Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00049 * 2 1 4 4 C 1.53002 * 109.47264 * 125.00333 * 3 2 1 5 5 C 1.52998 * 109.47008 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47273 * 304.99910 * 5 4 3 7 7 C 1.52998 * 109.46966 * 184.99660 * 5 4 3 8 8 O 1.42895 * 109.47458 * 305.00505 * 7 5 4 9 9 N 1.46505 * 109.47298 * 65.00190 * 5 4 3 10 10 C 1.34779 * 120.00040 * 204.99950 * 9 5 4 11 11 O 1.21582 * 120.00003 * 359.97438 * 10 9 5 12 12 N 1.34777 * 119.99990 * 179.97438 * 10 9 5 13 13 C 1.46498 * 120.00061 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47042 * 178.28618 * 13 12 10 15 15 C 1.50694 * 115.55447 * 65.13833 * 14 13 12 16 16 H 1.07999 * 120.00748 * 265.40519 * 15 14 13 17 17 C 1.37879 * 119.99795 * 85.40895 * 15 14 13 18 18 N 1.31518 * 119.99932 * 353.54862 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 173.55859 * 17 15 14 20 20 H 1.48504 * 109.46967 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47644 * 119.99621 * 19 17 15 22 22 H 1.48508 * 109.47232 * 239.99726 * 19 17 15 23 23 C 1.53009 * 117.49493 * 279.46856 * 14 13 12 24 24 C 1.53007 * 117.49708 * 210.81341 * 14 13 12 25 25 H 1.08003 * 119.99949 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99963 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99949 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47347 * 5.00058 * 3 2 1 29 29 H 1.09004 * 109.47194 * 245.00338 * 3 2 1 30 30 H 1.09000 * 109.46742 * 59.99946 * 4 3 2 31 31 H 1.08996 * 109.46769 * 300.00093 * 4 3 2 32 32 H 1.09002 * 109.47117 * 65.00341 * 7 5 4 33 33 H 1.09001 * 109.47220 * 185.00087 * 7 5 4 34 34 H 0.96702 * 114.00327 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99900 * 24.99399 * 9 5 4 36 36 H 0.97007 * 119.99852 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46546 * 298.28405 * 13 12 10 38 38 H 1.08994 * 109.46893 * 58.28298 * 13 12 10 39 39 H 0.97001 * 119.99782 * 185.05808 * 18 17 15 40 40 H 1.08993 * 117.50128 * 0.02562 * 23 14 13 41 41 H 1.09002 * 117.49467 * 145.02641 * 23 14 13 42 42 H 1.08998 * 117.49408 * 214.97797 * 24 14 13 43 43 H 1.08994 * 117.49605 * 359.97129 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.8006 2.6578 1.1812 6 1 4.2867 2.7963 0.2154 7 6 4.8586 2.6358 2.2862 8 8 4.2349 2.3384 3.5370 9 7 2.8672 3.7612 1.4208 10 6 3.1632 5.0013 0.9837 11 8 4.2052 5.2044 0.3910 12 7 2.3043 6.0164 1.2037 13 6 2.6263 7.3644 0.7292 14 6 1.4747 8.3130 1.0680 15 6 1.2294 8.5388 2.5376 16 1 0.4943 7.9446 3.0600 17 6 1.9435 9.5041 3.2153 18 7 2.9251 10.1397 2.6136 19 14 1.5168 9.9090 4.9883 20 1 0.3814 9.0601 5.4304 21 1 2.6957 9.6492 5.8530 22 1 1.1335 11.3401 5.0908 23 6 0.2570 8.3049 0.1415 24 6 1.2266 9.4893 0.1214 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 3.7401 0.5065 1.0919 31 1 2.4774 1.2355 2.1129 32 1 5.6033 1.8724 2.0610 33 1 5.3434 3.6103 2.3445 34 1 4.8474 2.3085 4.2847 35 1 2.0360 3.5993 1.8939 36 1 1.4731 5.8544 1.6770 37 1 3.5383 7.7121 1.2145 38 1 2.7745 7.3437 -0.3504 39 1 3.4746 10.7654 3.1110 40 1 0.2762 7.6235 -0.7090 41 1 -0.7214 8.4633 0.5951 42 1 0.8857 10.4262 0.5617 43 1 1.8842 9.5875 -0.7423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458732633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -51.187472 kcal Electronic energy + Delta-G solvation = -22464.541946 eV Core-core repulsion = 19124.655081 eV Total energy + Delta-G solvation = -3339.886865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63905 -37.61581 -36.56551 -35.84224 -33.97000 -33.19489 -31.95090 -30.80995 -28.12002 -26.07330 -25.02162 -23.72582 -21.28400 -20.89931 -20.14081 -19.89154 -19.35076 -17.83107 -17.22594 -16.34498 -15.79376 -15.51098 -15.05574 -14.65191 -14.45268 -14.20047 -13.94894 -13.67631 -13.58342 -13.17219 -12.95694 -12.61731 -12.33523 -11.86456 -11.66834 -11.57489 -11.35245 -11.06667 -11.00721 -10.89112 -10.75715 -10.50615 -10.24992 -9.99397 -9.68385 -9.48285 -9.45307 -8.93788 -8.75823 -8.47800 -8.22238 -7.92271 -6.05788 -4.13958 2.13414 3.26034 3.27611 3.35066 3.37481 3.83435 4.33967 4.37018 4.53697 4.86623 4.87193 4.97652 5.17740 5.20762 5.22679 5.37121 5.39649 5.50162 5.63772 5.67287 5.77948 5.87058 6.01357 6.06716 6.20501 6.36984 6.48064 6.50075 6.62975 6.63106 6.71946 6.88197 6.90204 7.11201 7.38279 7.45842 7.50420 7.61188 7.67397 7.83799 8.36762 8.73138 8.87037 9.26849 9.52630 11.02100 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.004159 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.054439 B = 6730.049709 C = 7281.646585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.115 4.115 5 C 0.170 3.830 6 H 0.097 0.903 7 C 0.061 3.939 8 O -0.568 6.568 9 N -0.741 5.741 10 C 0.698 3.302 11 O -0.609 6.609 12 N -0.720 5.720 13 C 0.183 3.817 14 C 0.028 3.972 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.375 0.625 35 H 0.395 0.605 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -17.669 -2.064 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.134 4.134 4 C -0.153 4.153 5 C 0.064 3.936 6 H 0.115 0.885 7 C -0.018 4.018 8 O -0.373 6.373 9 N -0.397 5.397 10 C 0.398 3.602 11 O -0.489 6.489 12 N -0.372 5.372 13 C 0.059 3.941 14 C 0.027 3.973 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.011 -17.251 -3.000 17.510 hybrid contribution -0.307 0.218 1.799 1.838 sum -0.318 -17.033 -1.202 17.079 Atomic orbital electron populations 1.23869 0.96049 1.01794 1.01743 1.22977 0.96031 0.98483 0.99417 1.20809 0.98525 0.95336 0.98741 1.21705 0.98438 0.96068 0.99086 1.20819 0.89682 0.85676 0.97459 0.88477 1.22716 0.94955 0.99585 0.84574 1.86455 1.39137 1.94203 1.17520 1.45071 1.24318 1.07067 1.63235 1.16072 0.83912 0.80462 0.79739 1.90851 1.25990 1.83496 1.48538 1.45141 1.22632 1.08383 1.61068 1.20823 0.99309 0.78502 0.95444 1.19053 0.90738 0.95083 0.92431 1.20369 1.22546 1.18749 0.91902 0.92208 1.24983 0.94939 0.95286 0.97832 1.69991 1.17836 1.27384 1.35833 0.86584 0.78413 0.78275 0.84991 1.19740 1.21088 1.20979 1.23016 0.95944 1.03073 1.02752 1.22488 1.01512 0.93689 1.00898 0.88496 0.88773 0.87630 0.91077 0.90989 0.90769 0.90411 0.93402 0.92709 0.77852 0.77124 0.77107 0.91318 0.94802 0.92947 0.91661 0.90429 0.89850 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.32 29.01 0.42 -1.32 16 2 C -0.15 -1.35 9.52 -36.03 -0.34 -1.69 16 3 C -0.10 -0.94 5.54 -27.88 -0.15 -1.10 16 4 C -0.11 -1.13 4.45 -26.73 -0.12 -1.25 16 5 C 0.17 2.13 2.37 -67.93 -0.16 1.97 16 6 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 7 C 0.06 0.74 6.85 37.16 0.25 0.99 16 8 O -0.57 -6.59 12.83 -35.23 -0.45 -7.04 16 9 N -0.74 -10.84 4.48 -58.67 -0.26 -11.10 16 10 C 0.70 13.47 8.53 -86.92 -0.74 12.73 16 11 O -0.61 -13.90 16.01 5.29 0.08 -13.81 16 12 N -0.72 -14.36 5.48 -65.23 -0.36 -14.71 16 13 C 0.18 4.24 5.50 -4.05 -0.02 4.22 16 14 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 15 C -0.50 -12.90 8.63 -34.44 -0.30 -13.20 16 16 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 18 N -0.87 -24.44 12.91 55.43 0.72 -23.72 16 19 Si 0.89 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.10 0.86 7.84 -52.48 -0.41 0.45 16 26 H 0.09 0.70 8.06 -52.49 -0.42 0.28 16 27 H 0.11 0.82 8.06 -52.48 -0.42 0.39 16 28 H 0.07 0.76 7.40 -51.93 -0.38 0.38 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.82 7.73 -51.93 -0.40 0.42 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.38 2.91 9.12 45.56 0.42 3.32 16 35 H 0.40 5.14 8.62 -40.82 -0.35 4.79 16 36 H 0.40 7.25 8.38 -40.82 -0.34 6.91 16 37 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -30.94 364.71 -8.28 -39.22 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.49 Total: 14.62 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.00 Total: -4.65 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.10 Total: -49.54 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.37 Total: -20.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.94 -8.28 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.970 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds