2.3632 7.9186 -3.9150 38 1 2.9797 -0.3166 1.6085 39 1 1.3140 -0.8566 2.0021 40 1 1.4698 -2.7713 0.5383 41 1 3.1393 -2.6910 1.1878 42 1 1.2392 -1.1756 -1.7995 43 1 2.6751 -0.1171 -1.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430676920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -79.178863 kcal Electronic energy + Delta-G solvation = -22805.301928 eV Core-core repulsion = 19464.201265 eV Total energy + Delta-G solvation = -3341.100663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34652 -40.43854 -38.79402 -36.56481 -34.95260 -34.23972 -33.71303 -30.56260 -28.65821 -27.76098 -27.21220 -26.07358 -23.56089 -23.30276 -21.71292 -21.07553 -20.55546 -19.14806 -18.36391 -17.36594 -17.17639 -16.83527 -16.68322 -16.39823 -15.97286 -15.68555 -15.39108 -15.00920 -14.76441 -14.57789 -14.15665 -14.13926 -14.04457 -13.86476 -13.45026 -13.09286 -12.86835 -12.58646 -12.39364 -12.14765 -11.99934 -11.89433 -11.78718 -11.57594 -11.55518 -11.31328 -10.95097 -10.66233 -10.63180 -10.41205 -10.19012 -9.53835 -8.30410 -6.35793 1.32313 1.39620 1.49697 1.85299 2.22782 2.36565 2.99783 3.04827 3.15953 3.39454 3.53713 3.64845 3.82237 4.08986 4.11575 4.19601 4.31961 4.37139 4.42621 4.60996 4.63438 4.66735 4.67961 4.77780 4.84840 4.87297 4.88258 4.90135 4.98357 5.09445 5.10288 5.13464 5.23582 5.30034 5.50465 5.51833 5.65873 5.77687 5.91987 6.12677 6.30363 6.72582 7.20881 7.35671 7.67208 8.83024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.004013 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.192478 B = 6975.974587 C = 7278.605078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C 0.158 3.842 4 N -0.736 5.736 5 C 0.696 3.304 6 O -0.645 6.645 7 N -0.716 5.716 8 C 0.179 3.821 9 C -0.040 4.040 10 C -0.475 4.475 11 H 0.052 0.948 12 C 0.040 3.960 13 N -0.937 5.937 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.306 1.306 17 H -0.245 1.245 18 C -0.155 4.155 19 C -0.196 4.196 20 C -0.139 4.139 21 C 0.044 3.956 22 O -0.402 6.402 23 C 0.052 3.948 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.406 0.594 30 H 0.409 0.591 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 -13.331 8.079 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C 0.034 3.966 4 N -0.393 5.393 5 C 0.395 3.605 6 O -0.528 6.528 7 N -0.371 5.371 8 C 0.054 3.946 9 C -0.041 4.041 10 C -0.513 4.513 11 H 0.070 0.930 12 C -0.159 4.159 13 N -0.576 5.576 14 Si 0.748 3.252 15 H -0.195 1.195 16 H -0.233 1.233 17 H -0.169 1.169 18 C -0.192 4.192 19 C -0.234 4.234 20 C -0.177 4.177 21 C -0.032 4.032 22 O -0.321 6.321 23 C -0.025 4.025 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.246 0.754 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.029 -12.864 8.719 17.492 hybrid contribution -1.151 0.763 -0.114 1.386 sum 6.878 -12.101 8.605 16.364 Atomic orbital electron populations 1.21884 0.91938 1.03072 1.02692 1.22147 0.97594 0.93431 0.96772 1.21200 0.98033 0.90498 0.86905 1.45012 1.55671 1.10527 1.28082 1.16179 0.79962 0.82116 0.82219 1.90821 1.48509 1.66713 1.46789 1.45056 1.54140 1.16875 1.20986 1.20730 0.96089 0.81698 0.96131 1.19538 0.95203 0.96509 0.92858 1.20237 0.87849 1.12083 1.31120 0.92967 1.25524 0.94659 0.99349 0.96395 1.69988 0.98991 1.42258 1.46351 0.86190 0.78458 0.81298 0.79292 1.19497 1.23343 1.16868 1.22958 0.98339 1.01614 0.96250 1.23003 1.03371 0.91702 1.05297 1.23271 1.02618 0.95025 0.96777 1.23807 1.00463 0.96349 0.82622 1.88853 1.57209 1.53070 1.32994 1.23366 0.95205 0.88353 0.95536 0.92630 0.91721 0.90435 0.92300 0.92487 0.75763 0.75415 0.94434 0.92447 0.92703 0.87897 0.89649 0.90455 0.88567 0.90187 0.87808 0.90760 0.87587 0.90910 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.08 71.98 0.58 -1.67 16 2 C -0.10 -1.75 0.68 -51.19 -0.03 -1.79 16 3 C 0.16 3.88 4.33 86.38 0.37 4.25 16 4 N -0.74 -21.14 4.88 -478.53 -2.34 -23.47 16 5 C 0.70 26.66 8.55 179.05 1.53 28.19 16 6 O -0.65 -29.33 16.32 -3.98 -0.06 -29.39 16 7 N -0.72 -28.07 5.29 -478.54 -2.53 -30.60 16 8 C 0.18 7.38 5.63 86.38 0.49 7.86 16 9 C -0.04 -1.69 1.24 -52.93 -0.07 -1.76 16 10 C -0.48 -24.14 7.79 25.60 0.20 -23.94 16 11 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 12 C 0.04 2.17 5.47 84.66 0.46 2.63 16 13 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 14 Si 0.92 43.86 25.16 68.60 1.73 45.58 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 17 H -0.25 -11.24 5.30 99.48 0.53 -10.71 16 18 C -0.15 -5.54 9.88 30.60 0.30 -5.24 16 19 C -0.20 -7.57 7.60 30.60 0.23 -7.34 16 20 C -0.14 -1.95 6.29 32.02 0.20 -1.75 16 21 C 0.04 0.62 7.73 72.79 0.56 1.18 16 22 O -0.40 -8.62 11.52 -148.98 -1.72 -10.34 16 23 C 0.05 1.01 6.61 72.35 0.48 1.49 16 24 H 0.05 1.01 6.88 -2.38 -0.02 0.99 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.41 9.98 7.07 -92.70 -0.66 9.33 16 30 H 0.41 15.68 7.30 -92.71 -0.68 15.00 16 31 H 0.04 1.72 6.38 -2.39 -0.02 1.70 16 32 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16 33 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.10 3.12 8.04 -2.39 -0.02 3.10 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.08 3.18 7.22 -2.39 -0.02 3.16 16 37 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 38 H 0.08 1.18 7.87 -2.38 -0.02 1.16 16 39 H 0.10 1.08 7.86 -2.39 -0.02 1.07 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.25 7.69 -2.39 -0.02 1.24 16 43 H 0.08 1.66 7.47 -2.39 -0.02 1.64 16 Total: -1.00 -66.48 339.70 0.19 -66.30 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.50 Total: 34.21 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.31 Total: 2.13 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.57 Total: -108.49 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.78 Total: -39.73 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.73 Total: 45.58 kcal Total: -66.48 0.19 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430676920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.882 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds