Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 112.85208 * 2 1 4 4 C 1.53781 * 113.61644 * 228.68947 * 2 1 3 5 5 H 1.09000 * 113.61489 * 105.38448 * 4 2 1 6 6 O 1.42897 * 113.61320 * 334.57210 * 4 2 1 7 7 C 1.54048 * 87.07851 * 220.02307 * 4 2 1 8 8 C 1.53777 * 86.98492 * 25.43094 * 7 4 2 9 9 H 1.09004 * 113.61486 * 219.97858 * 8 7 4 10 10 N 1.46507 * 113.61426 * 89.16013 * 8 7 4 11 11 C 1.34780 * 119.99877 * 105.86525 * 10 8 7 12 12 O 1.21581 * 120.00038 * 4.81325 * 11 10 8 13 13 N 1.34781 * 119.99809 * 184.81734 * 11 10 8 14 14 C 1.46494 * 119.99922 * 184.74139 * 13 11 10 15 15 C 1.52998 * 109.47208 * 184.39160 * 14 13 11 16 16 C 1.50699 * 115.54880 * 294.88096 * 15 14 13 17 17 H 1.08004 * 120.00134 * 119.12534 * 16 15 14 18 18 C 1.37881 * 119.99742 * 298.84741 * 16 15 14 19 19 N 1.31514 * 119.99677 * 173.62873 * 18 16 15 20 20 Si 1.86800 * 120.00181 * 353.63190 * 18 16 15 21 21 H 1.48495 * 109.47151 * 93.75128 * 20 18 16 22 22 H 1.48500 * 109.47106 * 213.74783 * 20 18 16 23 23 H 1.48491 * 109.46985 * 333.74751 * 20 18 16 24 24 C 1.52996 * 117.51871 * 80.57897 * 15 14 13 25 25 C 1.52997 * 117.49902 * 149.21018 * 15 14 13 26 26 H 1.08999 * 109.47107 * 288.81052 * 1 2 3 27 27 H 1.09006 * 109.46828 * 48.80273 * 1 2 3 28 28 H 1.09002 * 109.47316 * 168.80310 * 1 2 3 29 29 H 1.08998 * 109.47373 * 191.19644 * 3 2 1 30 30 H 1.09008 * 109.47002 * 311.19117 * 3 2 1 31 31 H 1.09004 * 109.47568 * 71.19204 * 3 2 1 32 32 H 0.96701 * 114.00385 * 179.97438 * 6 4 2 33 33 H 1.08991 * 113.61290 * 270.92425 * 7 4 2 34 34 H 1.09003 * 113.69401 * 139.94286 * 7 4 2 35 35 H 0.97001 * 119.99903 * 285.86001 * 10 8 7 36 36 H 0.96997 * 119.99761 * 4.73858 * 13 11 10 37 37 H 1.08999 * 109.47043 * 64.39196 * 14 13 11 38 38 H 1.08998 * 109.47225 * 304.39201 * 14 13 11 39 39 H 0.97000 * 120.00209 * 180.02562 * 19 18 16 40 40 H 1.08999 * 117.49969 * 214.97001 * 24 15 14 41 41 H 1.09005 * 117.49744 * 359.97438 * 24 15 14 42 42 H 1.09000 * 117.49972 * 359.97438 * 25 15 14 43 43 H 1.08996 * 117.49953 * 144.99821 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 1 2.5637 -0.4009 -1.9148 6 8 1.2919 -2.0114 -1.4370 7 6 3.1941 -1.3143 0.0033 8 6 2.1460 -0.9280 1.0603 9 1 2.5637 -0.3970 1.9157 10 7 1.2703 -2.0358 1.4506 11 6 1.4324 -2.6332 2.6478 12 8 2.2460 -2.1978 3.4394 13 7 0.6925 -3.7135 2.9675 14 6 0.7932 -4.3003 4.3060 15 6 -0.0591 -5.5691 4.3721 16 6 -1.5443 -5.3630 4.2211 17 1 -2.0732 -5.8266 3.4014 18 6 -2.2289 -4.5874 5.1326 19 7 -3.4975 -4.3040 4.9332 20 14 -1.3543 -3.9390 6.6505 21 1 -0.8326 -2.5759 6.3768 22 1 -2.3092 -3.8846 7.7865 23 1 -0.2262 -4.8410 6.9949 24 6 0.5384 -6.8531 3.7931 25 6 0.4075 -6.6856 5.3083 26 1 -0.3633 0.3314 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3634 -1.0081 -0.1996 29 1 3.1942 1.3532 -0.1995 30 1 1.6415 2.0076 -0.7734 31 1 1.9600 1.8734 0.9728 32 1 1.6737 -2.5997 -2.1027 33 1 4.0724 -0.6690 0.0032 34 1 3.4465 -2.3746 0.0060 35 1 0.5738 -2.3391 0.8475 36 1 0.0934 -4.1024 2.3113 37 1 0.4353 -3.5833 5.0449 38 1 1.8332 -4.5499 4.5160 39 1 -3.9791 -3.7580 5.5742 40 1 -0.1427 -7.5487 3.3030 41 1 1.5389 -6.7939 3.3645 42 1 1.3220 -6.5164 5.8768 43 1 -0.3596 -7.2712 5.8149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431192114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -34.300061 kcal Electronic energy + Delta-G solvation = -23205.994060 eV Core-core repulsion = 19866.839488 eV Total energy + Delta-G solvation = -3339.154572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73097 -38.86872 -36.98021 -35.37140 -33.34774 -32.77217 -32.16119 -30.43368 -27.46428 -26.71608 -25.23241 -24.00918 -22.66283 -21.57999 -20.25942 -19.25775 -18.72333 -17.89596 -17.13545 -16.39506 -15.77913 -15.29069 -15.11404 -14.93864 -14.69498 -14.15580 -13.92950 -13.31379 -13.17626 -12.85432 -12.84533 -12.58763 -12.47510 -12.25173 -12.14834 -12.05296 -11.94393 -11.06625 -11.02537 -10.88431 -10.64370 -10.54401 -10.23177 -10.17291 -9.74596 -9.73469 -9.45695 -9.14452 -8.80365 -8.70182 -8.46690 -8.05282 -6.15197 -4.16830 3.15767 3.33034 3.41954 3.47990 3.73168 3.78791 4.32195 4.41805 4.48071 4.72964 4.78852 4.87882 5.03708 5.11014 5.24140 5.25156 5.49814 5.52310 5.59694 5.72498 5.76459 5.78511 5.87085 5.93182 6.00099 6.01437 6.17842 6.20265 6.31361 6.38566 6.48392 6.55899 6.74393 6.94311 6.99006 7.11369 7.28644 7.45928 7.60981 7.70727 8.44106 8.67470 8.86731 9.19791 9.48884 10.95774 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.004692 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.553453 B = 5966.806204 C = 6258.532849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.088 3.912 5 H 0.065 0.935 6 O -0.546 6.546 7 C -0.189 4.189 8 C 0.159 3.841 9 H 0.099 0.901 10 N -0.725 5.725 11 C 0.701 3.299 12 O -0.609 6.609 13 N -0.718 5.718 14 C 0.173 3.827 15 C -0.017 4.017 16 C -0.488 4.488 17 H 0.077 0.923 18 C 0.084 3.916 19 N -0.892 5.892 20 Si 0.869 3.131 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.251 1.251 24 C -0.180 4.180 25 C -0.187 4.187 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.380 0.620 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.403 0.597 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.299 7.260 -12.977 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.182 4.182 4 C 0.028 3.972 5 H 0.083 0.917 6 O -0.351 6.351 7 C -0.229 4.229 8 C 0.051 3.949 9 H 0.117 0.883 10 N -0.382 5.382 11 C 0.401 3.599 12 O -0.489 6.489 13 N -0.371 5.371 14 C 0.049 3.951 15 C -0.018 4.018 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.120 4.120 19 N -0.529 5.529 20 Si 0.697 3.303 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.175 1.175 24 C -0.217 4.217 25 C -0.225 4.225 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.228 0.772 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.237 0.763 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.446 7.997 -11.704 18.219 hybrid contribution 0.126 -0.204 -0.108 0.263 sum 11.572 7.793 -11.812 18.281 Atomic orbital electron populations 1.21531 0.93044 1.02740 1.01622 1.22359 0.97101 0.94573 0.94952 1.21545 1.00487 0.93445 1.02757 1.22886 0.90770 0.88478 0.95043 0.91675 1.86404 1.44310 1.41193 1.63213 1.24192 0.97913 1.02820 0.97940 1.21538 0.90098 0.87230 0.96017 0.88307 1.44741 1.38220 1.36618 1.18576 1.16022 0.81585 0.80558 0.81734 1.90841 1.39957 1.67441 1.50680 1.44971 1.45768 1.29988 1.16420 1.20915 0.97477 0.94574 0.82152 1.19612 0.95629 0.85785 1.00765 1.20235 0.87952 1.31468 1.12864 0.90450 1.24904 0.94563 0.94822 0.97696 1.69895 1.09323 1.37427 1.36231 0.87011 0.80255 0.80058 0.83017 1.20405 1.21982 1.17460 1.22762 1.00191 1.02614 0.96148 1.23034 1.01567 1.05905 0.92028 0.92336 0.92778 0.91180 0.92121 0.91888 0.91403 0.77215 0.88833 0.90469 0.76060 0.76266 0.92958 0.93435 0.92507 0.89704 0.90922 0.91139 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.43 37.16 0.31 -1.23 16 2 C -0.09 -0.94 1.34 -153.70 -0.21 -1.15 16 3 C -0.12 -1.05 9.07 37.16 0.34 -0.71 16 4 C 0.09 0.81 4.70 -25.78 -0.12 0.69 16 5 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 6 O -0.55 -5.22 10.91 -35.23 -0.38 -5.60 16 7 C -0.19 -2.00 7.38 -25.78 -0.19 -2.19 16 8 C 0.16 2.14 3.78 -67.12 -0.25 1.88 16 9 H 0.10 1.51 7.41 -51.93 -0.38 1.13 16 10 N -0.73 -11.46 4.68 -57.88 -0.27 -11.73 16 11 C 0.70 14.07 8.55 -86.91 -0.74 13.33 16 12 O -0.61 -14.24 15.93 5.29 0.08 -14.15 16 13 N -0.72 -14.65 5.48 -65.23 -0.36 -15.01 16 14 C 0.17 3.88 5.11 -4.05 -0.02 3.86 16 15 C -0.02 -0.38 0.85 -155.67 -0.13 -0.51 16 16 C -0.49 -12.98 9.18 -34.44 -0.32 -13.30 16 17 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 18 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 19 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 20 Si 0.87 21.82 24.79 -169.99 -4.21 17.61 16 21 H -0.28 -7.17 6.97 56.52 0.39 -6.78 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.25 -5.96 5.98 56.52 0.34 -5.62 16 24 C -0.18 -3.53 9.96 -26.73 -0.27 -3.80 16 25 C -0.19 -3.89 8.45 -26.73 -0.23 -4.12 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.89 5.66 -51.93 -0.29 0.60 16 29 H 0.06 0.43 7.35 -51.93 -0.38 0.05 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.38 2.15 9.12 45.56 0.42 2.56 16 33 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 5.94 6.11 -40.82 -0.25 5.69 16 36 H 0.40 7.74 8.36 -40.82 -0.34 7.40 16 37 H 0.05 1.30 4.54 -51.93 -0.24 1.06 16 38 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.36 340.07 -7.31 -39.67 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -6.14 Total: 14.83 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.92 Total: -4.99 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.15 Total: -52.48 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.30 Total: -19.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.21 Total: 17.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.36 -7.31 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431192114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.370 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds