Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.52309 * 2 1 4 4 C 1.34769 * 119.99905 * 300.00028 * 3 2 1 5 5 O 1.21581 * 120.00401 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99630 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99647 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46856 * 181.04790 * 7 6 4 9 9 C 1.50697 * 115.55311 * 39.67721 * 8 7 6 10 10 H 1.07997 * 120.00054 * 264.54019 * 9 8 7 11 11 C 1.37880 * 120.00081 * 84.53234 * 9 8 7 12 12 N 1.31516 * 119.99918 * 352.92164 * 11 9 8 13 13 Si 1.86796 * 120.00092 * 172.91657 * 11 9 8 14 14 H 1.48497 * 109.47049 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46975 * 120.00111 * 13 11 9 16 16 H 1.48499 * 109.47401 * 240.00218 * 13 11 9 17 17 C 1.53007 * 117.49710 * 253.97046 * 8 7 6 18 18 C 1.52997 * 117.49816 * 185.35181 * 8 7 6 19 19 C 1.53185 * 109.51875 * 120.18997 * 2 1 3 20 20 C 1.53171 * 109.03304 * 176.88506 * 19 2 1 21 21 C 1.53094 * 109.16454 * 303.01731 * 20 19 2 22 22 O 1.42901 * 109.41173 * 57.61307 * 21 20 19 23 23 C 1.42902 * 114.09825 * 298.83906 * 22 21 20 24 24 H 1.08996 * 109.47715 * 180.12398 * 1 2 3 25 25 H 1.09000 * 109.46902 * 60.12371 * 1 2 3 26 26 H 1.09004 * 109.47099 * 300.13020 * 1 2 3 27 27 H 0.97003 * 119.99764 * 120.00166 * 3 2 1 28 28 H 0.96994 * 120.00253 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.47207 * 301.04139 * 7 6 4 30 30 H 1.08997 * 109.47224 * 61.04746 * 7 6 4 31 31 H 0.96994 * 120.00007 * 185.02686 * 12 11 9 32 32 H 1.08997 * 117.49392 * 0.02562 * 17 8 7 33 33 H 1.08992 * 117.49607 * 145.01915 * 17 8 7 34 34 H 1.09002 * 117.50084 * 214.98006 * 18 8 7 35 35 H 1.09005 * 117.50135 * 359.96862 * 18 8 7 36 36 H 1.09000 * 109.54271 * 296.75225 * 19 2 1 37 37 H 1.09003 * 109.54019 * 57.01595 * 19 2 1 38 38 H 1.09006 * 109.52137 * 183.11367 * 20 19 2 39 39 H 1.09004 * 109.52577 * 62.92384 * 20 19 2 40 40 H 1.09002 * 109.48104 * 297.62712 * 21 20 19 41 41 H 1.09003 * 109.48871 * 177.59903 * 21 20 19 42 42 H 1.09006 * 109.48228 * 301.18059 * 23 22 21 43 43 H 1.09001 * 109.48208 * 181.14664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3808 0.0000 4 6 1.6947 2.2109 -1.0108 5 8 0.9958 1.8138 -1.9229 6 7 2.1456 3.4810 -1.0110 7 6 1.7930 4.3833 -2.1101 8 6 2.4493 5.7464 -1.8814 9 6 3.8540 5.7083 -1.3371 10 1 4.0240 5.7998 -0.2745 11 6 4.9222 5.5566 -2.1956 12 7 4.7116 5.3059 -3.4693 13 14 6.6684 5.7072 -1.5496 14 1 6.6343 5.9896 -0.0921 15 1 7.3965 4.4354 -1.7900 16 1 7.3626 6.8156 -2.2529 17 6 1.5478 6.8979 -1.4317 18 6 2.1003 6.8711 -2.8581 19 6 2.0418 -0.7261 1.2480 20 6 3.5715 -0.7879 1.1978 21 6 4.0042 -1.4817 -0.0965 22 8 3.4694 -0.7737 -1.2166 23 6 2.0416 -0.7242 -1.2480 24 1 -0.3634 -1.0276 0.0022 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3633 0.5159 0.8888 27 1 2.5776 1.6975 0.7275 28 1 2.7035 3.7978 -0.2835 29 1 2.1458 3.9636 -3.0521 30 1 0.7103 4.5032 -2.1485 31 1 5.4609 5.1269 -4.0587 32 1 0.4873 6.6843 -1.2983 33 1 1.9707 7.6281 -0.7418 34 1 2.8867 7.5838 -3.1068 35 1 1.4036 6.6399 -3.6639 36 1 1.7278 -0.1837 2.1398 37 1 1.6365 -1.7376 1.2732 38 1 3.9415 -1.3513 2.0544 39 1 3.9780 0.2232 1.2226 40 1 3.6314 -2.5060 -0.1020 41 1 5.0925 -1.4906 -0.1580 42 1 1.6430 -1.7386 -1.2686 43 1 1.7159 -0.1873 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431203376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -58.639898 kcal Electronic energy + Delta-G solvation = -23560.520217 eV Core-core repulsion = 20220.310191 eV Total energy + Delta-G solvation = -3340.210026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34481 -38.42726 -36.68433 -35.10024 -33.17079 -32.41959 -31.97603 -30.74382 -26.86085 -26.01267 -25.11478 -25.06581 -22.30471 -21.15185 -20.63383 -19.50394 -19.05425 -17.59834 -16.59717 -15.98663 -15.92630 -15.16788 -14.93197 -14.60420 -14.35576 -14.19188 -14.15823 -13.70045 -12.93527 -12.91522 -12.66390 -12.53411 -12.28540 -12.07506 -11.85698 -11.63736 -11.54864 -11.19769 -11.02142 -10.88499 -10.72229 -10.50571 -10.42039 -10.19981 -9.59693 -9.54375 -9.21598 -8.89411 -8.56835 -8.47862 -8.22315 -7.73958 -6.06414 -4.15413 3.25359 3.33081 3.34866 3.35960 3.96790 4.05259 4.35791 4.56081 4.71638 4.78523 4.91934 4.99635 5.23057 5.24662 5.35063 5.40507 5.51140 5.53921 5.63335 5.69724 5.81689 5.83423 6.00547 6.07744 6.09942 6.27449 6.36548 6.45175 6.55104 6.63402 6.76196 6.96206 6.98322 7.13285 7.37231 7.41046 7.45519 7.57489 7.75844 7.82237 8.37203 8.84487 8.89753 9.40650 9.51726 11.01374 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.005552 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.438496 B = 5042.464182 C = 6005.035098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 N -0.738 5.738 4 C 0.704 3.296 5 O -0.608 6.608 6 N -0.713 5.713 7 C 0.185 3.815 8 C 0.029 3.971 9 C -0.503 4.503 10 H 0.060 0.940 11 C 0.078 3.922 12 N -0.868 5.868 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.211 4.211 18 C -0.152 4.152 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.057 3.943 22 O -0.370 6.370 23 C 0.049 3.951 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.392 0.608 28 H 0.399 0.601 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -11.805 9.745 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 N -0.394 5.394 4 C 0.404 3.596 5 O -0.489 6.489 6 N -0.365 5.365 7 C 0.061 3.939 8 C 0.028 3.972 9 C -0.541 4.541 10 H 0.078 0.922 11 C -0.127 4.127 12 N -0.503 5.503 13 Si 0.715 3.285 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.249 4.249 18 C -0.190 4.190 19 C -0.161 4.161 20 C -0.195 4.195 21 C -0.020 4.020 22 O -0.288 6.288 23 C -0.029 4.029 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.225 0.775 28 H 0.234 0.766 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.691 -12.014 8.547 15.472 hybrid contribution 1.448 0.256 1.172 1.880 sum -3.243 -11.758 9.718 15.595 Atomic orbital electron populations 1.22188 0.94052 1.01770 1.04084 1.20619 0.94279 0.81737 0.95574 1.45034 1.57333 1.10946 1.26136 1.15969 0.80410 0.81141 0.82061 1.90750 1.44202 1.76414 1.37523 1.45114 1.54369 1.09486 1.27571 1.20666 0.95141 0.89483 0.88603 1.19058 0.93709 0.85544 0.98911 1.20290 0.88342 1.52497 0.92962 0.92222 1.24972 0.98794 0.94256 0.94686 1.69982 1.31225 1.45199 1.03915 0.86621 0.85037 0.77759 0.79072 1.19749 1.21021 1.20961 1.23076 0.97301 1.05562 0.98912 1.22488 1.01532 1.04342 0.90648 1.21884 0.95826 1.00966 0.97433 1.22209 0.96012 1.02578 0.98719 1.22556 0.99156 0.94217 0.86093 1.88072 1.20378 1.75897 1.44412 1.23190 0.80751 0.98793 1.00118 0.92447 0.89539 0.92588 0.77459 0.76578 0.91759 0.94982 0.92889 0.91642 0.90505 0.89983 0.91688 0.90842 0.90477 0.90911 0.90716 0.93656 0.89191 0.93344 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.41 37.16 0.31 -1.76 16 2 C 0.17 2.19 0.68 -131.68 -0.09 2.10 16 3 N -0.74 -11.40 4.75 -52.29 -0.25 -11.65 16 4 C 0.70 13.99 7.98 -86.92 -0.69 13.29 16 5 O -0.61 -13.65 12.55 5.29 0.07 -13.59 16 6 N -0.71 -14.85 5.34 -65.22 -0.35 -15.19 16 7 C 0.19 4.31 5.75 -4.04 -0.02 4.28 16 8 C 0.03 0.68 1.71 -155.66 -0.27 0.41 16 9 C -0.50 -12.84 7.43 -34.44 -0.26 -13.10 16 10 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 11 C 0.08 2.06 5.39 -17.82 -0.10 1.97 16 12 N -0.87 -24.28 12.97 55.43 0.72 -23.56 16 13 Si 0.89 20.54 29.55 -169.99 -5.02 15.51 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C -0.21 -4.48 9.88 -26.73 -0.26 -4.74 16 18 C -0.15 -3.51 9.51 -26.73 -0.25 -3.76 16 19 C -0.12 -1.21 4.86 -26.55 -0.13 -1.34 16 20 C -0.16 -1.56 5.95 -26.59 -0.16 -1.72 16 21 C 0.06 0.66 6.84 37.21 0.25 0.91 16 22 O -0.37 -5.94 10.67 -35.23 -0.38 -6.32 16 23 C 0.05 0.73 5.40 37.20 0.20 0.94 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.38 6.17 -51.93 -0.32 1.05 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.39 5.31 7.55 -40.82 -0.31 5.01 16 28 H 0.40 7.92 7.47 -40.82 -0.30 7.61 16 29 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.03 0.72 7.94 -51.93 -0.41 0.31 16 31 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.83 7.11 -51.93 -0.37 0.46 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.12 2.20 6.12 -51.93 -0.32 1.88 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -30.02 341.23 -8.60 -38.62 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -7.07 Total: 13.55 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.46 Total: -2.52 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.12 Total: -50.40 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.31 Total: -19.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.02 -8.60 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431203376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.022 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds